BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470958
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08845.2 | Symbols: | Ribosomal L18p/L5e family protein | c... 985 0.0
> AT1G08845.2 | Symbols: | Ribosomal L18p/L5e family protein |
chr1:2838789-2840955 FORWARD LENGTH=705
Length=705
Score = 985 bits (533), Expect = 0.0
Identities = 578/600 (96%), Gaps = 1/600 (0%)
Strand=Plus/Plus
Query 20 CCATCGATTGCCAGGTGGGTTTCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCC 79
||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 107 CCATCGATTTCCAGGT-GGTTGCAGATATAATGTTGAAGCAAGTGGTTGCCAAGTATTCT 165
Query 80 ATAGGTAAAGCGGCCATCTATGGAAGTAACAGAGAAAATCTTAGACCTTTCCTGTGCCAA 139
|||||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 166 ATAGGTAAAGCGGCGATTTATGGAAGTAACAGAGAAAAGCTTAGACCTTTCATGTGCCAA 225
Query 140 ACCACTTGTCGGTTCCACAATGCACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 199
|||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 226 ACCAGTTGTCGATTCCACAATGGACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTA 285
Query 200 GAAGACTACGTGGATGATGACACAAGCCGGCCTTACACATACCAAAAAGAGAAAAAGTCG 259
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 286 GAAGACTACGTGGATGACGACACAAGCCGGCCATACACATACCAAAAAGAGAAAAAGTCG 345
Query 260 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTCGCATACATGGAGCCATTC 319
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 346 AAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTTGCATACATGGAGCCGTTC 405
Query 320 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACTCACCGTGTCACA 379
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 406 ACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACGCACCGTGTTACA 465
Query 380 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTCAAAGCTGTTCTGAGGTCA 439
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 TGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTAAAAGCTGTTCTGAGGTCA 525
Query 440 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCGGAGCGTGCAAAAGAA 499
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 526 AGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCTGAGCGTGCAAAAGAA 585
Query 500 GCTGATGTTTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAGATC 559
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 586 GCTGATGTGTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAAATC 645
Query 560 AGAGCCGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 619
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGAGCTGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5