BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470934
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08660.1 | Symbols: MGP2 | MALE GAMETOPHYTE DEFECTIVE 2 | ch... 2667 0.0
> AT1G08660.1 | Symbols: MGP2 | MALE GAMETOPHYTE DEFECTIVE 2 |
chr1:2757041-2759794 REVERSE LENGTH=1617
Length=1617
Score = 2667 bits (1444), Expect = 0.0
Identities = 1557/1610 (97%), Gaps = 14/1610 (1%)
Strand=Plus/Plus
Query 1 TATCCTCCGGCGGCATCAG-TTT---G-TTCTTGG---ATCACACTCACCTGCTTCGTT- 51
||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||
Sbjct 8 TATCCTCCGGCGGCATCAGTTTTGGAGTTTCTTGGATCATCACACTCACCTGCTTCGTTA 67
Query 52 C-GTT-GC-T--ATTCCCTTGGATTGGATTCGCTCTTTCATGGTTGAAGAATGAGATCTC 106
| || | | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CTCTTCCCTTGGATTGGATTGGATTGGATTCGCTCTTTCATGGTTGAAGAATGAGATCTC 127
Query 107 ACCAAGCTGGCCGCAAACTGCCGCTTCTTCAACTTCTCGGCTGCGTCGCAGTTTTCTCCG 166
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 128 ACCAAGCTGGCCGCAAACTTCCGCTTCTTCAACTTCTCGGCTGCGTCGCTGTTTTCTCCG 187
Query 167 TTTTCGTTTTCACCATCCAATCTTCCTTCTTCGCAGATAATAATCGTAAACTAGATCTTC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTTTCGTTTTCACCATCCAATCTTCCTTCTTCGCAGATAATAATCGTAAACTAGATCTTC 247
Query 227 AGCCGGAAGATATCCAGATCTTGTCAGATTTTCAGTCCAGCGTTCAACAGTGCGTGGCGA 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 248 AGCCGGAAGATATCCAGATCTTGTCAGATTTTCAGTCCAGCGTTCAACAGTGCGTGGCTA 307
Query 287 ACAGAGGGCTTGGACTCTCTGCCCATATTATTGATCACTGTAATCTGATCCTTAAGTTCC 346
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 308 ACAGAGGGCTTGGACTCTCTGCCCATATTATCGATCACTGTAATCTTATCCTCAAGTTCC 367
Query 347 CTGAAGGCACTAACAGTACTTGGTACAATGCACAATTTAAAGTTTTTGAAGCATTGGAGT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CTGAAGGCACTAACAGTACTTGGTACAATGCACAATTTAAAGTTTTTGAAGCATTGGAGT 427
Query 407 TCAAGTATAATGTTTGTGAGGCAGTTCTCTTATGGGAGCAGTACCGCAATATGACTACAG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TCAAGTATAATGTTTGTGAGGCAGTTCTCTTATGGGAGCAGTACCGCAATATGACTACAG 487
Query 467 TATTGACAAGAGAATACCTCGACGTACGCCCTGATGGGTGGTTGGACTATGCAGCTATGA 526
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 488 TATTGACAAGAGAATACCTCGATGTACGCCCTGATGGGTGGTTGGACTACGCAGCTATGA 547
Query 527 GAATTGCACAGCTGGGAGCTGAGAAGTGTTATAATCGTACATTGTGTGAGGAGCATCTTA 586
||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 548 GAATTGCACAGTTGGGAGCTGATAAGTGTTATAATCGTACATTGTGTGAAGAGCATCTTA 607
Query 587 ATGTAATCCTTCCAGCAAAGCCTCCTTTCCACCCACGGCAGTTTCATAAATGCGCTGTTG 646
|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 608 ATGTGATTCTTCCAGCGAAGCCTCCTTTTCACCCACGGCAGTTTCATAAATGCGCTGTTG 667
Query 647 TTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATG 727
Query 707 CTGTATTTCGAGACAATGAAGCTCCTGTCAATAAGAAGTATGCCAAGTACGTAGGAGTGA 766
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 728 CTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGAAGTATGCCAAGTACGTAGGAGTGA 787
Query 767 AAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATG 847
Query 827 GGTCTGACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GGTCTGACAATGAAGTGCTTATAATAAAAAGTGTGACCCACCGAGACTTCAATGAAATGA 907
Query 887 TAAAGCGTATACCAAACCCTGTTTATCTTTTCCAAGGAATTGTCCTACGCAGAGGTGCCA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 TAAAGCGTATACCAAACCCTGTTTATCTTTTCCAAGGAATTGTCCTACGCAGAGGTGCCA 967
Query 947 AAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATAT 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AAGGAACCGGGATGAAATCCATTGAACTAGCATTGTCCATGTGCGATATTGTTGACATAT 1027
Query 1007 ATGGTTTCACCGTTGATCCTGGATACACAGAGTGGACACGTTACTTTTCAACGCCAAGGA 1066
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1028 ATGGTTTCACTGTTGATCCTGGATACACAGAGTGGACGCGTTACTTTTCCACGCCAAGGA 1087
Query 1067 AAGGACACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTAA 1126
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTGTAA 1147
Query 1127 TACGGATTCATTCTCCCATGAGATCCCAGAGAAAGGAGGACTGGTCAAGTGTGCCAAGTC 1186
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1148 TACGGATCCATTCTCCCATGAGATCCGAGAGAAAGGAGGACTGGTCAAGTGTGCCAAGTC 1207
Query 1187 GTGAAATGATAAGCAGAGCTCACACAGCTGCCTTACGCCTACAAAGGAGCCAACAACCAA 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1208 GTGAAATGATAAGCAGAGCTCACACAGCTGCCTTACGCCTACAAAGGAGCCAACAGCCAA 1267
Query 1247 CTAGTTTGAAGAGGGATGGGTCAGGACAATTCGGTAATTGCAAGGTGTGGGGCGACGCAG 1306
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1268 CTAGTTCGAAGAGGGATGGGTCAGGACAATTCGGTAATTGCAAGGTGTGGGGCGATGCAG 1327
Query 1307 ACCCAACAAAAGGACCCGTCTCGGGATCTCCGGACATGAGTGAGATCAGGAAGAAGTCAA 1366
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1328 ACCCTACAAAAGGACCTGTCTCGGGATCTCCGGACATGAGTGAGACCAGGAAGAAGTCAA 1387
Query 1367 ATTACAAGAAATGGGAAGTGATGCCGTTTAGGAGCTTAAGAAAGGAAGCTAGGGATCACT 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 ATTACAAGAAATGGGAAGTGATGCCGTTTAGGAGCTTAAGAAAGGAAGCTAGGGATCACT 1447
Query 1427 ATATCCAAATGAAAGGTGTGTCACAGTATAAGATGGATGGAAATAAACTGGACGATCTGG 1486
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1448 ATATCCAAATGAAAGGCGTGTCACAGTATAAGATGGATGGAAATAAGCTGGACGATCTGG 1507
Query 1487 TTTGCGTGAGGCATCCACTGAAATTAGAGGCGTAAAtttttttATCATCTTGTAAAGTTT 1546
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1508 TTTGCGTGAGGCATCCACTGAAATTAGATACGTAAATTTTTTTATCATCTTGTAAAGGTT 1567
Query 1547 CAATTTCAATACCATCTTGAGCTTACAAAGTAAAGGTTCCTACATTTCAC 1596
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1568 CAATTTCAATAACATCTTGAGCTTACAAAGTAAAGGTTCCTACATTTCAC 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5