BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470937
Length=2601
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08680.4 | Symbols: ZIGA4 | ARF GAP-like zinc finger-contain... 2603 0.0
> AT1G08680.4 | Symbols: ZIGA4 | ARF GAP-like zinc finger-containing
protein ZIGA4 | chr1:2762584-2768598 FORWARD LENGTH=2403
Length=2403
Score = 2603 bits (1409), Expect = 0.0
Identities = 1652/1766 (94%), Gaps = 30/1766 (2%)
Strand=Plus/Plus
Query 649 GACCGTGGAAGCTCTGAAGATATGACTCGACGGGCCAACTCCTATCATTCTTACTCCCAA 708
|||| || ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 645 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAA 704
Query 709 AGCCCTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGCCCTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTT 764
Query 769 ACCGGCAAGTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ACCGGCAAGTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGC 824
Query 829 CCTGGACGTTTTAGTGATCATATGTTTGAAGACCAATTCGCAAATGAGGGCTCAGCTCCA 888
|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 825 CCCGGACGTTTTAGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCA 884
Query 889 AGGGCTTCAGATTTTTCTGTGTCAAGTGGAGGAGATCCGTTCAGGTCTGATATACAGTCA 948
||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 885 AGGGCTTCAGATTATTCTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCA 944
Query 949 CCAAATTTTCAGCAGGAAGCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CCAAATTTTCAGCAGGAAGCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCT 1004
Query 1009 CCAAGTGAGAACTTATTTCCAGGCAGGCAACCTCAGAGAACTACATCTTCTGGGAGTGTC 1068
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1005 CCAAGTGAAAACTTATTTCCAGGCAGGCAACATCAGAGAACTACATCTTCTGGGAGTGTC 1064
Query 1069 AGATCAGTTGACAGTAATTCCATCTCTATCAAGTCATATACCTCGAGTGGTTTAGGGGAA 1128
||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1065 AGATCAGTTGACAGTAATTTCATGTCTATCAAGTCATATACTTCGGGTGGTTTAGGGGAA 1124
Query 1129 GCCATCTCTGAAAGTCGTCAAAATACAGGAAGCCAGCAAGATAAAGCATCTAATCATGTT 1188
||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1125 GCCGTATCTGAAAGTCGTCAAAATACAGGAAGCCAGCAAGGTAAAACATCTAATCATGTT 1184
Query 1189 CCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGTTTCAGTTGCCAGGAGCGCCA 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGTTTCAGTTGCCAGGAGCGCCA 1244
Query 1249 GTTGCCCAATCTGTCAATACATTTCAACCTTCAATAGCATCCCAACCTCCAACTGTGAAT 1308
|| || ||||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 1245 GTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCACCCCGATCTCCACCTGTGAAT 1304
Query 1309 TTTCATCAAGCTCCACAGACATACTCATCCACCCCGACAAATTTGTTTGCTGGAAATTTG 1368
|||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 1305 CTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTCGTTTGCTGGAAATTTG 1364
Query 1369 GGTCAGCAACCCACTTCAAGACCACCAGACTTGTCTGCGCCTAAGAATGAAGGTTGGGCT 1428
|||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1365 GGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAACGAAGGTTGGGCT 1424
Query 1429 TCTTTTGACAATCCCATGCCTGCTGTAAAATCTACAAACGTTATTACCTCCTCTGGAG-T 1487
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 1425 TCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCCCTGGAGAT 1484
Query 1488 TCCCCAGTTGGAAGTGAAAAATGAAG-GAATTCCACAGCCTAGCACAACCATGCAATGGC 1546
| || |||||||| |||||| ||||| || ||| |||||||||||||| |||||||| ||
Sbjct 1485 TTCC-AGTTGGAACTGAAAATTGAAGAGA-TTCTACAGCCTAGCACAAGCATGCAATTGC 1542
Query 1547 CACCATATCCATCAATTGTGGACCAGCATGCTTTGTCGATATCAAGTCCATGGCAGGAAG 1606
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1543 CACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAG 1602
Query 1607 ATCTCTCGGATGTTCTAAAAAATGTTGTCGATAATCCGCAGCTGTGGAATGCCTTTCCCG 1666
|||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1603 ATCTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCG 1662
Query 1667 ACTCTATTGAGGCAAATCCTTTGGACAGCGGTAGGAATACTT-ATCAACAGGTAGATGGA 1725
||||||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||
Sbjct 1663 ACTCTATTGAGGCCAATCCTTTGGACAGCAGTAGGAATA-TTCACCAACAGGTAGATGGA 1721
Query 1726 GCAAGTACTTCGTCATATAACATTGATCAACAGCATCTGGAATCACAAGTTATAGAG--- 1782
|||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||
Sbjct 1722 GCAAGTACTTCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGTCA 1781
Query 1783 --G-AATTAAGCAATGATGGCACCCAAGCAACCAGAATCCCTGCTGGCTCTTCTGCTTTT 1839
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1782 CAGGAATTAAGCAATGATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTT 1841
Query 1840 GGTTTTCCAGGAAACATTGGCATAGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTA 1899
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1842 GGTTTTCCAGGAAATATTGGCATGGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTA 1901
Query 1900 AATGAGCAAAAGTCAGCTAATCCATTTGATCTACCCTATGATTCTGAGTTTGCCTCAAAT 1959
||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 1902 AATGAACAAAAGTCAGCTAATCCATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAAT 1961
Query 1960 GATATGTTCTTGGACATGAGTTCGTTACAAGGGGCACTGCCCGATATCCAGACACCACAA 2019
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GACATGTTCTTGGACATGAGTTCGTTACAAGGGGCACTGCCCGATATCCAGACACCACAA 2021
Query 2020 GGCTTCCTTAATGGTGTATCACAACCGTGGCTCACTGCAGATTCTGTACCCTCGTACTTA 2079
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2022 GCCTTCCTTAATGGTGTATCACAACCGTGGCTCGCTGCAGATTCTGTACCCTCGTACTTA 2081
Query 2080 CCTGCTCCAGCAGTCTCACAAGGTGGCTTAGCATGCATGGCAGGGCAAGCATCAACGTCT 2139
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2082 CCTGCTCCAGCAGTCGCACAAGGTGGCTTAGCATACATGGCAGGGCAAGCATCAACG--- 2138
Query 2140 CAACTACAGAATTCAGCAGCACAAGGCCCTGTTGCATCTACTGGAGGCAATCCATTTGCG 2199
|| | | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2139 -AA-T------T-CAGCAGCACAAGGCCCTGTTGCATTTACTGGAGGCAATCCATTTGCT 2189
Query 2200 TAGACACACCTTGATCTGCTTCATCATCTTCTTCACTTATGCCTAGATGCTTCATCTTTT 2259
||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2190 TAGACACACCTCGGTCTTCTTCATCTTCTTCTTCACTTATGCCTAGATGCTTCATCTTT- 2248
Query 2260 GGATTCATCCTCATTCAGTGCCTTCCATATAtttttttAAAA---GAAGAAACCAGCCTT 2316
||||||||| ||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct 2249 GGATTCATCTTCATTTAGTGCCTTCCATAT-TTTTTTAAAAAAAAGAAGAAACCAGCCTT 2307
Query 2317 ATTGTTCAATGTGTTTATTTCTTTATTCGGAACCAACTTCAGCTGTATGTACCTTTTGAT 2376
||||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| |||
Sbjct 2308 ATTGTGCAATGTGTTTATTTCTTTGTTCGGAACCGACTTGAGCTGTATGTACCTTT-GAT 2366
Query 2377 TTGAGTGTATTTGCAAGTGGACATGA 2402
||||||||||||||||||||||||||
Sbjct 2367 TTGAGTGTATTTGCAAGTGGACATGA 2392
Score = 815 bits (441), Expect = 0.0
Identities = 568/623 (91%), Gaps = 34/623 (5%)
Strand=Plus/Plus
Query 1 AAAGGATAAAAAAGCTTtcttcttctctctctctATCATCATCTCTGTGAAATTCAAAAT 60
||||||||||||||||||||| || ||||||||| | ||||||||||| |||||||||||
Sbjct 23 AAAGGATAAAAAAGCTTTCTT-TT-TCTCTCTCTCT-ATCATCTCTGTCAAATTCAAAAT 79
Query 61 TCGAGCT-TTCGAAAAATCCAGCTCCAAAATCGTTGATTATCAGCGACTTAAACCC-AAC 118
||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 80 TCGAG-TATTCGAAAAATCCAGCTCCAAAATCGTTGATTAGCAGCGACTAAAACCCAAAG 138
Query 119 TTTGCCTTCAA-TTTCACG-A--A--TC----G-C--T-TC-----GTGGG-TCAATC-- 156
||| ||| ||| ||| ||| | | || | | | || |||| || ||
Sbjct 139 TTT-CCTCCAATTTTAACGAATTACTTCGTGGGTCAATCTCATAATCTGGGAACACTCTT 197
Query 157 TC----ATAACTTTGTTGGCAGCATCTATTCTAAAGCGAAATGATGGGAAGTAAAAGAGA 212
|| | | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 198 TCGGTTTTGATTTTGTTGGCAGCATCTATTCT-AAGCGAAATGATGGGAAGTAAAAGAGA 256
Query 213 AGAAGAGAGGAACGAGAAGATTATTCGTGGGCTTATGAAGCTTCCACCGAATCGTCGTTG 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGAAGAGAGGAACGAGAAGATTATTCGTGGGCTTATGAAGCTTCCACCGAATCGTCGTTG 316
Query 273 TATCAACTGCAATAGCCTTGGCCCTCAATATGTTTGCACAACTTTCTGGACTTTCGTATG 332
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 317 TATCAACTGCAATAGCCTTGGCCCTCAATATGTTTGCACAACTTTCTGGACCTTCGTATG 376
Query 333 CATGGCTTGTAGCGGGATACACCGTGAATTTACTCATCGTGTGAAGTCTGTGTCAATGTC 392
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 377 CATGGCTTGTAGCGGGATACACCGCGAATTCACTCATCGTGTGAAATCTGTGTCAATGTC 436
Query 393 AAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAGCGTGCCCGAGA 452
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 437 AAAGTTTACTTCTAAAGAAGTTGAAGTACTTCAAAATGGTGGTAATCAGCGCGCCCGAGA 496
Query 453 AATATATTTGAAAAACTGGGACCACCAACGACAGAGGCTTCCAGAAAACAGTAATGCTGA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AATATATTTGAAAAACTGGGACCACCAACGACAGAGGCTTCCAGAAAACAGTAATGCTGA 556
Query 513 GAGAGTTCGCGAATTTATCAAAAGTGTGTATGTGCAAAAGAAATATGCAGGTGCAAATGA 572
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 557 GAGAGTTCGCGAATTTATCAAAAATGTGTATGTGCAAAAGAAATATGCAGGCGCAAATGA 616
Query 573 TGCGGACAAGCCTCCGAAAGATA 595
||||||||||||| |||||||||
Sbjct 617 TGCGGACAAGCCTTCGAAAGATA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129129711282
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5