BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470953
Length=4058
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08800.1 | Symbols: | Protein of unknown function, DUF593 |... 5252 0.0
> AT1G08800.1 | Symbols: | Protein of unknown function, DUF593
| chr1:2813061-2817639 REVERSE LENGTH=4026
Length=4026
Score = 5252 bits (2844), Expect = 0.0
Identities = 3504/3817 (92%), Gaps = 67/3817 (2%)
Strand=Plus/Plus
Query 284 AAAAGATTTGAAGCCTGATTGAGTCTTGATCTTATGTTTCTGCAAAAAGATGCCTACTAG 343
|||| ||||||||||||||||| ||||||||||||||||||||||| || || |||||||
Sbjct 212 AAAACATTTGAAGCCTGATTGATTCTTGATCTTATGTTTCTGCAAAGAGTTGGCTACTAG 271
Query 344 AAAAATGTCTGCAGTTAAATCACAGATGGGTTCCCGGAGTTTCACTAGAGCTTTGGCATT 403
| ||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 272 ACAAACGTCTGCAGTAAAATTACAGATGGGTTCACGGAGTTTCACTAGAGCTTTGGCATT 331
Query 404 AGCCTTTAATGAGTGGCTACTGATGTTCATGCTCTTTGTTAACTCCATCTTCTCCTACGT 463
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 332 AGCCTTTAATGAGTGGCTACTGATGTTCATGCTCTTCGTTAACTCCATATTCTCTTACGT 391
Query 464 GATCGCTAGGTTTGCAGATTACTCTGAGCTTCAATCTCCATGTCTGATGTGCTCAAATCT 523
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GATCGCGAGGTTTGCAGATTACTCTGAGCTTCAATCTCCATGTCTGATGTGCTCAAATCT 451
Query 524 TGATCATATTCTCGGGAGGACAAAACATTCGAAGAAAACTCATTGGGATATGATTTGCTC 583
||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 452 TGATCATATTCTCAGGAGGACAAAAGATTTGAAGAAAACTCATTGGGATATTATTTGCTC 511
Query 584 TAAACACAAATCAGAGATCTCGTCATTGGTTTACTGTCATGCTCACGGCAAGCTTGTTGA 643
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 512 TAAACACAAATCAGAGATCTCTTCATTGGTTTACTGTCATGCTCACGGCAAGCTTGTTGA 571
Query 644 TGTCCGTGGAATGTGCGAAACTTGCCTCTTCTCTTTTGCTACAACCAATAAGTCAAATGC 703
||||||||||||||| || ||||| || ||||| |||||||||||||||||||| |||||
Sbjct 572 TGTCCGTGGAATGTGTGAGACTTGTCTTTTCTCGTTTGCTACAACCAATAAGTCCAATGC 631
Query 704 TGAAACTTACAGATTGTTGGTTGGTAAATTGGGTGATA-ATTCTTACTTTGGATCCAAGA 762
|||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||||||||
Sbjct 632 TGAAACTTACAGATTGTTGGTTGGTAAACTGGGTGA-AGATTCTCACTTCGGATCCAAGA 690
Query 763 GTGATCGCAGCACAA-ATCCAAATTGCTCTAAACTTACAGATTGTACATGTTGCAATCAG 821
||||||| |||| || |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 691 GTGATCGAAGCA-AATATCCAAATTGCTCTAAGCTTACAGATTGTACATGTTGTAATCAG 749
Query 822 TTGTGGGGGCCTCAAACCGCTGCTACTCTGGTGGCTGAACGGGAAATGCTACCCAAGATT 881
|||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 750 TTGTGGACGCCTCAAACCGCTGCTACTCAGGTGGCTGAACGGGAAATTCTACCCAAGATT 809
Query 882 GGTCTGCTTAGTAAAGTCCGAACCGGGAAGCAATCTACACCCAAGAAAAGTGTCAGCTTC 941
||| ||||| ||||| | ||||||||||||| ||| | |||||||||||||||||||||
Sbjct 810 GGTTTGCTTGGTAAAATAAGAACCGGGAAGCAGTCTGCGCCCAAGAAAAGTGTCAGCTTC 869
Query 942 AATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACTGAATCAGAA 1001
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 870 AATCATTTGCCTGATGTTGGGTACACTGAGCTAAAGATTCATTCAGATACTGAATCAGAG 929
Query 1002 GCTCTATTTTCAGATACTGAACCAAAGCAAGAATCTTCATC-TAGCCATTT--CACTCAT 1058
||| | ||||||||||||||||||||||||||||||||| | || |||||| ||| | |
Sbjct 930 GCTGTGTTTTCAGATACTGAACCAAAGCAAGAATCTTCA-CTTAACCATTTGCCAC-C-T 986
Query 1059 GTTGGGTACAATGAGCCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGAGAAACCATCT 1118
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 987 GTTGGGTACAATGAGCCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGGGAAACCATCT 1046
Query 1119 ACACCCAAGAAGAGTGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ACACCCAAGAAGAGTGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAG 1106
Query 1179 ATCCATTCAGATACTGAATCAGAAGCTGTATTTTCAGAAGATGAAGGTGTCGTCCTAAAA 1238
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 1107 ATTCATTCAGATACTGAATCAGAAGCTGTATTCTCAGAAGATGAATGTGTCGTCCTTAAA 1166
Query 1239 GATGAGGATCATAAGTATCAAACCGTGGATCTTGAGACTCCTCCAATTATCACCCTGCCT 1298
|||||||||||||||||||||| ||||||||| |||||| ||| ||||||||| |||||
Sbjct 1167 GATGAGGATCATAAGTATCAAATAGTGGATCTTCAGACTCATCCGATTATCACCTTGCCT 1226
Query 1299 TATGATTTGGCTACCGACAAGCTGCTAAACTTTGATTTCCCTTTGGAGCCTTTAC-TGAC 1357
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1227 TATGATTTGGCTACCGACAAGCTGCTAAACTTTGATTTCCCTTTGGAGCCCTT-CGTGAC 1285
Query 1358 TCTAAATGACCGAGAAGAAGTTCATTTGCAAGAGAGCAAATGGAGAACTTATTCCTCATT 1417
|| |||||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||||
Sbjct 1286 TCGAAATGACCGAGAGGAAGTTCAGTTGCAAGAGACCAATTGGAGGACTTATTCCTCATT 1345
Query 1418 TCCCGAGATTATCCCAGTTAATGATGTGCCTGAAGCATCAGAGAAGGTTTTTAAGGAGGA 1477
||| | | |||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1346 TCCTGTGCTTATTCCAGTTAATGATGTGCCTGAAACATCAGAGAAGGTGTTCAAGGAGGA 1405
Query 1478 AGAGATCAATTCATTAGATAATCTTTTCTTAACATCACGCGCCATGGAACATTTTGCAGC 1537
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 AGAGATCAATTCATTAGATAATCTTTTCTTAACATCACGCGCCATGAAACATTTTGCAGC 1465
Query 1538 TTTTCCAAAGAAGAAAGAAGAGCCGATTCGACTCCAAGGTATTTCCTTAACACCAGAT-T 1596
| ||||| |||||||||||||||||| ||||||| |||||||| |||||||||| |
Sbjct 1466 ---TGCAAAGGTGAAAGAAGAGCCGATTCGCCTCCAAGATATTTCCTCAACACCAGATGT 1522
Query 1597 TCAAGGAAAATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGTCTCAATG 1656
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1523 T-AAGGAAAATCCTGCAAATGCCTCCTTGATGGAGGAGACTGAGCTTATTTGTCTCAGTG 1581
Query 1657 ATTTTACTTCAACATCACGCGCCATGGAACATTCTGAAGTTATTTTAAAGGAGAGAGAAG 1716
|| ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1582 ATGTTACTGCAACATCAGGCGCCATGGAACATTCTGAAGTTATTCTAAAGGAAAGAGAAG 1641
Query 1717 AACCGCTTCACCTCCTAGATATTTCTGTAACACCAGATTTTAAGGAAAATCCTGCAAATT 1776
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 AACTGATTCACCTCCAAGATATTTCTGTAACACCAGATTTTAAGGAAAATCCTGCAAATG 1701
Query 1777 CCTCATTAATGGAGGAGACTGAGCTTGTCTGCT-TCAATGATGTTATTTCACCATCACGT 1835
|||| ||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||
Sbjct 1702 CCTCCTTATTGGAGGAGACTGAGCTTATCTG-TCTCAATGATGTTACTTCACCATTACGC 1760
Query 1836 GCCATTGAACATTCTGAAGCTGTTTTAAAGGATAAAGAAGAGCCGATTCGCCTCCAAGA- 1894
||| | |||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 1761 GCCGTGGAACATTCTGCAGTTCTTTTAAAGGATAAAGTAGAGCCGATTCGCCTCCAAGAT 1820
Query 1895 --TAGTTCTTCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAG 1952
| |||||| |||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 1821 GGTGGTTCTTTAACACCAGATTTTATGGAAAATTCTGCAAATGCCTCCATATTGGAAGAG 1880
Query 1953 ACTGAGCTTATTTGCGTCAATGATGTTACTTCAACATCACACGCCATGGAACATTCTGCA 2012
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 1881 ACTGAGCTTATTTGCGTCAATGATGTTACTTCAACATCACGCACCATGGGACATTCTTCA 1940
Query 2013 GTTATTTTAAAGGAGAATGAAGAGCCGATTTGCTTCCAAGATA-TATCTTTAACACCAGA 2071
||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 1941 GTTGTTTTAAAGGAGAATGAAGAGCCGATTCGCTTCCAAGATAGT-TCTTTAACACCAGA 1999
Query 2072 TTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATCTGCCTCAA 2131
||| |||||| ||||||||| | |||||||| ||||||||||| ||||||||||||||||
Sbjct 2000 TTTTAAGGAAAATCCTGCAAGTACCTTCTTAGTGGAGGAGACTGAGCTTATCTGCCTCAA 2059
Query 2132 TGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGATAAAGC 2191
||| ||||||||| ||||| |||||||||||||||| ||||| |||||||||| ||||
Sbjct 2060 TGATGTTACTTCACCATCACGCGCCATGGAACATTCCACAGTTTTTATAGAGGAGAAAGA 2119
Query 2192 AGAGCTGGTTCGCCACGAAGATATAAC-TTCAACACCA-GATTTTAAGGAAAATCCTGCA 2249
|||||||||||||||| || |||| || || |||| || ||||||| ||||||||| |||
Sbjct 2120 AGAGCTGGTTCGCCACCAAAATATTACATT-AACA-CAGGATTTTATGGAAAATCCGGCA 2177
Query 2250 AATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATCA 2309
||| ||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 2178 AATTCCTCCTTAAGGGAAGAAACTGAGCTTATTTGCCTCAATGATGTTACTTCAACATCA 2237
Query 2310 GAGGCTGCTGAAACTCTTGAAGTTGTTTTAGAGGGAATTGAACTTATGTCCATCCATGAT 2369
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 2238 GAGGTTGCTGAAACTCCTGAAGATGTCTTAGAGGGAATTGAACTTATGTCAATCCATGAT 2297
Query 2370 A-AGTCTCTTGAAGAGGTTCCTCAATCACTCACTACAGATGAAACCTCTGTTGAGATGTC 2428
| | ||||| || |||||| || ||||| |||||||| || |||||||||||||||| ||
Sbjct 2298 ATA-TCTCTAGACGAGGTTTCTGAATCAGTCACTACAAATCAAACCTCTGTTGAGATTTC 2356
Query 2429 AAAGGAGAGCGACACTCACCAAGCTGATATTAACTCTCTGGAATCTGAATATATTGTTGT 2488
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2357 AAAGGAGAGGGACACTGACCAAGCTGATATTACCTCTCTGGAATCTGAATATATAGTTGT 2416
Query 2489 ACCATCTCCAAATTCCATGCCTGAAAATTCAACCGAAAATTGTGTATCAGACAACAAA-G 2547
|||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
Sbjct 2417 ACCATCTCCAAATTCCATGCCTGAAAATTCAACCGATAATTGTGTATCAGATAA-AAAGG 2475
Query 2548 AAATGAAAGAGACATCTCTTACGG-TCTCTTCATTGTCTGAAATGGCTCCACGGGACGTC 2606
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2476 AAATGAAAGAGACATCTCTTA-GGATCTCTTCATTGTCTGAAATGGCTCCACGGGACGTC 2534
Query 2607 ACTTCTCACACAGAAGCAGCTCTTGAGTCAGAATCTTCTTCCTTCAACTCAATGTCGGTG 2666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2535 ACTTCTCACACAGAAGCAGCTCTTGAGTCAGAATCTTCTTCCTTCAACTCAATGTCAGTG 2594
Query 2667 GCAGCAGAAACAAATCAATATTCAGGTGAGTTACTGGACCTTGCGGATGCATATAATATC 2726
|||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 2595 GCAGCAGAAACAAACCAATATTCAGGTGAATTACTGGATCTTGCAGATGCATACAATATC 2654
Query 2727 ATTGTAGGAAATGAGGGTAACAACGATAGCAATGGAAGACAAAAAATAGAGAATTGGATG 2786
|||||||||| || ||| || | ||||| |||||||||||| |||||||||||||||||
Sbjct 2655 GTTGTAGGAAACGAAGGTCACTATGATAGTAATGGAAGACAACAAATAGAGAATTGGATG 2714
Query 2787 AAGAAAGATACTTCTAGAGTTAGCGAAGACCTTAAAGCACTTCTAACTCAAATATCAGCT 2846
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2715 AAGAAAGATACGTCTAGAGTTAGCGAAGACCTTAAAGCACTTCTTACTCAAATATCAGCT 2774
Query 2847 TCTCGAGGGATAGAGTTTTTGTCGCCTAGAGATGTAAGCCCGAAGATATCTGTTAACAGT 2906
||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 2775 TCTCGTGGGATAGAGTTTTTGTCACCTAGAGATGTAAGCCCCAAGATTTCTGTTAACAGT 2834
Query 2907 AGTGATCAGGAGACAAAGAACCTAGATCATGATATGCAGCTGCTACTTCAGAAGAGAATG 2966
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2835 AGCGATCAAGAGACAAAGAACCTAGATCATGATATGCAGCTGCTACTTCAAAAGAGAATG 2894
Query 2967 CTTGAAAGGAACGAGAGTAACTTATCGTTGGAAGAAGTCTCTGTGAGTGAAATCGAGGGA 3026
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 2895 CTTGAAAGGAACGAGAGTAACTTATCGTTGGAAGGAGTTTCTGTGACTGAAATCGAGGGT 2954
Query 3027 GAAAGTGAGAGTGATCGGTTGAAAAGGCAGGTTGATTACGACAGGAAATTGCTGACTGGT 3086
||||||||| |||||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 2955 GAAAGTGAGGGTGATCGGTTGAAAAGACAGGTTGATTATGATAGGAAACTGCTGACTGGT 3014
Query 3087 TTATATAAAGAATTAGAGGAAGAAAGAAGTGCTTCAGCGGTAGCTACAAATCAAGCAATG 3146
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 3015 TTATATAAAGAATTGGAGGAAGAAAGAAGCGCTTCAGCGGTTGCTACAAATCAAGCAATG 3074
Query 3147 GCTATGATTACGAGGTTGCAGGAAGAGAAGGCGTCATTCCAAATGGAAGCTTTGCAGAAC 3206
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3075 GCTATGATAACGAGGTTGCAGGAAGAGAAGGCGTCATTCCAAATGGAGGCTTTGCAGAAC 3134
Query 3207 CTGAGGATGATGGAAGAGCAAGCAGAGTATGACATGGAAGCAATACAGAGACTGAATGAT 3266
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3135 CTGAGGATGATGGAGGAGCAAGCAGAGTACGATATGGAAGCAATACAGAGACTGAATGAT 3194
Query 3267 TTACTTGTTGAGAGAGAAAAACTAATTCAAGATTTAGAAGCTGAGATTGAATACTTCCGG 3326
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3195 TTACTTGTTGAGAGAGAAAAACTAATACAAGATTTAGAAGCTGAGATTGAATACTTCCGG 3254
Query 3327 GACCAGACCCCGCAGAAGAAGAATAAGCTAGATGTTCCAGAAAAGGTGACTGAGATGGAT 3386
||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 3255 GACCAGACCCCTCAGAAGAAGAATAAGCTAGATGTTGCAGAAAAAGTGACCGAGATGGAT 3314
Query 3387 TCGCCTAGTGAGGGAATGAGCAACAAGATACAGAGTTGTTTAGTTGGGTTCGACGAAGAG 3446
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3315 TCCCCTAGTGAGGGAATGAGCAACAAGATACAGAGTTGTTTAGTTGGGTTCGACGAAGAG 3374
Query 3447 AGATTATATATCACCAGTTGTTTGGAGAAGATTGAAAACAGAGTAAATGGCGAGGCTCAT 3506
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 3375 AGATTATACATCACCAGTTGTCTGGAGAAGATTGAAAACAGAGTAAATGGCAAGGCTCAT 3434
Query 3507 GGCGATAATCTACCAGCACAAGAATCTGTCTCTGAGCTACATGAGAGAGTAGAAATGCTG 3566
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 3435 GACGATAATCTACCAGCACAAGAATCTGTTTCTGAGCTACATGAGAGAGTAGAAAGGCTG 3494
Query 3567 AAGGGAGACTTATACTTTCTAGAACAGGTTATGAATTCTCTCGGGCACGGGAAGGAAGGC 3626
||||||||||||||||| |||||||| |||||||||||||| || || || || ||||||
Sbjct 3495 AAGGGAGACTTATACTTCCTAGAACAAGTTATGAATTCTCTTGGCCATGGAAATGAAGGC 3554
Query 3627 GTGGAATTTGTCAAGGAAATAGCTTCTCATTTGCAAACTCTGCGGAGTGTCGGCATGAAA 3686
||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3555 GTGCAATTTGTAAAGGAAATAGCTTCTCATTTGCAAACTCTGCGGAGTCTCAGCATGAAA 3614
Query 3687 AGACAAAATCATACAGAGAGTTGATGCCCTGGGTAACAACCTTCACAAAGTCACCTTTGT 3746
|||||| |||| || ||| ||||||| |||| ||||||| |||||||||| |||||||||
Sbjct 3615 AGACAAGATCAGACTGAGTGTTGATGTCCTGAGTAACAATCTTCACAAAGACACCTTTGT 3674
Query 3747 GGAGAGGATATTGTAGAGGAAACTAAACA-AAGTTCAAGAGTGGTGAGAAAAGCTTAAAG 3805
||||||||||||||||||||||||||| | |||||||||| | | | | ||||||||||
Sbjct 3675 GGAGAGGATATTGTAGAGGAAACTAAA-AGAAGTTCAAGA-T--TCA-AGAAGCTTAAAG 3729
Query 3806 GAACTGTATAGCATC--C--C-TT---T-C-------GTATACAAAAATATCAGATTT-T 3848
|||||||||||||| | | || | | |||||| | ||| ||||| || |
Sbjct 3730 AAACTGTATAGCATCGTCTTCATTGCCTTCCCCTTTCGTATACGATAATCTCAGAATTCT 3789
Query 3849 TTACAATTTCATTTTTGGGTTTGGTGTTCATAATT-CCTTGTGGGTTTTCACATTCTTTG 3907
|||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct 3790 TTACGATTTCATTTTTGGGTTTGGTGTTCATAATTTCCTTATGGGTTTTCATATTCTTTG 3849
Query 3908 TGTTTGTTTTACATTTTTCTTCTAGATTTTGAGTGAAGAGTGAATGTGGGTTTTGTTCTG 3967
||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3850 TGTTTATTTTGCATTTTTCTTCTAG-TTTTGAGTGAAGAGTGAATGTAGGTTTTGTTCTG 3908
Query 3968 AAGTTCTCATTTGAtttttttttttAGATTG----ATACTTTTGTTTAGCATGTTAAAAG 4023
|||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||
Sbjct 3909 AAGTTCTCATTTGATTTTTTTTATTAGGTTGGTTGATACTTTTGTTTAGCATGTCAAAAG 3968
Query 4024 AGTCATGCAACTTTGT-AA-CTTATTGTACATTTCTT 4058
|||||||||||||| || ||| |||||||||||||
Sbjct 3969 --TCATGCAACTTTGTTAAACTTGTTGTACATTTCTT 4003
Score = 621 bits (336), Expect = 2e-176
Identities = 556/661 (84%), Gaps = 20/661 (3%)
Strand=Plus/Plus
Query 1658 TTTTACTTCAACATCACGCGCCATGGAACATTCTGAAGTTATTTTAAAGGAGAGAGAAGA 1717
|||| ||| |||||||||||||||| |||||| || || | ||||| || ||||||
Sbjct 1429 TTTT-CTT-AACATCACGCGCCATGAAACATTTTGCAG---CTGCAAAGGTGAAAGAAGA 1483
Query 1718 ACCGCTTCACCTCCTAGATATTT-CTGTAACACCAGATTTTAAGGAAAATCCTGCAAATT 1776
||| ||| ||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1484 GCCGATTCGCCTCCAAGATATTTCCT-CAACACCAGATGTTAAGGAAAATCCTGCAAATG 1542
Query 1777 CCTCATTAATGGAGGAGACTGAGCTTGTCTGCT-TCAATGATGTTATTTCACCATCACGT 1835
|||| || |||||||||||||||||| | || | ||| |||||||| | || ||||| |
Sbjct 1543 CCTCCTTGATGGAGGAGACTGAGCTTATTTG-TCTCAGTGATGTTACTGCAACATCAGGC 1601
Query 1836 GCCATTGAACATTCTGAAGCTGTTTTAAAGGATAA-AGAAGAGCCGATTCGCCTCCAAGA 1894
||||| ||||||||||||| | || ||||||| || |||||| | ||||| |||||||||
Sbjct 1602 GCCATGGAACATTCTGAAGTTATTCTAAAGGA-AAGAGAAGAACTGATTCACCTCCAAGA 1660
Query 1895 TAGTTCT-TCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAGA 1953
|| |||| | |||||||||||||| ||||||||||||||||||| ||||| |||| ||||
Sbjct 1661 TATTTCTGT-AACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGA 1719
Query 1954 CTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACACGCCATGGAACATTCTGCA 2012
|||||||||| || | ||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 1720 CTGAGCTTATCTGTC-TCAATGATGTTACTTCACCATTACGCGCCGTGGAACATTCTGCA 1778
Query 2013 GTTATTTTAAAGGAGAATGAAGAGCCGATTTGCTTCCAAGAT-AT--ATCTTTAACACCA 2069
||| |||||||||| || | |||||||||| || |||||||| | ||||||||||||
Sbjct 1779 GTTCTTTTAAAGGATAAAGTAGAGCCGATTCGCCTCCAAGATGGTGGTTCTTTAACACCA 1838
Query 2070 GATTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATCTGCCTC 2129
||||| | |||| || |||||||||||| | || |||| |||||| ||||||| ||| ||
Sbjct 1839 GATTTTATGGAAAATTCTGCAAATGCCTCCATATTGGAAGAGACTGAGCTTATTTGCGTC 1898
Query 2130 AATGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGATAAA 2189
||||| ||||||||||||||| || |||||| ||||||| |||||||| || |||| ||
Sbjct 1899 AATGATGTTACTTCAACATCACGCACCATGGGACATTCTTCAGTTGTTTTAAAGGAGAAT 1958
Query 2190 GCAGAGCTGGTTCGCCACGAAGATA-TAACTTCAACACCAGATTTTAAGGAAAATCCTGC 2248
| ||||| | ||||| | |||||| | ||| |||||||||||||||||||||||||||
Sbjct 1959 GAAGAGCCGATTCGCTTCCAAGATAGT-TCTTTAACACCAGATTTTAAGGAAAATCCTGC 2017
Query 2249 AAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATC 2308
|| | ||| |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 2018 AAGTACCTTCTTAGTGGAGGAGACTGAGCTTATCTGCCTCAATGATGTTACTTCACCATC 2077
Query 2309 A 2309
|
Sbjct 2078 A 2078
Score = 508 bits (275), Expect = 1e-142
Identities = 420/489 (86%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 1828 CATCACGTGCCATTG-AACATTCTGAAGCTGTTTTAAAGGAT-AAAGAAGAGCCGATTCG 1885
||||||| |||| || |||||| || ||||| ||||| | |||||||||||||||||
Sbjct 1438 CATCACGCGCCA-TGAAACATTTTGCAGCTG---CAAAGG-TGAAAGAAGAGCCGATTCG 1492
Query 1886 CCTCCAAGATAGTTCTTCAACACCAGATTTTATGGAAAATCCTGCAAATGCCCCCTTAAT 1945
||||||||||| ||| |||||||||||| ||| ||||||||||||||||||| |||| ||
Sbjct 1493 CCTCCAAGATATTTCCTCAACACCAGATGTTAAGGAAAATCCTGCAAATGCCTCCTTGAT 1552
Query 1946 GGAAGAGACTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACACGCCATGGAAC 2004
||| ||||||||||||||||| | ||| |||||||||| |||||||| |||||||||||
Sbjct 1553 GGAGGAGACTGAGCTTATTTGTC-TCAGTGATGTTACTGCAACATCAGGCGCCATGGAAC 1611
Query 2005 ATTCTGCAGTTATTTTAAAGGAGA-ATGAAGAGCCGATTTGCTTCCAAGATATATCTTTA 2063
|||||| ||||||| ||||||| | | ||||| | |||| | |||||||||| ||| ||
Sbjct 1612 ATTCTGAAGTTATTCTAAAGGAAAGA-GAAGAACTGATTCACCTCCAAGATATTTCTGTA 1670
Query 2064 ACACCAGATTTGAAGGAAGATCCTGCAAATGCCTTCTTAATGGAGGAGACTAAGCTTATC 2123
||||||||||| |||||| ||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1671 ACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGACTGAGCTTATC 1730
Query 2124 TGCCTCAATGAAGTTACTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAG 2183
|| |||||||| ||||||||| ||| | ||||| ||||||||||||||||| || || ||
Sbjct 1731 TGTCTCAATGATGTTACTTCACCATTACGCGCCGTGGAACATTCTGCAGTTCTTTTAAAG 1790
Query 2184 GATAAAGCAGAGCTGGTTCGCCACGAAGATA-TAA--CTTCAACACCAGATTTTAAGGAA 2240
||||||| ||||| | |||||| | ||||| | ||| |||||||||||||| ||||
Sbjct 1791 GATAAAGTAGAGCCGATTCGCCTCCAAGATGGTGGTTCTTTAACACCAGATTTTATGGAA 1850
Query 2241 AATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACT 2300
||| |||||||||||||| || |||| |||||||||||||||||| ||||||||| ||||
Sbjct 1851 AATTCTGCAAATGCCTCCATATTGGAAGAGACTGAGCTTATTTGCGTCAATGATGTTACT 1910
Query 2301 TCAACATCA 2309
|||||||||
Sbjct 1911 TCAACATCA 1919
Score = 483 bits (261), Expect = 8e-135
Identities = 421/495 (85%), Gaps = 23/495 (5%)
Strand=Plus/Plus
Query 1510 CATCACGCGCCATGGAACATTTTGCAGCTT-TTCCAAAGAAGAAAGAAGAGCCGATTCGA 1568
||| ||||||| ||||||||| ||||| || || |||| | |||| ||||||||||||
Sbjct 1753 CATTACGCGCCGTGGAACATTCTGCAG-TTCTTTTAAAGGATAAAGTAGAGCCGATTCGC 1811
Query 1569 CTCC-A-A-GGTATTTCCTTAACACCAGATTTCAAGGAAAATCCTGCAAATGCCTCCTTA 1625
|||| | | ||| ||| |||||||||||||| | ||||||| |||||||||||||| ||
Sbjct 1812 CTCCAAGATGGTGGTTCTTTAACACCAGATTTTATGGAAAATTCTGCAAATGCCTCCATA 1871
Query 1626 ATGGAGGAGACTGAGCTTATTTGTC-TCAATGATTTTACTTCAACATCACGCGCCATGGA 1684
|||| ||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 1872 TTGGAAGAGACTGAGCTTATTTG-CGTCAATGATGTTACTTCAACATCACGCACCATGGG 1930
Query 1685 ACATTCTGAAGTTATTTTAAAGGAGAGA-GAAGAACCGCTTCACCTCCTAGATATTTCTG 1743
||||||| |||| |||||||||||| | ||||| ||| ||| | ||| ||||| ||||
Sbjct 1931 ACATTCTTCAGTTGTTTTAAAGGAGA-ATGAAGAGCCGATTCGCTTCCAAGATAGTTCTT 1989
Query 1744 TAACACCAGATTTTAAGGAAAATCCTGCAAATTCCT-CATTAATGGAGGAGACTGAGCTT 1802
|||||||||||||||||||||||||||||| | ||| | ||| |||||||||||||||||
Sbjct 1990 TAACACCAGATTTTAAGGAAAATCCTGCAAGTACCTTC-TTAGTGGAGGAGACTGAGCTT 2048
Query 1803 GTCTGCTTCAATGATGTTATTTCACCATCACGTGCCATTGAACATTCTGA-AGCTGTTTT 1861
||||| |||||||||||| |||||||||||| ||||| |||||||| | || | ||||
Sbjct 2049 ATCTGCCTCAATGATGTTACTTCACCATCACGCGCCATGGAACATTCC-ACAG-T-TTTT 2105
Query 1862 A-A-AGGATAAAGAAGAGCCGATTCGCCTCCAAGATAGTT-C-TTCAACACCAG-ATTTT 1916
| | |||| |||||||||| | |||||| |||| ||| || | || ||||| || |||||
Sbjct 2106 ATAGAGGAGAAAGAAGAGCTGGTTCGCCACCAAAATA-TTACATT-AACAC-AGGATTTT 2162
Query 1917 ATGGAAAATCCTGCAAATGCCCCCTTAATGGAAGAGACTGAGCTTATTTGCGTCAATGAT 1976
||||||||||| |||||| || |||||| |||||| ||||||||||||||| ||||||||
Sbjct 2163 ATGGAAAATCCGGCAAATTCCTCCTTAAGGGAAGAAACTGAGCTTATTTGCCTCAATGAT 2222
Query 1977 GTTACTTCAACATCA 1991
|||||||||||||||
Sbjct 2223 GTTACTTCAACATCA 2237
Score = 324 bits (175), Expect = 5e-87
Identities = 280/330 (85%), Gaps = 10/330 (3%)
Strand=Plus/Plus
Query 1981 CTTCAACATCACACGCCATGGAACATTCTGCAGTTATTTTAAAGGAGAATGAAGAGCCGA 2040
||| |||||||| ||||||| |||||| ||||| | ||||| ||| ||||||||||
Sbjct 1433 CTT-AACATCACGCGCCATGAAACATTTTGCAG---CTGCAAAGGTGAAAGAAGAGCCGA 1488
Query 2041 TTTGCTTCCAAGATATATCTTTAACACCAGAT-TTGAAGGAAGATCCTGCAAATGCCTTC 2099
|| || |||||||||| || | |||||||||| || |||||| ||||||||||||||| |
Sbjct 1489 TTCGCCTCCAAGATATTTCCTCAACACCAGATGTT-AAGGAAAATCCTGCAAATGCCTCC 1547
Query 2100 TTAATGGAGGAGACTAAGCTTATCTGCCTCAATGAAGTTACTTCAACATCAAGCGCCATG 2159
|| |||||||||||| ||||||| || |||| ||| |||||| |||||||| ||||||||
Sbjct 1548 TTGATGGAGGAGACTGAGCTTATTTGTCTCAGTGATGTTACTGCAACATCAGGCGCCATG 1607
Query 2160 GAACATTCTGCAGTTGTTATAGAGGATAA-AGCAGAGCTGGTTCGCCACGAAGATATAAC 2218
|||||||||| |||| || || |||| || || ||| ||| ||| || | ||||||| |
Sbjct 1608 GAACATTCTGAAGTTATTCTAAAGGA-AAGAGAAGAACTGATTCACCTCCAAGATATTTC 1666
Query 2219 T-TCAACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTAATGGAGGAGACTGAGC 2277
| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1667 TGT-AACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCCTTATTGGAGGAGACTGAGC 1725
Query 2278 TTATTTGCCTCAATGATGCTACTTCAACAT 2307
|||| || |||||||||| ||||||| |||
Sbjct 1726 TTATCTGTCTCAATGATGTTACTTCACCAT 1755
Score = 193 bits (104), Expect = 1e-47
Identities = 130/143 (91%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 873 CCCAAGATTGGTCTGCTTAGTAAAGTCCGAACCGGGAAGCAATCTACACCCAAGAAAAGT 932
|||||||||||| || || || | || |||||||||| | ||||||||||||||| |||
Sbjct 1002 CCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGGGAAACCATCTACACCCAAGAAGAGT 1061
Query 933 GTCAGCTTCAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACT 992
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATTCATTCAGATACT 1121
Query 993 GAATCAGAAGCTCTATTTTCAGA 1015
|||||||||||| |||| |||||
Sbjct 1122 GAATCAGAAGCTGTATTCTCAGA 1144
Score = 174 bits (94), Expect = 5e-42
Identities = 147/172 (85%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 2140 CTTCAACATCAAGCGCCATGGAACATTCTGCAGTTGTTATAGAGGAT-AAAGCAGAGCTG 2198
||| ||||||| |||||||| |||||| ||||| || | | ||| | |||| ||||| |
Sbjct 1433 CTT-AACATCACGCGCCATGAAACATTTTGCAGCTG-CA-A-AGG-TGAAAGAAGAGCCG 1487
Query 2199 GTTCGCCACGAAGATATAACTTCAACACCAGATTTTAAGGAAAATCCTGCAAATGCCTCC 2258
|||||| | ||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1488 ATTCGCCTCCAAGATATTTCCTCAACACCAGATGTTAAGGAAAATCCTGCAAATGCCTCC 1547
Query 2259 TTAATGGAGGAGACTGAGCTTATTTGCCTCAATGATGCTACTTCAACATCAG 2310
|| ||||||||||||||||||||||| |||| ||||| |||| |||||||||
Sbjct 1548 TTGATGGAGGAGACTGAGCTTATTTGTCTCAGTGATGTTACTGCAACATCAG 1599
Score = 171 bits (92), Expect = 7e-41
Identities = 127/144 (88%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 1074 CCCAAGATTGGTTTGGTTGGTGATGTGAGAACCGAGAAACCA-TCTACACCCAAGAAGAG 1132
||||||||||||||| ||||| | | ||||||| | || || ||| | |||||||| ||
Sbjct 801 CCCAAGATTGGTTTGCTTGGTAAAATAAGAACCG-GGAAGCAGTCTGCGCCCAAGAAAAG 859
Query 1133 TGTCAGCTTTAATCATTTGCCTGATGTTGGGTACACTGAGCTCAAGATCCATTCAGATAC 1192
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 860 TGTCAGCTTCAATCATTTGCCTGATGTTGGGTACACTGAGCTAAAGATTCATTCAGATAC 919
Query 1193 TGAATCAGAAGCTGTATTTTCAGA 1216
||||||||| ||||| ||||||||
Sbjct 920 TGAATCAGAGGCTGTGTTTTCAGA 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 202222947233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5