BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470965
Length=2804
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08910.1 | Symbols: | zinc ion binding;zinc ion binding | c... 3367 0.0
AT5G41580.1 | Symbols: | RING/U-box superfamily protein | chr5... 289 1e-76
> AT1G08910.1 | Symbols: | zinc ion binding;zinc ion binding |
chr1:2856227-2861170 FORWARD LENGTH=2844
Length=2844
Score = 3367 bits (1823), Expect = 0.0
Identities = 2449/2734 (90%), Gaps = 112/2734 (4%)
Strand=Plus/Plus
Query 1 ATGGTGATTCCGGCGACTTCTAGGTTTGGGTTTCGAGCTGGATTCGACACCAAGGAGTTT 60
||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct 1 ATGGTTATTCCGGCGACTTCTAGGTTTGGGTTTCGTGCTGAATTCAACACCAAGGAGTTT 60
Query 61 CAAGCTTTCTGCATCTCTCTCGCTAATGAAATCGATGCGGCTATTGGGAAAAATGAAGTT 120
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CAAGCTTCCTGCATCTCTCTCGCTAATGAAATCGATGCGGCTATTGGGAGAAATGAAGTT 120
Query 121 CCAGTGAATATTCAAGAGCTGGCTTTAATCCTCAATCATGTGTGCCGACGTAAATGTGAT 180
|||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CCAGGGAATATTCAAGAGCTCGCTTTAATCCTCAATAATGTGTGCCGACGTAAATGTGAT 180
Query 181 GATTATCAAACGAGGGCGGTGGTAATGGCGCTGATGATCTCAGCCAAGAGTGCTTGTCAG 240
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GATTATCAAACCAGGGCGGTGGTAATGGCGCTGATGATCTCAGTCAAGAGTGCTTGTCAG 240
Query 241 CTTGGATGGTTCCCGCAGAGAGAGACTCAACAACTGTTGGCTATCATAGACTTGATGTGG 300
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CTTGGATGGTTCCCGGAGAGAGAGACTCAAGAATTGTTGGCTATCATAGACTTGATGTGG 300
Query 301 AATAGTTTCAGCTGTCCTGAAACTGTCACCCCTAGTCTAAATAGCCCCGTCAGTCTAATA 360
||| |||||||||||||||||| ||||||| || || ||||||| ||||||| |||||||
Sbjct 301 AATGGTTTCAGCTGTCCTGAAAATGTCACCTCTTGTGTAAATAGTCCCGTCACTCTAATA 360
Query 361 TCGCAGGTCATAGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGCAGGTCATTGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
Query 421 GAGGCTAAGCCAGAATCAAAGATGTTGGTGAATGACTTCCATATTTCAAAGGCGATGCCA 480
|| ||||||||||||||||||||| || |||| |||||||||||||||||| |||||||
Sbjct 421 GAAGCTAAGCCAGAATCAAAGATGATGATGAAGGACTTCCATATTTCAAAGAAGATGCCA 480
Query 481 CATTCTCACAAACAGAGGGTAGGATTATTTGTGGTCCGGACAGAGGACATAAGCAGATCT 540
||||||| |||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct 481 CATTCTCCCAAACAGAAAGTTGGATTATTTGTTGTTCGGACAGAGGACATAAGCAGATCT 540
Query 541 AATTGTATTGTACATCCACAAGAAGTCAGCTTTTTGTTAAATGGAAAGGGCGTTGACAAG 600
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 541 AATTGTATTGTACATCCACAAGGAGTCAGCTTTTTGTTGAATGGAAAGGGCATTGACAAG 600
Query 601 AGAGTTAACATCTCAATGGAGTCTGGGCCGCAGCTTCCAACTAATGTTACTGCCCTGCTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAGTTAACATCTCAATGGAGTCTGGGCCGCAGCTTCCAACTAATGTTACTGCCCTGCTA 660
Query 661 AACCCTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTCGAGGTAGTTACTTAATTGCT 720
|||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 661 AACCTTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTGGAGGTAGTTACTTGATTGCT 720
Query 721 ATTGCTTTCATGGATGTCATACCACTGCCCGACAAACCGTTGCTGAAAGATTATGTTCAT 780
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 721 ATTGCTTTCATGGATGTCATACCACTGCCCAACAAACCGTTACTGAAAGATTATGTTCAT 780
Query 781 CCTGAAGTCATTGAATCAAACTCAGATTGTGACATAATTGAGGGGCCATCAAGGATATCT 840
||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CCTGAAGTCGTTGGATCAAACTCAGATTGTGACATAATTGAGGGGCCATCGAGGATATCT 840
Query 841 CTCAGTTGTCCTATCAGCCGAACGCGTATCAAACTTCCTGTGAAGGGTCATGTCTGTAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTCAGTTGTCCTATCAGCCGAACGCGTATCAAACTTCCTGTGAAGGGTCATGTCTGTAAA 900
Query 901 CATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAATACAAGACGACCATCATGG 960
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 901 CATCTTCAGTGTTTTGATTTCTGGAATTATGTCAACATGAACACAAGACGAC-ATCATGG 959
Query 961 CGCTGCCCGCATTGCAATCAATCTATTCTAGAAGAAGTGGGACGTAATGCTGCAGATGTG 1020
||||||||||||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 960 CGCTGCCCGCATT--A-T---TCTA-----GAAGAAGTGGGACGTAATGCTGCAGATGTG 1008
Query 1021 GTTATCTCTGCTGATGGAACATGGACGGTTGAAATGGAAAACGATGATGACGTGGAACTT 1080
|||||||||||||||||||| |||| |||||| | |||||| ||||| ||||||||||||
Sbjct 1009 GTTATCTCTGCTGATGGAACCTGGATGGTTGAGACGGAAAATGATGAGGACGTGGAACTT 1068
Query 1081 GTGCCGGAAACCACTCATGACCATGGCGACCCAAATAGTTTCATAAACTTGGGGCCTACT 1140
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1069 GTGCCAGAAACCACTCATGACCATGGAGACCCAAATAGTTTCATCAACTTGGGGCCTACT 1128
Query 1141 GTTTTGAATCTTGCCAGAGATGAGAATGAAATGGAAACATCCGGTGGCACCCAAGTCGAT 1200
||| ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1129 GTTAAGAATCCTGCCAGAGATGAGAATGAAATGGAAACATCC------ACCCAAGTCGAA 1182
Query 1201 GAACAGAATCCTTGTTTATATGAGATTCAGGGTCCGTCAAATAACACACGTAGGCCTGCT 1260
||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 1183 GAACATAATCCTTGTTTATCTGAGATTCAGGGTCCGTCAAATGACACACATAGGCCTGCT 1242
Query 1261 ACAGATTACACTATGCTTAACCAGTCTCCTGCTTCAATCAACACACTGCCACA------A 1314
||||||| ||||||||||||||||||| | |||||| ||||||||| ||||| |
Sbjct 1243 TCAGATTATACTATGCTTAACCAGTCTCATACTTCAACCAACACACTACCACAGCTGCCA 1302
Query 1315 --A-CTCTGAATGCCTTTGATGGTCAACAATTCGTGAACTTACCACAAGTAGTAAACACC 1371
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1303 CGAACTTTGAATGCCTTTGATGGTCAACAATTCGTGAACTTACCACAAGTAATAAACACC 1362
Query 1372 CGAGATTCAGCAGCAAGACAAGCCTTACCTGTGACATTCTTACCAACCTCATCTCCACAA 1431
||||||||| ||||||| |||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1363 CGAGATTCACCAGCAAGCCAAGCCTTACCTATGACATTCTCACCAACCCCATCTCCACAA 1422
Query 1432 GATATGTTAGCTACTAATGCGGCAAACTTTGGCACATCAATGCCGGCTGCTCAGTCTTCT 1491
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GATATATTAGCTACTAATGCGGCAAACTTTGGCACATCAATGCCGGCTGCTCAGTCTTCT 1482
Query 1492 CAGTTTCAAGGCTCACATGTTACGTCCCTTGGAAATTGTCAAGGAAGAACTTCTGATTTG 1551
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1483 CAGTTTCAAGGCTCACATGTTACGTCCCTTGGAAATTGTGAAGGAAGAACTTCTGATTTG 1542
Query 1552 ATGGAGAGATGGAACCACATCCATGGACGTGGCAGAAATCAAACTCAATTGCCACCACCT 1611
|||| |||||||||||||||| ||||||||| |||||||||||| ||||| |
Sbjct 1543 ATGGCGAGATGGAACCACATCTATGGACGTGT------TCAAACTCAATTTCCACC---T 1593
Query 1612 GCACCTCTGTCGCAGCATCATTATGCGATGCAGAATCAGAGCCCGTCCCCTGCACAGCAA 1671
|||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1594 GCACCTCTTTCGCATCATCATTATTCAATGCAGAATCAGAGCCCGTCCCCTGCACAGCAA 1653
Query 1672 AGACCAATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTACGGAGGGAAC 1731
|||||| ||||||||||||||| ||||||||||||||| | |||||||||||||| ||||
Sbjct 1654 AGACCAGTGCCATCTTACATTGCACATCCTCAAACTTTTCATGTCAACTACGGAGAGAAC 1713
Query 1732 GCCCATCAAAGACCGATGCCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTAT 1791
|| | |||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1714 GCTGACCAAAGATGGATGCCGTCTTCCATTGCACATCCTCAAACTTTACCTGTTAACTAC 1773
Query 1792 GGAGGGAACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTTCCATT 1851
||||| || || | | | ||| | | || |||| | ||||||||||||
Sbjct 1774 GGAGG-AA-----AT-A----C---T-AAC-C--A--AA-GACCGATACCATCTTCCATT 1812
Query 1852 ACACATC-TCCAAACATTAC-T-T-AACTACAGAGGGAACGCCCATCAAAGACCGATTCC 1907
|||||| || |||| |||| | | |||||||| ||||| | | || ||| ||| ||
Sbjct 1813 GCACATCCTC-AAACTTTACCTGTCAACTACAGGGGGAATACTGACCATAGATCGACGCC 1871
Query 1908 ATCTTCCATTACAAATCTCCAAACTTTACCTGTCAGTTACGAAGGGTACGCCCACCAAAG 1967
|| |||||||||| |||||||||| |||| | | | | ||| |||| ||||| | |||||
Sbjct 1872 ATATTCCATTACACATCTCCAAACATTAC-T-TAACT-ACGGAGGGAACGCCGATCAAAG 1928
Query 1968 ACCGATGTCATCTTCCATTACACAATC-CGGAACTTCACCTGTCAAC-TACGGAGGG-AC 2024
||| ||| |||||||||||||| |||| | ||||| ||||| || | ||||||||| ||
Sbjct 1929 ACCAATGCCATCTTCCATTACA-AATCTCCAAACTTTACCTGCCA-CGTACGGAGGGTAC 1986
Query 2025 CGCTGACCAGAGACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTA 2084
|| |||| ||||||||| ||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1987 -GCCCACCAAAGACCAATGTCATCTTCCATTACACATCCCCGAACTTCACCTGTCAACTA 2045
Query 2085 CGGAGGGATCGCTGACCAAAGACACA-TGCCAAGA-CCGATG-C-CATCTTCCA---TT- 2136
|||||||| | |||||||||||| || ||||| || || | |||| ||| ||
Sbjct 2046 CGGAGGGACCCCTGACCAAAGAC-CAATGCCATCTTCC-ATTACACATCC-CCAAACTTT 2102
Query 2137 ACATATCT-C--C--A---A--A-A--CCAAATACTGAATCCTGGTGGTGCAATGGGACA 2183
|| | || | | | | | | |||||||||||||||||||||||||||||||||
Sbjct 2103 ACCTGTCAGCTACGGAGGGACCACAGACCAAATACTGAATCCTGGTGGTGCAATGGGACA 2162
Query 2184 GTTCTCATCACGAGACTTCATGAATTTGACTCCTGCTAACACTGAGAATTGGCACCCACA 2243
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2163 GTTCTCATCACGAGAGTTCATGAATTTGACTCCTGCTAACACTGAGAATTGGCGCCCACA 2222
Query 2244 AAGCCGGATGCGTGGCAGCCTAGCACCTGGTACGA-ATTATGACCATATGATCATTCGA- 2301
|||||||||||| |||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 2223 AAGCCGGATGCGAGGCAGCGTAGCACCTGGTACGGGAT-ATGACCATATGATCATTC-AT 2280
Query 2302 CCTACCCGTCCGGTTC-TACCACTAGCTCAAACACTTCCTGCGCCTCTTCCTACAGCTTA 2360
||||||||||| |||| | |||| ||||||||||| ||||||||||||| | ||| ||||
Sbjct 2281 CCTACCCGTCCAGTTCAT-CCACAAGCTCAAACACCTCCTGCGCCTCTTTCAACATCTTA 2339
Query 2361 TAATGGAGCAGATGAAATTCAAGCATTTTT-GGTACACCCAAGCTATCCCGTTAGTAATA 2419
| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 2340 TGATGGAGCAGATGAAATTCAAGCATTTATAGGG-CACCCAAGCTATCCCGTTAGTAATA 2398
Query 2420 ACGAAACGCAAGCGGGGACTAGTTCATTGCCCGTGGCAGAGGGTCTTGGGTATTCAGGGT 2479
||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2399 ACGAAACACAAGCGGGTACCAGTTCGTTGCCAGTGGCAGAGGGTCTTGGGTATTCAGGGT 2458
Query 2480 CGTTTTGGTCAATGCCTCCTGAGACATGGTGATATATGATGGCTTAGAGATTGTAGCACA 2539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2459 CGTTTTGGTCAATGCCTCCTGAGACATGGTGATATCTGATGGCTTAGAGATTGTAGCACA 2518
Query 2540 CGGTCACTAACAAAATCAGTCAGTAGTAAG-AGTA----TATA-A-CTAAGGCTTTTCTT 2592
|||||||||||| ||||||||||||||||| |||| |||| | ||||||| ||||||
Sbjct 2519 CGGTCACTAACACAATCAGTCAGTAGTAAGTAGTAACAGTATATAACTAAGGCCTTTCTT 2578
Query 2593 TTTT-GGTACTAACAGCTTTAGGCTTCCGGTACATATATGGGGC-AAGTTCTTGATGTAG 2650
|||| |||||| |||||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 2579 TTTTTGGTACTTACAGCTTTAGTCTTCGGGTACATATATGGGGCTAAGTTCTTGATGTAG 2638
Query 2651 CGTATTCCTGAGATTTACTTCATGTGAAACATTA 2684
||||||| ||||||||||||||||||||||||||
Sbjct 2639 CGTATTCGTGAGATTTACTTCATGTGAAACATTA 2672
Score = 470 bits (254), Expect = 4e-131
Identities = 375/429 (87%), Gaps = 25/429 (6%)
Strand=Plus/Plus
Query 1678 ATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTACGGAGGGAACGCCCAT 1737
||||| |||| ||||| ||||||||||||||||||||| ||||||||||| || | |
Sbjct 1729 ATGCCGTCTTCCATTGCACATCCTCAAACTTTACCTGTTAACTACGGAGGAAATACTAAC 1788
Query 1738 CAAAGACCGATGCCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTATGGAGGG 1797
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1789 CAAAGACCGATACCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTA--CAGGG 1846
Query 1798 AACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTTCCATTACACAT 1857
| || || | ||||||| ||| | ||||||| |||||||||||||
Sbjct 1847 ---G---------GA---AT--A--CTGACCATAGATCGACGCCATATTCCATTACACAT 1887
Query 1858 CTCCAAACATTACTTAACTACAGAGGGAACGCCCATCAAAGACCGATTCCATCTTCCATT 1917
||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||||
Sbjct 1888 CTCCAAACATTACTTAACTACGGAGGGAACGCCGATCAAAGACCAATGCCATCTTCCATT 1947
Query 1918 ACAAATCTCCAAACTTTACCTGTCA-GTTACGAAGGGTACGCCCACCAAAGACCGATGTC 1976
|||||||||||||||||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct 1948 ACAAATCTCCAAACTTTACCTGCCACG-TACGGAGGGTACGCCCACCAAAGACCAATGTC 2006
Query 1977 ATCTTCCATTACACAAT-CCGGAACTTCACCTGTCAACTACGGAGGGACCGCTGACCAGA 2035
|||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 2007 ATCTTCCATTACAC-ATCCCCGAACTTCACCTGTCAACTACGGAGGGACCCCTGACCAAA 2065
Query 2036 GACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTACGGAGGGATCG 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2066 GACCAATGCCATCTTCCATTACACATCCCCAAACTTTACCTGTCAGCTACGGAGGGACCA 2125
Query 2096 CTGACCAAA 2104
| |||||||
Sbjct 2126 CAGACCAAA 2134
Score = 217 bits (117), Expect = 6e-55
Identities = 295/374 (79%), Gaps = 39/374 (10%)
Strand=Plus/Plus
Query 1669 CAAAGACCAATGCCATCTTACATTGTACATCCTCAAACTTTACCTGTCAACTAC-GGAGG 1727
|||||||| || ||||||| ||||| |||||||||||||||||||||||||||| || ||
Sbjct 1789 CAAAGACCGATACCATCTTCCATTGCACATCCTCAAACTTTACCTGTCAACTACAGG-GG 1847
Query 1728 GAACGCCCATCAAAGACCGATGCCATCTTCCATTGCACATCCTC-AAACTTTACCTGTCA 1786
||| | | || ||| ||| ||||| ||||||| |||||| || |||| |||| | | |
Sbjct 1848 GAATACTGACCATAGATCGACGCCATATTCCATTACACATC-TCCAAACATTAC-T-T-A 1903
Query 1787 ACTATGGAGGGAACGCCCATCAAAGACCGATGAACGCTGACCAAAGACCAACGCCATCTT 1846
|||| |||||||||||| |||||||||| | | || ||| ||||
Sbjct 1904 ACTACGGAGGGAACGCCGATCAAAGACC-A--A----TG-CCA-------------TCTT 1942
Query 1847 CCATTACACATCTCCAAACATTACTTA--AC-TACAGAGGGAACGCCCATCAAAGACCGA 1903
|||||||| |||||||||| |||| | || ||| ||||| ||||||| |||||||| |
Sbjct 1943 CCATTACAAATCTCCAAACTTTACCTGCCACGTACGGAGGGTACGCCCACCAAAGACCAA 2002
Query 1904 T-TCCATCTTCCATTACAAATCTCCAAACTTTACCTGTCAGTTACGAAGGGTACGCCC-- 1960
| || ||||||||||||| ||| || ||||| |||||||| |||| |||| || |||
Sbjct 2003 TGTC-ATCTTCCATTACACATCCCCGAACTTCACCTGTCAACTACGGAGGG-AC-CCCTG 2059
Query 1961 ACCAAAGACCGATGTCATCTTCCATTACACAATCCGGAA-CTTCACCTGTCAACTACGGA 2019
|||||||||| ||| |||||||||||||||| ||| || ||| |||||||| |||||||
Sbjct 2060 ACCAAAGACCAATGCCATCTTCCATTACACA-TCCCCAAACTTTACCTGTCAGCTACGGA 2118
Query 2020 GGGACCGCTGACCA 2033
|||||| | |||||
Sbjct 2119 GGGACCACAGACCA 2132
> AT5G41580.1 | Symbols: | RING/U-box superfamily protein | chr5:16626337-16630783
REVERSE LENGTH=2633
Length=2633
Score = 289 bits (156), Expect = 1e-76
Identities = 489/644 (76%), Gaps = 46/644 (7%)
Strand=Plus/Plus
Query 361 TCGCAGGTCATAGAGAGGTTCTATCCATGTGTGAAGCTGGGGCATATTCTTGTTTCTTTT 420
|||||| |||| |||||||||||||||| ||| ||||| |||||| ||||||||||||||
Sbjct 575 TCGCAGATCATGGAGAGGTTCTATCCATTTGTAAAGCTTGGGCATGTTCTTGTTTCTTTT 634
Query 421 GAGGCT-AA-GCCAG-AATCAAAGATGTTGGTGAATGACTTCCATATTTCAAAGGCGATG 477
|| | | || || | || | | ||| ||| | |||| || |||| |||||| |||
Sbjct 635 GAAG-TGAAGGCTGGCTAT-ACA-ATGCTGGCGCATGATTTTTATATCTCAAAGAATATG 691
Query 478 CCACATTCTCACAAACAG-AGGGTAGGATTATTTGTGGTCCGGACAGAGGACATAAG-CA 535
|||||||| | | || || | | || |||||||| | || |||||| |||| || ||
Sbjct 692 CCACATTCACTCCAAGAGAAAATTCGG-TTATTTGTTGCCCAGACAGACAACAT-AGACA 749
Query 536 -GATCTAATTGTATTGT-ACATCCACAAGAAGTCAGCTTTTTGTTAAATGGAAAGGGCGT 593
| ||| |||||| | | |||| | |||||||||||| ||| ||||||||||||| ||
Sbjct 750 CG-TCTGCCTGTATT-TCAAATCCTCCAGAAGTCAGCTTCTTGCTAAATGGAAAGGGGGT 807
Query 594 TGACAAGAGAGTTAACATCTCAATGGAGT-CTGGGCCGCAGCTTCCAACTAATGTTACTG 652
||| |||||||| || ||| ||||||| | | ||||| || || || || ||||||||||
Sbjct 808 TGAGAAGAGAGTCAATATCGCAATGGA-TACAGGGCCTCAACTCCCTACAAATGTTACTG 866
Query 653 CCCTGCTCAACCCTGGGGCAAATCTTCTACAAGCAATAGGCTGTTTTCGAGGTAGTTACT 712
| | ||| || ||| | |||||||| |||| || || |||| ||| | ||||
Sbjct 867 CACAGCTGAAATATGGAACTAATCTTCTCCAAGTGATGGGGAATTTTAAAGGAAATTACA 926
Query 713 TAATTGC-T-ATTGCTTTCA-TGGA-T-GTCA-TACCACTGCCCGACAAACC-GTTGCTG 765
| | | | | |||||||| | ||| | || | | ||| || || ||||| ||| ||
Sbjct 927 TCA-T-CATAATTGCTTTTACGGGACTGGT-AGTGCCA---CCTGAAAAACCGGTT-CTT 979
Query 766 AAAGATTATGTTCA-TCCTGAAGTCATTGAATCAAACT-CAGATTGTGACATAATTGAGG 823
|||||||| |||| ||| | |||||||||| | || | |||||| ||||| |||||||
Sbjct 980 AAAGATTACCTTCAGTCC-GGAGTCATTGAAGC-AAGTCCAGATTCAGACATCATTGAGG 1037
Query 824 GGCCATCAAGGA-TATCTCTCAGTTGTCCTATCAGCCG-AACGCGTATCAAACTTCCTGT 881
||||||| | || ||||||||||||| ||||| || || || ||| ||||| || || ||
Sbjct 1038 GGCCATC-ACGAGTATCTCTCAGTTGCCCTATAAGTCGCAA-GCGGATCAAGCTACCAGT 1095
Query 882 GAAGGGTCATG-TCTGTAAACATCTTCAGTGTTTTGATTTCTGGAATTATGT-CAACATG 939
||||| || | | |||||||||||||||||||||||||||| || || || || |||
Sbjct 1096 CAAGGGCCA-GTTATGTAAACATCTTCAGTGTTTTGATTTCTCAAACTACGTTCA-CATA 1153
Query 940 AATACAAGACGA-CC-ATCATGGCGCTGCCCGCATTGCAATCAA 981
|||| || || || | | ||||||||||||||||||||||||
Sbjct 1154 AATATGAG--GAACCCAACCTGGCGCTGCCCGCATTGCAATCAA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139313600711
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5