BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470941
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08700.1 | Symbols: PS1 | Presenilin-1 | chr1:2769815-277147... 2309 0.0
> AT1G08700.1 | Symbols: PS1 | Presenilin-1 | chr1:2769815-2771477
REVERSE LENGTH=1561
Length=1561
Score = 2309 bits (1250), Expect = 0.0
Identities = 1429/1516 (94%), Gaps = 10/1516 (1%)
Strand=Plus/Plus
Query 1 AGTAACTCTCTCCTCTCGTCTTCTTCCTCTGGAACCCCCaaaaaaaTGGCGT-AGCCAAA 59
|||| ||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||
Sbjct 50 AGTACCTCTCTCCTCTCGTCTTCTTCCTCTAGAACTCCC--AAAAATGGCGTAAGCCAAA 107
Query 60 AAATCCTCCGAAATCGATAACGATGGAGTCTAGTATCCTCGATTCTCTCGGAGTTGAGAT 119
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 108 AAATCCACCGAAATCGATAACGATGGAGTCTAGTATCCTCGATTCCCTCGGAGTTGAGAT 167
Query 120 TATCGGCGTGATGGCTCCCGTCTCCATCTGCATGTTCCTCGTCGTCCTTCTCACCTACTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TATCGGCGTGATGGCTCCCGTCTCCATCTGCATGTTCCTCGTCGTCCTTCTCACCTACTC 227
Query 180 TCTCTCTGTCACTTCCGACCCTCAGATCCGTACCGCCGCTAACCTCATTTACATCGAGAA 239
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 228 TCTCTCTGTCACTTCTGACCCTCAGATCCGTAGCGCCGCTAACCTCATTTACATCGAGAA 287
Query 240 TCCCTCCGACTCCGCCACCGTCAAGCTCGAAGGTAGTCTCGCCAACGCCATCGTCTTTGT 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 288 TCCCTCCGACTCCACCACCGTCAAGCTCGAAGGTAGTCTCGCCAACGCCATCGTCTTCGT 347
Query 300 CGTCCTCGTTGCCGCCGTCACTTTCATCCTTGTTCTCCTCTTCTACTACAATTTCACCAA 359
||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 348 CGTCCTCATTGCCGCCGTCACTTTCATCCTTGTTCTCCTCTTCTACTATAACTTCACCAA 407
Query 360 TTTCCTCAAGCATTACATGCGCTTCTCCGCCTTCTTTATCTTAGGTACGATGGGAGGTGC 419
|||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 408 TTTCCTTAAGCATTACATGCGTTTCTCTGCCTTCTTTGTCTTAGGTACGATGGGAGGTGC 467
Query 420 AATTTTCCTGTCGATTATCCAGCATTTCTCGATTCCTGTTGATTCCATCACCTGCTTCAT 479
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 AATTTTCCTATCGATAATCCAGCATTTCTCAATTCCTGTTGATTCCATCACCTGCTTCAT 527
Query 480 ATTGCTTTTCAATTTCACCATCTTGGGGACTTTGTCAGTGTTTGCTGGTGGAATACCAAT 539
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 528 ATTGCTTTTCAATTTCACGATCTTGGGGACTTTGTCTGTGTTTGCTGGTGGGATACCAAT 587
Query 540 TGTGCTTAGACAGTGTTATATGGTTGTTATGGGGATAGTTGTTGCAGCTTGGTTCACTAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TGTGCTTAGACAGTGTTATATGGTTGTTATGGGGATAGTTGTTGCAGCTTGGTTCACTAA 647
Query 600 GTTACCTGAATGGACTACATGGTTTATCTTGGTGGCTTTAGCTTTGTATGACTTGGTTGC 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GTTACCTGAGTGGACTACATGGTTTATCTTGGTGGCTTTAGCTTTGTATGACTTGGTTGC 707
Query 660 TGTTTTGGCACCTGGTGGGCCACTTAAGCTGTTGGTGGAGCTGGCTTCTAGCCGCGATGA 719
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 708 TGTTTTGGCACCTGGTGGGCCACTTAAGTTGTTGGTAGAGCTGGCTTCGAGCCGCGATGA 767
Query 720 AGAACTTCCTGCTATGGTTTATGAAGCTAGGCCGACTGTCTCCTCAGGCAACCAAGGGAG 779
|||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 768 GGAACTTCCTGCTATGGTTTATGAAGCTAGGCCGACTGTTTCATCAGGCAACCAAAGGAG 827
Query 780 AAACCGTGGTTCGAGTTTGAGGGCTTTGGTTGGCGCTGGTGGGGTTTCAGATTCTGGATC 839
||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 828 AAACCGTGGCTCGAGTTTAAGGGCTTTGGTTGGTGGTGGGGGGGTTTCAGATTCTGGATC 887
Query 840 AGTAGAGCTCCAAGCAGTTCGGAATCATGATGGAAACCAACTTGGAAGGGAAAATTCTCA 899
||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 888 AGTTGAGCTGCAAGCAGTTCGGAATCATGATGTAAACCAACTTGGAAGGGAAAATTCTCA 947
Query 900 TAATCTGGATTATAATGCTGTTGCAGTGACGGATATAGACAATGTAGATG--G-TAATGG 956
|||| |||||||||||||| |||| |||| |||||||||||||||||||| | || |||
Sbjct 948 TAATATGGATTATAATGCTATTGCGGTGAGGGATATAGACAATGTAGATGATGGTATTGG 1007
Query 957 TAACGGAAACAGAGGTGGTCTTGAGAGGTCACCTCTGGTTGGAAGTCCCGGTGCCTCAGA 1016
|||||||| ||||||||| ||||||||||||||||| |||||||||||| |||| |||||
Sbjct 1008 TAACGGAAGCAGAGGTGGACTTGAGAGGTCACCTCTAGTTGGAAGTCCCAGTGCGTCAGA 1067
Query 1017 GCACTCAACC-CGAGTTGGAACCAGAGGAAATATCGATGACAGAGAAAGTGTTATAGATG 1075
|||||||||| | ||| ||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1068 GCACTCAACCTC-AGTAGGAACCAGAGGAAATATGGAAGACAGAGAAAGTGTTATGGATG 1126
Query 1076 AAGAAATGTCTCCTCTTGTTGAGTTGATGGGCTGGGGAGATAATAGGGAAGAACCAAGAG 1135
||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1127 AAGAAATGTCTCCACTAGTTGAGTTGATGGGTTGGGGAGATAATAGGGAAGAAGCAAGAG 1186
Query 1136 GTTTGGTGGAGTTGGATAACGTTGTCGACAGTTTGAA-TAGAGGCATAAAACTTGGTCTA 1194
|||||| ||||| |||||||||||| |||| ||| || |||||||||||||||||||||
Sbjct 1187 GTTTGGAGGAGTCGGATAACGTTGTGGACA-TTTCAAATAGAGGCATAAAACTTGGTCTT 1245
Query 1195 GGAGACTTTATTTTCTACAGTGTTCTTGTTGGTAGGGCAGCAATGTATGATCTGATGACG 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GGAGACTTTATTTTCTACAGTGTTCTTGTTGGTAGGGCAGCAATGTATGATCTGATGACT 1305
Query 1255 GTTTATGCCTGTTATCTTGCGATCATCTCGGGACTTGGGTGCACTCTTATTTTGTTGTCC 1314
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1306 GTGTATGCCTGTTACCTTGCGATCATCTCCGGACTTGGGTGCACTCTTATTTTGTTATCT 1365
Query 1315 GTATACAACCGAGCTCTGCCTGCCCTTCCCATATCTATCATGTTGGGTGTTGTTTTCTAC 1374
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1366 GTGTACAACCGAGCTCTGCCTGCCCTTCCCATATCCATCATGTTGGGTGTTGTTTTTTAC 1425
Query 1375 TTCTTGACGCGATTATTGATGGAGCCGTTTGTTGTTGGGGTGACAACAAACTTGATGATG 1434
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1426 TTCTTGACGCGACTATTGATGGAGCCCTTTGTTGTTGGGGTGACAACAAACTTGATGATG 1485
Query 1435 TTCTGATTAACCAAAAATTCTAGTGGAACAAGTAAATGATATCATGATTATGCTGCTTTA 1494
|||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1486 TTCTGATTAACCCAAAATTCTAGTGGACCAAGTAAATGAAATCCTGATTATGCTGCTTTA 1545
Query 1495 TCCATGTATTGCACCT 1510
|||||||||| |||||
Sbjct 1546 TCCATGTATTTCACCT 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5