BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470964
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08900.1 | Symbols: | Major facilitator superfamily protein... 2084 0.0
AT1G08890.1 | Symbols: | Major facilitator superfamily protein... 1511 0.0
> AT1G08900.1 | Symbols: | Major facilitator superfamily protein
| chr1:2852454-2855779 FORWARD LENGTH=1543
Length=1543
Score = 2084 bits (1128), Expect = 0.0
Identities = 1304/1389 (94%), Gaps = 12/1389 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTGAAAGTTTTGAATCTCCTCTGCTGAATAAGC---AAGAAGAAGCTTCTTCC 57
|||||||||||||| | ||||| | ||| |||||||||| |||||||||||||||||
Sbjct 25 ATGGAATCTGAAAGACTCGAATCACATCTTCTGAATAAGCAAGAAGAAGAAGCTTCTTCC 84
Query 58 TTCACTTCTGGTCTTATTCTCAGCACATCCGTCGTTGTCGCTGGATCATTCTCTTATGGC 117
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 85 TTCACTTCTGGTCTTCTTCTCAGCACATCCGTCGTTGTCGCTGGATCCTTCTGTTATGGC 144
Query 118 TGCGCCATGTCATATTCGTCGCCTGCTCAATCAAAAATTATGGAAGAACTGGGACTTT-C 176
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
Sbjct 145 TGCGCCATGTCATATTCGTCGCCTGCTCAGTCCAAAATCATGGAAGAACTGGGACTTTCC 204
Query 177 --T-----TT-TTCGTTTTTCACTTCGGTAATGACATTAGGAGGAATGATTACGGCCGCG 228
| || |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 205 GTTGCAGATTATTCGTTTTTCACTTCGGTAATGACATTAGGAGGAATGATTACCGCCGTG 264
Query 229 TTTAGCGGGAAAATATCTGCTATCGTTGGTCGTCGACAGACAATGTGGATCTCAGATGTT 288
|| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 265 TTCAGCGGTAAAATCTCTGCTCTCGTTGGTCGTCGACAGACAATGTGGATCTCAGATGTT 324
Query 289 TGCTGCATTTTTGGTTGGCTCGCTGTAGCATATGCACATGATATTCTACTGCTTAATATT 348
||||| ||||||||||||||||||||||| | ||||||||||||| || ||||||||| |
Sbjct 325 TGCTGTATTTTTGGTTGGCTCGCTGTAGCGTTTGCACATGATATTATAATGCTTAATACT 384
Query 349 GGACGACTCTTCTTGGGGTTCGGGGTCGGTCTCATTAGTTATGTGGTTCCTGTGTATATA 408
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 385 GGACGACTCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTTCCTGTGTATATA 444
Query 409 GCAGAAATTACACCCAAAACATTTCGCGGAGGATTTTCTTATTCCAATCAGCTTCTACAA 468
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 445 GCAGAAATTACACCCAAAACATTTCGTGGAGGATTTTCTTATTCCAATCAGCTTCTACAA 504
Query 469 TGTCTTGGGATTTCACTCATGTTTTTCATTGGAAtttttttCCATTGGCGAACATTAGCT 528
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 505 TGTCTTGGGATTTCACTCATGTTCTTCACCGGAAACTTTTTCCATTGGCGAACATTAGCT 564
Query 529 CTTTTAAGTGCAATCCCAAGTGCTTCCCAAGTGATATGTTTATTTTTTATTCCTGAATCT 588
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 565 CTTTTAAGTGCAATCCCAAGTGCTTTCCAAGTGATATGTTTATTTTTTATTCCTGAATCT 624
Query 589 CCTAGATGGTTGGCGATGTATGGTCGAGATCAAGAACTTGAAGTTACTTTGAAGAGATTA 648
||||||||| ||||||||||||||| ||||||||| ||||||||| | ||||| | | ||
Sbjct 625 CCTAGATGGCTGGCGATGTATGGTCAAGATCAAGAGCTTGAAGTTTCGTTGAAAAAACTA 684
Query 649 AGGGGAGAAAATAGTGATATTCTTGAGGAAGCAGCTGAAATCAGAGAAACAGTGGAAATA 708
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 685 AGGGGAGAAAATAGTGATATTCTAAAGGAAGCTGCTGAAATCAGAGAAACAGTGGAAATA 744
Query 709 TCCAGAAAAGAGTCTCGAAGTGGAATAAGAGACTTGTTCCATATAGGAAACGCACATTCG 768
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 745 TCCAGAAAAGAGTCTCAAAGTGGAATAAGAGACTTGTTCCATATCGGAAACGCACATTCG 804
Query 769 TTAATCATTGGCTTGGGATTAATGCTTTTGCAACAATTTTGTGGGAGTGCGGCGATAAGT 828
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 805 TTAATCATTGGATTGGGTTTAATGCTCTTGCAACAATTTTGTGGGAGTGCGGCGATAAGT 864
Query 829 GCTTATGCTGCTCGTATTTTCGACAAAGCAGGTTTTCCAAGCGACATAGGAACAACCACC 888
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 865 GCTTATGCTGCTCGAATTTTCGACAAAGCCGGTTTTCCAAGCGACATAGGAACAACCATC 924
Query 889 CTCGCAGTTATTCTGATACCGCAATCTATAGTTGTCATGTTAACTGTCGACCGCTGGGGA 948
|||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 925 CTCGCAGTGATTCTGATACCGCAATCTATAGTTGTCATGTTAACCGTTGACCGATGGGGA 984
Query 949 CGCAGACCACTTCTTATGATTTCTTCTATCGGTATGTGCATATGCTCATTTTTAATTGGC 1008
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 985 CGCCGACCACTTCTTATGATTTCTTCTATCGGAATGTGCATATGCTCATTTTTTATTGGC 1044
Query 1009 CTTTCTTACTATCTTCAGAAGCATGGTGAATTTCAGAAGTTTTGTTCCGTTATGTTAATC 1068
||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1045 CTTTCATACTACCTTCAGAAGAATGGTGAATTTCAGAAGTTATGTTCCGTTATGTTAATC 1104
Query 1069 GTCGGTTTAGTGGGTTATGTCTCATCTTTTGGCATTGGTCTAGGTGGACTACCATGGGTT 1128
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 1105 GTCGGTTTAGTGGGTTATGTCTCATCCTTTGGCATTGGCCTAGGTGGATTACCATGGGTT 1164
Query 1129 ATCATGTCTGAGGTATTTCCGGTGAATGTGAAAATCACCGCCGGTAGCCTTGTAACGATG 1188
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 ATAATGTCTGAGATATTTCCGGTGAATGTGAAAATCACCGCCGGTAGCCTTGTAACGATG 1224
Query 1189 TCAAATTGGTTTTTTAATTGGATCATCATTTATAGTTTCAATTTCATGATACAGTGGAGC 1248
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1225 TCAAATTGGTTTTTTAATTGGATTATCATCTATAGTTTTAATTTCATGATACAGTGGAGC 1284
Query 1249 GCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTTTGGTGACGATCGTATTCATATGG 1308
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1285 GCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTCTGGTGACGATCGTATTCATATGG 1344
Query 1309 ACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAGAGATTCAAGCATCATTAGTCCGA 1368
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1345 ACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAGAGATTCAAACATCATTAGTCCGA 1404
Query 1369 CTTTCGTAA 1377
|||||||||
Sbjct 1405 CTTTCGTAA 1413
> AT1G08890.1 | Symbols: | Major facilitator superfamily protein
| chr1:2848348-2852270 FORWARD LENGTH=1675
Length=1675
Score = 1511 bits (818), Expect = 0.0
Identities = 1191/1368 (87%), Gaps = 38/1368 (3%)
Strand=Plus/Plus
Query 33 GAATAAGCAAGAAGAAGCTTCTTCCTTCACTTCTGGTCTTATTCTCAGCACATCCGTCGT 92
||| |||||||||| |||||||| |||||| ||||||| |||| || || |||||||
Sbjct 69 GAAGAAGCAAGAAG-CTCTTCTTCCATCACTTGTGGTCTTCTTCTTAGTACCTCCGTCGC 127
Query 93 TGTCGCTGGATCATTC-TCTTATGGCTGCGCCATGTCATATTCGTCGCCTGCTCAATCAA 151
|||| |||| || ||| | |||||||||||| ||||||||||| ||||||||||| || |
Sbjct 128 TGTCACTGGCTCTTTCGT-TTATGGCTGCGCTATGTCATATTCATCGCCTGCTCAGTCCA 186
Query 152 AAATTATGGAAGAACTGGGACTTT-C--T-----TT-TTCGTTTTTCACTTCGGTAATGA 202
|||| ||||||||||||||||||| | | || |||||||||||| ||||||||||
Sbjct 187 AAATCATGGAAGAACTGGGACTTTCCGTTGCAGATTATTCGTTTTTCACATCGGTAATGA 246
Query 203 CATTAGGAGGAATGATTACGGCCGCGTTTAGCGGGAAAATAT-CTGCTA-TCGTTGGTCG 260
|||| |||||||||||||||||||||||||| || ||||| | |||| | | |||||||
Sbjct 247 CATTGGGAGGAATGATTACGGCCGCGTTTAGTGGAAAAAT-TGCTGC-AGTTATTGGTCG 304
Query 261 TCGACAGACAATGTGGATCTCAGATGTTTGCTGCATTTTTGGTTGGCTCGCTGTAGCATA 320
||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||| |
Sbjct 305 TCGACAGACAATGTGGATCGCGGATGTTTTCTGCATCTTTGGTTGGCTCGCTGTAGCCTT 364
Query 321 TGCACATGATATTCTACTGCTT-AATATTGGACGACTCTTCTTGGGGTTCGGGGTCGGTC 379
||||||||||| | ||| || |||||||| ||| |||||||||||| ||||| ||||
Sbjct 365 TGCACATGATAAAATGCTG-TTAAATATTGGTCGAGGCTTCTTGGGGTTTGGGGTTGGTC 423
Query 380 TCATTAGTTATGTGGTTCCTGTGTATATAGCAGAAATTACACCCAAAACATTTCGCGGAG 439
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||
Sbjct 424 TCATTAGTTATGTGGTTCCTGTATATATAGCAGAAATTACGCCCAAAGCATTTCGTGGAG 483
Query 440 GATTTTCTTATTCCAATCAGCTTCTACAATGTCTTGGGATTTCACTCATGTTTTTCATTG 499
|||| |||| ||||||||| ||||||||| || ||||||| || |||||||| |||| |
Sbjct 484 GATTCTCTTTTTCCAATCAACTTCTACAAAGTTTTGGGATATCGCTCATGTTCTTCACCG 543
Query 500 G-AAtttttttCCATTGGCGAACATTAGCTCTTTTAAGTGCAATCCCAAGTGCT-TCCCA 557
| || |||||| |||||| ||||||||||||||||||||||||||||| ||| | | |||
Sbjct 544 GAAACTTTTTT-CATTGGAGAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTAT-CCA 601
Query 558 AGTGATATGTTTATTTTTTATTCCTGAATCTCCTAGATGGTTGGCGATGTATGGTCGAGA 617
| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||
Sbjct 602 AATGATATGTTTATTTTTTATTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGA 661
Query 618 TCAAGAACTTGAAGTTACTTTGAAGAGATTAAGGGGAGAAAATAGTGATATTCTTGAGGA 677
| ||| ||||| |||||||||||||| |||| ||||||||| |||||||||| || ||
Sbjct 662 ACGAGAGCTTGAGGTTACTTTGAAGAGGCTAAGAGGAGAAAATGGTGATATTCTCGAAGA 721
Query 678 AGCAGCTGAAATCAGAGAAACAGTGGAAATATCCAGAAAAGAGTCTCGAAGTGGAATAAG 737
||||||||||||||||||||||||||||| || |||| ||| |||||||||||| |||
Sbjct 722 AGCAGCTGAAATCAGAGAAACAGTGGAAACCTCTAGAAGAGAATCTCGAAGTGGACTAAA 781
Query 738 AGACTTGTTCCATATAG-GAAACGCACATTCGTTAATCATTGGCTTGGGATTAATGCTTT 796
||| |||||| |||| | |||||||||| ||||||||||||| ||||| ||||||| |
Sbjct 782 AGATTTGTTCAATAT-GAAAAACGCACATCCGTTAATCATTGGATTGGGCCTAATGCTCT 840
Query 797 TGCAACAATTTTGTGGGAGTGCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACAAAG 856
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 841 TGCAACAATTTTGTGGGAGTTCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAG 900
Query 857 CAGGTTTTCCAAGCGACATAGGAACAACCACCCTCGCAGTTATTCTGATACCGCAATCTA 916
| |||||||||||||||||||||||| ||| ||| ||||||||| || ||||||||||||
Sbjct 901 CCGGTTTTCCAAGCGACATAGGAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTA 960
Query 917 T-AGTTGTCATGTTAACTGTCGACCGCTGGGGACGCAGACCACTTCTT-ATGATTTCTTC 974
| | |||||||||| | |||||||| || |||||| |||||||| || |||| |||||
Sbjct 961 TTA-TTGTCATGTTTGCCGTCGACCGATGTGGACGCCGACCACTT-TTGATGAGCTCTTC 1018
Query 975 TATCGGTATGTGCATATGCTCATTTTTAATTGGCCTTTCTTACTATCTTCAGAAGCATGG 1034
||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1019 TATCGGTCTGTGCATATGTTCATTTTTAATTGGCCTCTCTTACTATCTTCAGAACCATGG 1078
Query 1035 TGAATTTCA-GAAGTTTTGTTCCGTTATGTTAATCGTCGGTTTAGTGGGTTATGTCTCAT 1093
||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 1079 TGATTTTCAAGA-GTTTTGTTCCCCTATCTTAATCGTCGGTTTAGTGGGTTATGTCTTAT 1137
Query 1094 CTTTTGGCATTGGTCTAGGTGGACTACCATGGGTTATCATGTCTGAGGTATTTCCGGTGA 1153
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1138 CCTTTGGCATTGGTCTAGGTGGACTACCATGGGTTATTATGTCTGAGGTGTTTCCGGTGA 1197
Query 1154 ATGTGAAAATCACCGCCGGTAGCCTTGTAAC-GATGTCAAATTGGTTTTTTAATTGGATC 1212
|||||||||| ||||||||||| |||||||| | ||||||| |||||||| | ||||||
Sbjct 1198 ATGTGAAAATTACCGCCGGTAGTCTTGTAACAG-TGTCAAACTGGTTTTTCAGTTGGATT 1256
Query 1213 ATCATTTAT-AGTTTCAATTTCATGATACAGTGGAGCGCTTCCGGAACATATTTCATATT 1271
||||||| | ||||| ||||||||||| || ||||| |||| ||||||||||||||||||
Sbjct 1257 ATCATTT-TCAGTTTTAATTTCATGATGCAATGGAGTGCTTTCGGAACATATTTCATATT 1315
Query 1272 TTCTGGAGTTTCTTTGGTGACGAT-CGTATTCATATGGACATTGGTGCCTGAGACGAAAG 1330
| ||||||||||| || || | || |||||| ||||||| |||||||||||||||||||
Sbjct 1316 TGCTGGAGTTTCTCTGATGTC-ATTCGTATTTGTATGGACTTTGGTGCCTGAGACGAAAG 1374
Query 1331 GCCGAACACTCGAAGAGATTCAAGCA-TCATTAGTCCGACTTTCGTAA 1377
|||||||||| ||||| |||||| || ||| ||| || |||||| |||
Sbjct 1375 GCCGAACACTTGAAGATATTCAA-CAATCACTAGGCCAACTTTCATAA 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5