BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470932
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08640.1 | Symbols: CJD1 | Chloroplast J-like domain 1 | chr... 1653 0.0
> AT1G08640.1 | Symbols: CJD1 | Chloroplast J-like domain 1 | chr1:2748398-2751278
REVERSE LENGTH=1270
Length=1270
Score = 1653 bits (895), Expect = 0.0
Identities = 1032/1096 (94%), Gaps = 18/1096 (2%)
Strand=Plus/Plus
Query 1 CTTTTAGTTTCCTTTTAGCCCTATTAGAGCTCTGCTCTGCCATGGCTCTCGCACTATCTA 60
||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 29 CTTCTAGTTTCCTTTTAACCCTACTAGAGCTCTGCTCTGCCATGGCTCCCGCACTATCTA 88
Query 61 CTTGTTGCTGCTCCATCATGGCTTTTTCAATATCCAACGCGCTTCGTTACCCTCATCCTC 120
||| ||||| |||| |||||||||| |||| ||| |||||||||||||||| ||||||||
Sbjct 89 CTTCTTGCTCCTCCGTCATGGCTTTCTCAACATCAAACGCGCTTCGTTACCATCATCCTC 148
Query 121 AAATTGCTCTCAGGAACTCTCTTCGAACTCCCAAATCGCCTTCTTTTGTCAGGCTTCCTC 180
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 149 AAATTTCTCTCAGGAACTCTCTTCGCGCTCCCAAATCGCCTTCTTTTGTCAGGCTTCCCC 208
Query 181 TC-GAAAGGGTGTTGCAGAGCAGGATTGTGATACGTGCTGCTTCCTCTGCGGCTGGAAAT 239
|| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 209 TCGGAAA-GGTGTTACAGAGCAGGATTGTGATACGTGCTGCTTCGTCTGCGGCTGGTAAT 267
Query 240 CCACAGTCTGATGCTGACTTTAACCCGTATGAGGTTCTTGGTGTTAACCCTATTGAGGGA 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 268 CCACAGTCTGATGCTGACTTTAATCCGTATGAGGTTCTTGGTGTTAACCCTATAGAGGGA 327
Query 300 TTTGACAAGATCAAGCAAACTTATGGAAGAAAACTTAAAGATGCTCAGAGGAGCGGTGAT 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 328 TTTGACAAGATCAAGCAAACTTATGGAAGGAAACTTAAAGATGCTCAGAGGAGCGGTGAT 387
Query 360 GAAGCCACTGCTGCTCTACTTGAGAAAGCATATGATAAGCTCATGTATGCCCAGTTGATG 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 388 GAAGCCACTGCTGCTCTACTTGAGAAGGCATATGATAAGCTCATGTATGCCCAGTTGATG 447
Query 420 AATAGGAAAAAGGGTGTGACTTTTGGTTCGTTTAAGGTTTCCAAGGACATTAAATATGCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 AATAGGAAAAAGGGTGTGACTTTTGGTTCGTTTAAGGTTTCCAAGGACATTAAATATGCT 507
Query 480 GATAAGCAGCCCATTATACCATGGGGTCCAAGGTTTTCCAGGTCCTCC-AGAAATGATAT 538
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 508 GATAAGCAGCCCATTATACCATGGGGTCCAAGGTTTTCCAGGTCCTCCAAG-AATGATAT 566
Query 539 GTTGATCAACCTAGCGATATCAGTTGTGTTTAGTGCATGGATTGCGATAAAACGTAATGT 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTTGATCAACCTAGCAATATCAGTTGTGTTTAGTGCATGGATTGCGATAAAACGTAATGT 626
Query 599 GGAATACAAACCGCTGCAGTTCATGTCTTTTGTATTTGTTTACAGAATTTTTGAGAAATT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TGAATACAAACCGCTGCAGTTCATGTCTTTTGTATTTGTTTACAGAATTTTTGAGAAATT 686
Query 659 AAAATCCTTTGAAGCACCTTCATCTCCAATATATAACGAGGAAGGCGAAGAAAGTGGACG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 AAAATCCTTTGAAGCACCTTCATCTCCAATATATAACGAGGAAGGCGAAGAAAGTGGACG 746
Query 719 GGGATTGAGAATGGGAAAGAGGCTTCTTCGTTCTCTTTCCTTAGTTTTTGGCTCTATACT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGGATTGAGAATGGGAAAGAGGCTTCTTCGTTCTCTTTCCTTAGTTTTTGGCTCTATACT 806
Query 779 -TGTGGCATCTTTGGCCTACACTGGGATCTTAAATGGCATCGAGTACATGGGCAACTCCA 837
| | ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 807 CT-TAGCATCTTTGGCATACACTGGGTTCTTAAATGGCATCGAGTACATGGGCTACTCCA 865
Query 838 TACCCATGGTTCTTTACAACAACCAGGAACTTATAGTGACGGCGTCATCGGCTTTCATGC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 TACCCATGGTTCTTTACAACAACCAGGAACTTATAGTGACGGCGTCATCGGCTTTCATGC 925
Query 898 TCTATGTTATAGCGTCGTATTACAGATAATGCGAGAGAGCCCAGAGGAGAGTTGAAAAAT 957
|||||||||||||||||| |||||||||||||||||| || | |||||| ||| | |
Sbjct 926 TCTATGTTATAGCGTCGTTTTACAGATAATGCGAGAGT-CC-ACAGGAGAATTGGTCAGT 983
Query 958 TAGAAGCTTTTGGAGAAGTTATGCTGTAT-A--GCCTGTGGCTGTGAGGAGAT-AAAATG 1013
||||||||||||||||||||||||||||| | | ||| |||| | | |||| |||| |
Sbjct 984 TAGAAGCTTTTGGAGAAGTTATGCTGTATTATAGGATGTTGCTG-G-G-AGATGAAAA-G 1039
Query 1014 TTTATTGTCTTCGGAGAGATGGGGTTTTCTTTATAAt-ttt-ttttGTGTGGAAAATCGA 1071
|||||| ||| | ||||||||||||| ||||||||| ||| |||||||||||||||| |
Sbjct 1040 TTTATTTTCTACAGAGAGATGGGGTTATCTTTATAACCTTTCTTTTGTGTGGAAAATCAA 1099
Query 1072 GTAAATTTGGCAAGAG 1087
|||||||| |||||||
Sbjct 1100 GTAAATTTTGCAAGAG 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5