BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470930
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08630.1 | Symbols: THA1 | threonine aldolase 1 | chr1:27437... 2143 0.0
> AT1G08630.1 | Symbols: THA1 | threonine aldolase 1 | chr1:2743761-2746939
REVERSE LENGTH=1566
Length=1566
Score = 2143 bits (1160), Expect = 0.0
Identities = 1250/1294 (97%), Gaps = 3/1294 (0%)
Strand=Plus/Plus
Query 73 ACAAGCTTATTTAATAAGAAACTTCAAATTAGAATCAGAAACAAGAGCATCCTTCTTCAT 132
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ACAAGCTTATTTCATAAGAAACTTCAAATTAGAATCAGAAACAAGAGCATCCTTCTTCAT 277
Query 133 TTACAGAGGTAAATTTGGTGTAAAAATGGTGATGAGAAGTGTGGATTTACGATCTGATAC 192
||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 278 TTACACAGGTAAATTAGGTGTAAAAATGGTGATGAGAAGTGTGGATCTACGATCAGATAC 337
Query 193 CGTTACTAAACCGACTGATGCGATGCGAGAAGCAATGTGTAGCGCAGAGGTGGATGATGA 252
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 338 CGTTACTAGACCGACAGATGCGATGCGAGAAGCAATGTGTAACGCAGAGGTGGATGATGA 397
Query 253 CGTCCTCGGATACGACCCAACAGCTAGACGTCTTGAAGAGGAGATGGCTAAGATGATGGG 312
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 398 CGTCCTCGGATATGACCCAACGGCTAGACGTCTTGAAGAGGAGATGGCTAAGATGATGGG 457
Query 313 GAAAGAGGCTGCTCTGTTCGTGCCATCCGGGACAATGGGGAATCTCATCAGCGTGATGGT 372
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 458 GAAAGAGGCTGCTCTGTTCGTGCCATCCGGGACAATGGGGAATCTGATCAGCGTGATGGT 517
Query 373 TCACTGCGACGTGAGAGGCAGCGAGGTGATTCTTGGCGATAATTGCCACATCCATGTTTA 432
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 518 TCACTGCGACGTGAGAGGCAGCGAGGTGATTCTTGGCGACAATTGTCACATCCATGTTTA 577
Query 433 CGAGAATGGAGGGATATCGACAATCGGAGGAGTGCATCCCAAGACGA-TCAAGAATGAAG 491
||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||
Sbjct 578 CGAGAATGGAGGGATATCGACTATCGGGGGAGTGCATCCTAAGAC-AGTCAAGAATGAAG 636
Query 492 AAGACGGGACCATGGACTTGGAGGCCATTGAAGCAGCCATTAGAGATCCTAAAGGAAGCA 551
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 637 AAGACGGGACCATGGACTTGGAGGCCATTGAAGCAGCTATTAGAGATCCTAAAGGAAGCA 696
Query 552 CGTTTTATCCATCAACAAGGTTGATTTGCTTGGAGAACACACATGCCAACTCTGGTGGGA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CGTTTTATCCATCAACAAGGTTGATTTGCTTGGAGAACACACATGCCAACTCTGGTGGGA 756
Query 612 GATGTTTGAGCGTGGAATACACTGAGAAAGTTGGAGAGATAGCCAAGAGACATGGCGTAA 671
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 757 GATGTTTGAGCGTGGAATACACTGAGAAAGTTGGAGAGATTGCGAAGAGACATGGCGTGA 816
Query 672 AGCTCCATATCGACGGAGCCCGTCTTTTCAATGCTTCAATTGCACTTGGAGTTCCAGTCC 731
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 817 AGCTCCATATCGACGGAGCCCGTCTTTTCAATGCTTCCATTGCACTTGGAGTTCCAGTCC 876
Query 732 ATAAGCTTGTTAAGGCTGCTGACTCCGTTCAGGTGTGTCTCTCTAAAGGTCTTGGAGCTC 791
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 877 ATAAGCTTGTTAAGGCTGCGGACTCCGTTCAGGTGTGTCTCTCTAAAGGTCTTGGAGCTC 936
Query 792 CGGTAGGATCTGTAATCGTTGGTTCGCAAAGCTTCATAGAGAAGGCGAAAACGGTTAGGA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 CGGTAGGATCTGTAATCGTTGGTTCGCAAAGCTTCATAGAGAAGGCGAAAACGGTTAGGA 996
Query 852 AAACATTAGGTGGAGGAATGAGACAAATAGGTGTACTGTGCGCAGCCGCTTTGGTCGCAC 911
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 997 AAACATTAGGTGGAGGAATGAGACAAATAGGTGTTCTGTGCGCAGCCGCTTTGGTCGCAC 1056
Query 912 TCCAAGAAAACCTCCCAAAGCTACAACATGACCACAGGAAGGCTAAGTTGTTAGCTGAAG 971
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1057 TCCAAGAAAACCTCCCAAAGCTACAACATGACCACAAGAAGGCTAAGTTGTTAGCTGAAG 1116
Query 972 GGTTGAATCAAATGAAAGGGATTAGAGTAAATGTTGCAGCCGTGGAGACCAACATGATAT 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1117 GGTTGAATCAAATGAAAGGGATTAGAGTAAATGTTGCAGCCGTGGAGACCAACATGATTT 1176
Query 1032 TCATGGATATGGAGGATGGTTCAAGACTTACGGCTGAGAAACTGCGGAAGAGTTTAGAGG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1177 TCATGGATATGGAGGATGGTTCAAGACTTACGGCTGAGAAACTGCGGAAGAATCTAGAGG 1236
Query 1092 AGAATGGCATTCTCCTCATCCGGGGAAACTCATCCCGGATCAGAATGGTTATACACCACC 1151
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1237 AGAATGGCATTCTCCTTATCCGGGGAAACTCATCCCGGATCAGAATAGTTATACACCACC 1296
Query 1152 AGATAACAACAAGTGATGTGCATTACACACTGTCTTGCTTTCAGCAAGCAATGCAAACGA 1211
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1297 AGATAACAACAAGTGATGTGCATTACACATTGTCTTGCTTTCAGCAAGCAATGCTAACGA 1356
Query 1212 TACAGGAACCAAGCCGAATCTAATATGGCGAAACGGAAAGGCTTCTTCTTTTCTTTTGAA 1271
| |||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| ||
Sbjct 1357 TGCAGGAACCAAGCCGAACCTAATTTGGCGAAACCGAAATGCTTCTTCTTTTCTTTTCAA 1416
Query 1272 CTTACTAAATATTGTTGTCTAA-GTACATTTTAATTAAAACTATAAGCATCTCAATGAAA 1330
|||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1417 CTTATTAAATATTGTTGTCTAAAGTACATTTTAATTAAAACTATAAGCATTTCAATGAAA 1476
Query 1331 TTGTCACCCTCATTCCTGAATCTTTGAGTTTTTA 1364
|||||||||||||||||| || ||||||||||||
Sbjct 1477 TTGTCACCCTCATTCCTGGATGTTTGAGTTTTTA 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5