BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470949
Length=2538
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08760.1 | Symbols: | Plant protein of unknown function (DU... 3709 0.0
> AT1G08760.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr1:2805371-2808621 FORWARD LENGTH=2566
Length=2566
Score = 3709 bits (2008), Expect = 0.0
Identities = 2386/2562 (93%), Gaps = 51/2562 (2%)
Strand=Plus/Plus
Query 1 TTTT-GCAATTTTCTCTTTTTGATTCTCCT-CTCCCTTGGAATCCA-CACTTTCAATTTG 57
|||| ||||||||||||||||||||||| | || |||||||||||| ||| || |||||
Sbjct 3 TTTTCGCAATTTTCTCTTTTTGATTCTCTTCCTTCCTTGGAATCCACCACACTCCATTTG 62
Query 58 GTGCTTCTGAGATCTGATCTC-CT-C--GGTGATGCGCTACGGAGATGGCGAATCTTGTC 113
| |||||||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 63 CTTCTTCTGAGATCTGATCTCTCTCCTAGGTGATGCGCTGCGGAGATGGCGAATCTTGTC 122
Query 114 CCCGGTGTTTTGCTCAAGCTTCTCCAGCACATGAACACCGACGTCAAAATCGCCGGCGAA 173
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CCCGGCGTTTTACTCAAGCTTCTCCAGCACATGAACACCGACGTCAAAATCGCCGGCGAA 182
Query 174 CACAGGTCCTCTCTTCTACAAGTCGTCAGTATTGTTCCCGCTTTGGCCGGAGGTGAGCTT 233
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 183 CACAGGTCCTCTCTTTTACAAGTCATCAGTATTGTTCCCGCTTTAGCCGGAGGTGAGCTA 242
Query 234 TTCCCGAATCAAGGCTTTTATCTCAGAGTCTCTGATTCTTCTCACGCCACTTATGTCTCT 293
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 243 TTCCCGAATCAAGGCTTTTATCTCAAAGTCTCTGATTCCTCTCACGCCACTTATGTCTCT 302
Query 294 TTACCTGATGAGCACGATGATTTGATTCTTAGCGATAAGATCCAATTAGGTCAGTTTATT 353
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 303 TTACCTGATGAACACGATGATTTGATTCTTAGCGACAAGATCCAATTAGGTCAGTATATT 362
Query 354 CATGTCGATAGAGTCGAATCTTCTTCTCCTGTTCCTATTCTTCGTGGTGTTAGGCCTGTT 413
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 363 CATGTTGATAGAGTCGAATCTTCTTCCCCTGTTCCTATTCTTCGTGGTGTTAGACCTGTT 422
Query 414 CCTGGTAGACATCCTTGTGTTGGT-ACTCCTGAAGATATTGTAGCTACTCACTCGCTAGG 472
|||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||
Sbjct 423 CCTGGTAGACATCCTTGTGTTGGTGA-TCCTGAAGATATTGTAGCTACTCATTCACTAGG 481
Query 473 GTTTCTCTGTGATGACAACAAGGTT---AATGATAATAATGGTGTTGCTAATTCGAAACC 529
||||||| |||||| |||||||| |||||||||||||||| || || |||||||||
Sbjct 482 GTTTCTCAGTGATG---ACAAGGTTAAAAATGATAATAATGGTGGTGTTAGTTCGAAACC 538
Query 530 GAAAGAGAGAGTTAAGGCATCTGTTATTAAAGGAGGAGTGGTGTCTAATGGGAGTGGAAG 589
||||||||||||||||| |||| || | | | | ||||||||||||||||
Sbjct 539 TAAAGAGAGAGTTAAGGCGTCTG---TT--A--A--A-----G-CTAATGGGAGTGGAAG 583
Query 590 TGAGGGTGAGAGAA-TACTAGGTAATAGACTGAGTGTTAGTATCTCTAGGGATCAATCTT 648
||| |||||||||| || ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 584 TGATGGTGAGAGAATTA-TAGGTAATAGACTGAGTGTTAGTATCTCTAGGGATGATTCTT 642
Query 649 CCGAGGGTAAAAAGCCCGTGTCTGCTCTATTTCGAGCCAAATCTGCCAAATCGAGTTTGA 708
| || ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct 643 CTGATGGTAAAAAGCCGGTGTCTGCTCTATTTCGAGCTAAATCTGCGAAGTCGAGTTTGA 702
Query 709 CTTTGGATGTAAAGAAGGAATCTTTGGGGAAGCTTAAGACTTCTTCGGGTTCTAAGTCTA 768
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 703 GTTTGGATGTAAAGAAGGAATCTTTGGGGAAGCTCAAGACTTCTTCGGGTTCTAAGTCTA 762
Query 769 TTCCTTCTTCGCCTACGAGTTGTTACTCACTGCCTAACTCTTTTGCAAAGTTTGCAAATG 828
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 763 TTCCTTCTTCCCCTACGAGTTGTTACTCACTGCCTAATTCTTTTGCAAAGTTTGCTAATG 822
Query 829 GGATTAAGCAGCAGCAGAATGTGAAGCCAAAGTTATTGGAGAAGGGTTCTCCTAGAATGG 888
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGATTAAGCAGCAACAGACTGTGAAGCCAAAGTTATTGGAGAAGGGTTCTCCTAGAATGG 882
Query 889 GGTTGTCAGATAAGGGGCGGTCTCTTCTCAAGGCGGAGAGTCCGAAAGTTGGGAAAAAGC 948
|||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 883 GGTTGTCAGAGAAGGGCCGGTCTCTTCTTAAAGCGGAGAGTCCGAAAGTTGGGAAAAAGC 942
Query 949 TTCCCATGATTAAGAATTTTGTGCAGGGGATTGAGTTTGGAGCTAAGGCGTTGAGGAAAA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTCCCATGATTAAGAATTTTGTGCAGGGGATTGAGTTTGGAGCTAAGGCGTTGAGGAAAA 1002
Query 1009 GCTGGGAAGGGAATTTAGAAATCAGGAGTTCA-A-----CAAAATCCAACCTTTCCAGAC 1062
||||||||||||||||||| |||||| ||||| | ||||||||| |||| ||||||
Sbjct 1003 GCTGGGAAGGGAATTTAGATATCAGGGGTTCAGATAGAACAAAATCCAGCCTTCCCAGAC 1062
Query 1063 GTGATTTAACCCCTGATTCCCGGAGTTTAGCGGCTCCACGGAAAAGCACATCAAGTGAGA 1122
||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 1063 GTGATTTAACCCCTGATTCCCGGAGTTTAGCAGCTCCACGGAGAAGCACATCGAGTGAGA 1122
Query 1123 AGTTGCCAAGCAAACAGGAGAGGGCTAATGTATTTGCAAGATCATCAAAGGAGCACAATA 1182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 AGTTGCCAAGCAAACAGGAGAGGGCTAATGTATTTGCAAGATCATCGAAGGAGCACAATA 1182
Query 1183 AGATTCAGTCAACCAAGAAAATCGAGACAACCACAATATTGGACACCAAAGATAAAACGA 1242
|||| ||||||||||||||| ||||| |||| || | ||||||||||||||||||||||
Sbjct 1183 AGATACAGTCAACCAAGAAAGTCGAGCCAACTGCAGTGTTGGACACCAAAGATAAAACGA 1242
Query 1243 GTAGGCCTAAATCTACATCTGTCGAGAAGAAATCTATTGCAGAGAATGGGTTGCCTGGGA 1302
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1243 GTAGGCCTAAATCTACATCTGTCGAGAAGAAATCTGTTGCAGAGAATGGATTGCCTGGGA 1302
Query 1303 ATTTGGTCAAAGTCCCTGTTAATAGTAAAAGATTAGCGGCGGCCAATATCCAATGGAGTT 1362
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1303 ATTTGGTCAAAGTCTCTGTTAATGGTAAAAGATTAGCGGCGGCCAATATCCAATGGAGTT 1362
Query 1363 CACTCCCTTCATCTCTTTCGAGGATGGGACAGGAAGTCCTGAGGCATAGAGATGCTGCTC 1422
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1363 CACTCCCTCCATCTCTTTCGAGGATGGGACAGGAAGTATTGAGGCATAGAGAAGCTGCTC 1422
Query 1423 AAGTTGTCGCAATAGAGGCCCTGCAAGAAGCCTCTGCTTCCGAGAGCTTACTTCAATGCC 1482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 AAGTAGTCGCAATAGAGGCCCTGCAAGAAGCCTCTGCTTCCGAGAGCTTACTTCAGTGCC 1482
Query 1483 TCATTATGTACTCCGATCTTTTGTCAACGGCGAAGGAAGATGATCCATTGCCAGTCGTTG 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TCATTATGTACTCCGATCTTTTGTCAACGGCGAAGGAAGATGATCCATTGCCAGTCGTTG 1542
Query 1543 AGCAGTTCTTGAAGCTCCATTCCGGTTTGAAGAACGTCCAAATAATAACAGAGTCATTGT 1602
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1543 AGCAGTTCTTGAAGCTCCATTCCGGTTTGAAAAACGTCCAAGTAATAACAGAGTCATTGT 1602
Query 1603 CCAAATTAATTTCGTCGACGTCCTCCCCAGAAAATGAAGAAAACAGATCCGAGGAAGCTA 1662
|||||||| | || | || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1603 CCAAATTACTCTCTTTGATGTCCTCCCCAGATAATGAAGAAAACAGATCCGAGGAAGCTA 1662
Query 1663 TAAAAGCGGCATCAGAAAAGCAGAAATTGGCAGCCTCATGGGTCCAAGCTGCGTTAGTCA 1722
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TAAAAGCGGCATCGGAAAAGCAGAAATTGGCAGCCTCATGGGTCCAAGCTGCGTTAGTCA 1722
Query 1723 CTAACTTATCGCCCTTCTCTGTCTACTCCAGCAAACAAGCCAAACTTGCTGCATCCAGAA 1782
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1723 CTAACTTATCGCCCTTCTCTGTCTACTCCAGCAAACAAGCCAAACTTGCTGCCTCCAGGA 1782
Query 1783 GCAAACCTGTGATCATACTCGAGAGCCCGGGTAATAATTCCTCTGGTAAAACCCGTGGGA 1842
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1783 GCAAACCCGTGATCATACTCGAGAGCCCGGGTAATAATTCCTCTAGTAAAACCCGTGGGA 1842
Query 1843 C-AGTCCAAAACAAGCCAACGATTGGATCCAAACTCGTAGCACAAGGCATGATCCGTAAA 1901
| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1843 ATATTC-AAAACAAGCCAACGATTGGATCTAAACTCGTAGCACAAGGAATGATCCGTAAA 1901
Query 1902 CACAGGGAGAACAGTAGCAGCCA-AAAGGCCACCTCAGTAGCAGGTTCGGAGTCTCCACC 1960
||||||||||||||||||||||| |||| ||||||| |||||||| || |||||||||||
Sbjct 1902 CACAGGGAGAACAGTAGCAGCCAGAAAG-CCACCTCGGTAGCAGGGTCAGAGTCTCCACC 1960
Query 1961 GCTAAACTGGGTGAAAGGGAATGGTCTAAACGAGGCAACTGATCTGGCAGAGAAGTTGCA 2020
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 GTTAAACTGGGTGAAAGGGAATGGTCTAAACGAGGCAACTGATCTGGCAGAGAAGTTGCA 2020
Query 2021 AATGGTTTCACAAGATTGGTTTTTGGGTTTCGTAGAGAGATTCTTGGACGCTGATGTGAT 2080
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2021 AATGGTTTCACAAGATTGGTTTTTGGGTTTCGTAGAGAGATTCTTAGACGCTGACGTGAT 2080
Query 2081 TACATCATCGAATCTGAATCTGTCCGACAACGGGCAGATAGCGGGGATGCTGTCGCAGCT 2140
||||||||| | ||| | |||||| || || |||||||| |||||||||||||| |||||
Sbjct 2081 TACATCATCCAGTCTCAGTCTGTCTGATAATGGGCAGATTGCGGGGATGCTGTCTCAGCT 2140
Query 2141 GAAGAGTGTGAATGATTGGTTAGACGAGATAGGGTCGAAAGAGGATGAAGAAGGATTACA 2200
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2141 GAAGAGTGTGAATGATTGGTTAGACGAGATTGGATCGAAAGAGGATGAAGAAGGGTTACA 2200
Query 2201 AGAAGTCTCTAAAGAAACAATCGATAGATTACGGAAGAAGATCTATGAGTATCTGCTCAC 2260
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2201 AGAAGTCTCTAAGGAAACAATCGATCGATTACGGAAGAAGATCTACGAGTATCTGCTCAC 2260
Query 2261 ACATGTGGAGTCAGCAGCTGCGGCACTTGGTGGTGGTGGTGGCTCAGTCTCTTCTCCTAG 2320
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2261 ACATGTGGAGTCAGCAGCTGCAGCACTTGGTGGTGGTGGTGGCTCAGTCTCTTCTCCTAG 2320
Query 2321 ACCCAAACCAATCGAAACCAAAGCAAAAAGATAAATGATGA--ATGAAGCTTCTACTTAT 2378
||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |
Sbjct 2321 ACCTAAACCAATCGAAACCAAAGCAAAGAGATAAATGATGATGAAGAAGCTTCTACTTGT 2380
Query 2379 TTGTTTTTCTT-T-GTATATATGAAAATTGGCGGCCAATTTCTTCTGTATAATTCAATTC 2436
|| ||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2381 TTTTTTTTTTTCTTGTATATATGAAAATTGGCGGTCAATTTCTTCTGTATAATTCAG--- 2437
Query 2437 AGACATCACTAAGAAGCCTACCGACGTGAAACGTTGGTATTTTTTATTCAGTCAGATACT 2496
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2438 -G-CATCACTAAGAAGCCTACCGACGTGAAATGTTGGTATTTTTTATTCAGTCAGATACT 2495
Query 2497 GACTAAAGAGAACCTATTGGTTCGAAAGATTTCAATATATTT 2538
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 2496 CACTAAAGAGAACCTATTGGTTCGAAAGATTTCAACATATTT 2537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125969193873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5