BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470987
Length=3029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09060.3 | Symbols: | Zinc finger, RING-type;Transcription ... 4521 0.0
> AT1G09060.3 | Symbols: | Zinc finger, RING-type;Transcription
factor jumonji/aspartyl beta-hydroxylase | chr1:2921064-2925756
REVERSE LENGTH=3085
Length=3085
Score = 4521 bits (2448), Expect = 0.0
Identities = 2871/3067 (94%), Gaps = 61/3067 (2%)
Strand=Plus/Plus
Query 16 CTCTGCAATTTCTCTCGTGCAAAACCCTAATTTCAGGTTTTGGGTTTTCCTTCTTT--C- 72
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct 10 CTCTGCAATTTCTCTCGACCAAAACCCTAATTTCAGGTTTGGGGTTTTCCTTCTTTCACT 69
Query 73 -------AC--T----GTCAATTTTGATGAGATTTGTGATTCAGTGATTAGAATGAGTGC 119
|| | |||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 70 TGTTTTGACAATGCAGGTCAATTTTGATGAAACTTGTGATTCAGTGATTAGAATGAATGC 129
Query 120 TCATGAGCTAACTCGAT---CC----GC-----CAATGGCAATGGTGAGTCTATTCTCGG 167
| |||||| |||||||| || || ||||||||||||||||||||||| |||
Sbjct 130 TAATGAGCAAACTCGATCCGCCAATGGCATTGGCAATGGCAATGGTGAGTCTATTCCCGG 189
Query 168 GATTCCAGATGATTTACGGTGCAAGAGATCGGATGGTAAACAGTGGAGATGCACTGCAAT 227
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GATTCCAGATGACTTACGGTGCAAGAGATCGGATGGTAAACAGTGGAGATGCACTGCAAT 249
Query 228 GTCCATGGCTGATAAGACCGTGTGTGAGAAGCACTACATCCAAGCAAAGAAACGGGCAGC 287
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||
Sbjct 250 GTCCATGGCTGATAAGACTGTTTGTGAGAAGCACTACATCCAAGCAAAGAAGCGGGCGGC 309
Query 288 TAATTCGGCTTTCAGGGCGAACCAGAAGAAAGCGAAACGGAGATCATCATTAGGCGAAAC 347
|||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 310 TAATTCTGCTTTCAGGGCGAACCAGAAGAAAGCGAAAAGGCGATCATCGTTAGGCGAAAC 369
Query 348 AGATACATATTCGGAAGGGAAGATTGATGATTTTGATTTACCAGTCACCAGCATTGACCA 407
|||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 370 AGATACGTATTCGGAAGGGAAGATGGATGATTTCGAGTTACCAGTCACCAGCATTGACCA 429
Query 408 CTATAATAACGGTCTTGCCTCTGCTTCCAAGAACAATGGTAGAATAGACAAGAGACATAA 467
|||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 430 CTATAATAACGGTCTTGCCTCTGCTTCCAAGAGTAATGGTAGACTAGAGAAGAGACATAA 489
Query 468 TAAAAGCCTGATGCGGTACTCACCGGAGACACCGATGATGAGGGGTTTCTCTCCACGTGT 527
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 490 TAAAAGCCTGATGCGGTACTCGCCCGAGACACCGATGATGAGGAGTTTCTCTCCACGTGT 549
Query 528 TGCAGTGGATTTGAACGATGACTTGGGTAGAGATGTTGTAATGTTTGAAGAGGGCTACAG 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGCAGTGGATTTGAATGATGACTTGGGTAGAGATGTTGTAATGTTTGAAGAGGGCTACAG 609
Query 588 ATCGTATAGGACACCACCATCTGTTGCTGTAATGGATCC-ATCACGCAACAGATCACACC 646
||| |||||||||||||||||||||||||| |||||||| | |||| |||||||||||||
Sbjct 610 ATCTTATAGGACACCACCATCTGTTGCTGTTATGGATCCGA-CACGAAACAGATCACACC 668
Query 647 AAAGCACGAGTCCTATGGAATACTCAGCAGCAAGCACAGATGTGTCTGCAGAGTCTTTGG 706
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AAAGCACCAGTCCTATGGAATACTCAGCAGCAAGCACAGATGTGTCTGCAGAGTCTTTGG 728
Query 707 GGGAAATCTGCCATCAATGCCAGAGAAAAGATAGAGAGAGAATCATTTCTTGCCTTAAAT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 729 GGGAAATCTGCCATCAATGCCAGAGAAAAGATAGAGAGAGAATCATTTCTTGCCTCAAAT 788
Query 767 GCAATCAAAAAGCCTTCTGCGAAAATTGTATATCGACAAGGTACTCGGAGATATCACTTG 826
||||||||| |||||||||| | |||||| ||||| ||||||||||||||||||||||||
Sbjct 789 GCAATCAAAGAGCCTTCTGCCACAATTGTCTATCGGCAAGGTACTCGGAGATATCACTTG 848
Query 827 AAGAAGTTGAGAAAGTTTGCCCTGCATGTCGTGGTTTGTGTGATTGCAAATCTTGCCTGC 886
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 849 AAGAAGTCGAGAAAGTTTGCCCTGCATGTCGTGGCTTGTGTGATTGCAAATCTTGCCTGC 908
Query 887 GTTCTGATAATACAATAAAGGTTCGGATCCGGGAAAAACCCGTTTTGGAAAAGTTGCAGT 946
|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 909 GTTCAGATAATACAATAAAGGTTCGGATCCGGGAAATACCCGTTTTGGACAAGTTGCAGT 968
Query 947 ATCTTTATCGTCTATTATCAGCTGTCCTTCCAGTGATAAAGCAGATCCATCTTGAAC-A- 1004
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 969 ATCTTTATCGTCTATTATCAGCTGTCCTACCAGTCATAAAGCAGATCCATCTTGAACAAT 1028
Query 1005 --AT-----TTGAACTAGAGAAGAGGCTTCGTGGAGCTGAGATTGATCTTGTCAGGGCAA 1057
|| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1029 GTATGGAAGTTGAACTAGAGAAGAGGCTTCGTGAAGTTGAGATTGATCTTGTCAGGGCAA 1088
Query 1058 GATTGAAAGCAGATGAGCAGATGTGCTGCAACTTGTGTCGGATACCAGTTGTTGACTACT 1117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1089 GATTGAAAGCAGATGAGCAGATGTGCTGCAACGTGTGTCGGATACCAGTTGTTGACTACT 1148
Query 1118 ACCGTCATTGTCCGAACTGCTCATATGACCTTTGCCTCAGATGCTGTCAAGATCTACGGG 1177
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1149 ACCGTCACTGTCCGAACTGCTCATATGACCTTTGCCTGAGATGCTGTCAAGATCTACGGG 1208
Query 1178 AAGAGTCTTCAGTTAAGATTTGTGGGACTAACCAAAACATA-AGAGAAAGTAAAGGAGCT 1236
||||||||||||| | |||| ||||||||||||||||| || | ||| || |||||||||
Sbjct 1209 AAGAGTCTTCAGTGACGATTAGTGGGACTAACCAAAACGTACA-AGATAGAAAAGGAGCT 1267
Query 1237 CCTAAACTAAAACTAAACTTTTCATACAAGTTTCCTGAGTGGGAAGCCAACGGTGATGGG 1296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CCCAAACTAAAACTAAACTTTTCATACAAGTTTCCTGAGTGGGAAGCCAACGGTGATGGG 1327
Query 1297 AGCATCCCTTGCCCTCCTATTGAGTATGGAGGCTGCGGTTC-CTGTTCTTTGAATCTCGC 1355
||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||
Sbjct 1328 AGCATCCCTTGCCCTCCTAAGGAGTATGGAGGCTGCGGTTCAC-ATTCTTTGAATCTTGC 1386
Query 1356 TCGCATTTTCAAGATGAATTGGGTCGCAAAGCTTGTGAAAAATGCTGAGGAGATTGTTAA 1415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1387 CCGCATTTTCAAGATGAATTGGGTTGCAAAGCTTGTGAAAAATGCTGAGGAGATTGTTAG 1446
Query 1416 TGGCTGCAAATTATCTGATCTTCGGAACCCTGATATGTGTGATTCCAGTTTCTGCAAATT 1475
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1447 TGGCTGCAAATTATCTGATCTTCTGAACCCTGATATGTGTGATTCAAGATTCTGCAAATT 1506
Query 1476 TGCTGAGAGAGAAGAGAGCGGTGACAACTACGTGTACAGCCCGTCGCTTGAAACGATTAA 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 TGCTGAGAGAGAAGAGAGCGGTGACAACTACGTGTACAGCCCGTCGCTTGAAACGATTAA 1566
Query 1536 AACTGATGGAGTAGCTAA-TTTAGAGCAACAATGGGCAGAGGGTAGGCTTGTTACTGTGA 1594
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1567 AACTGATGGAGTAGCTAAGTTT-GAGCAACAATGGGCAGAGGGTCGGCTTGTTACTGTGA 1625
Query 1595 AAAGGGTACTTGACGACTCATCTTGGTCTAGATGGGATCCTGAGACTATTTGGAGGGATA 1654
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1626 AAATGGTACTTGATGACTCATCTTGCTCTAGATGGGATCCTGAGACTATTTGGAGGGATA 1685
Query 1655 TAGACGAGCTTTCAGTCGAGAAACTGAGAGAACATGATCCATTCTTGAAGGCCATTAATT 1714
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 TAGACGAGCTTTCGGACGAGAAACTGAGAGAACATGATCCATTCTTGAAGGCCATTAATT 1745
Query 1715 GCGTGGATGGTTCAGAGGTTGATGTAAGACTTGAGGAATTTACAAAAGCATATAAAGATG 1774
|| ||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1746 GCTTGGATGGTTTAGAGGTTGATGTAAGACTTGGGGAGTTTACAAGAGCATATAAAGATG 1805
Query 1775 GTAAA-AACCAAGAGACAGGTCTTCCACTACTATGGAAGTTAAAGGACTGGCC-ATGCCC 1832
| ||| |||||||||||||||||||| ||| | |||||||||||||||||||| | ||||
Sbjct 1806 G-AAAGAACCAAGAGACAGGTCTTCCGCTATTGTGGAAGTTAAAGGACTGGCCGA-GCCC 1863
Query 1833 AAGTGCTTCTGAGGAATTCATTTTCTATCAAAGACCTGAGTTTATCAGAAGTTTTCCGTT 1892
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1864 AAGTGCTTCCGAGGAGTTCATTTTCTACCAAAGACCTGAGTTTATCAGAAGTTTTCCGTT 1923
Query 1893 TCTAGAGTACATCCATCCCCGGTTAGGCCTTCTGAATGTTGCAGCCAAGTTACCTCATTA 1952
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TCTCGAGTACATTCATCCCCGGTTAGGCCTTCTGAATGTTGCAGCCAAGTTACCTCATTA 1983
Query 1953 CTCCCTCCAAAACGATGCTGGTCCAAAGATTTATGTGTCTTGTGGGACGTACCAAGAAAT 2012
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 CTCGCTCCAAAACGATTCAGGTCCAAAGATTTATGTGTCTTGTGGGACGTACCAAGAAAT 2043
Query 2013 TGGTACTGGCGATTCATTGACTAGTATTCACTACAACATGCGTGACATGGTATACCTCTT 2072
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2044 CAGTGCTGGCGATTCATTGACTGGTATTCACTACAACATGCGTGACATGGTATACCTATT 2103
Query 2073 GGTGCACACATCTGAAGAAACAACATTTGAAAAGGTGAGAGAAACGAAACCTGGTCCAGA 2132
||||||||| ||||||||||||||||| |||| ||||||| |||| ||||||| ||||||
Sbjct 2104 GGTGCACACGTCTGAAGAAACAACATTCGAAAGGGTGAGAAAAACAAAACCTGTTCCAGA 2163
Query 2133 TGAACCCGACCAGAAGATGAGCGAAAATGAGTCACTTCTTAACCCTGAGGAAAAATTAAG 2192
||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 2164 GGAACCTGACCAGAAGATGAGCGAAAATGAGTCACTTCTTAGCCCTGAGCAGAAATTAAG 2223
Query 2193 GGATGGAGAGTTACATGATCTATCACTTGATGAAGCCAATATGGAGAAGAATGAACCTGA 2252
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2224 GGACGGAGAGTTACATGATCTATCACTTGGTGAAGCCAGTATGGAGAAGAATGAACCTGA 2283
Query 2253 GTTGGCGTTGACTATGAATCCAGAGAACTTAACAGAAAACGGCCACAACATGGAATCTTA 2312
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2284 GTTGGCGTTGACTGTGAATCCAGAGAACTTAACGGAAAACGGTGACAACATGGAATCTTC 2343
Query 2313 TTGCACATCTTCATGTGCAGGAGGAGCCCAGTGGGATGTCTTTCGACGGCAAGACGTCCC 2372
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2344 TTGCACATCTTCATGTGCAGGAGGAGCCCAGTGGGATGTCTTTCGACGCCAAGACGTCCC 2403
Query 2373 AAAGCTGGCCGAGTATTTGCAGAGAACATTCCAGAAGCCTGATAATAGCCAGACTGATTT 2432
|||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2404 AAAGTTGTCCGGGTATTTGCAGAGAACATTCCAGAAGCCTGATAATATCCAGACTGATTT 2463
Query 2433 TGTGTCACGCCCGTTGTATGAAGGATTGTTCTTAAATGAACACCACAAGAGACAACTAAG 2492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 TGTGTCACGCCCGTTGTATGAAGGATTGTTCTTAAATGAACACCACAAGAGACAACTAAG 2523
Query 2493 AGACGAGTTTGGAGTTGAGCCATGGACATTTGAGCAACATCGGGGTGAGGCTATCTTCAT 2552
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2524 AGACGAGTTTGGAGTTGAGCCATGGACATTTGAGCAACATCGTGGTGAGGCTATCTTCAT 2583
Query 2553 TCCGGCTGGATGTCCGTTCCAAATCAAGAATCTTAAGTCGAATATTCAGGTGGCACTTGA 2612
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2584 TCCGGCTGGATGTCCGTTCCAAATCACTAATCTTCAGTCGAATATTCAGGTGGCACTTGA 2643
Query 2613 CTTCTTGTGCCCTGAAAGCGTTGGAGAGTCAGTAAGACTAGCTGAAGAAATCCGGTGTTT 2672
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2644 CTTCTTGTGCCCTGAAAGCGTTGGAGAGTCAGCAAGACTAGCTGAAGAAATCCGGTGTTT 2703
Query 2673 ACCAAACGACCACGAGGCAAAACTTCAGATTCTAGAGATTGGAAAGATATCGTTATACGC 2732
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2704 ACCAAACGACCACGAGGCAAAACTTCAGATTCTAGAGATTGGAAAGATATCATTATACGC 2763
Query 2733 AGCTAGCTCAGCCATTAAAGAGGTTCAGAAACTGGTCTTGGATCCAAATTTTGGAGCAGA 2792
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2764 AGCTAGCTCAGCCATTAAAGAGGTTCAGAAACTGGTCTTGGATCCAAAGTTTGGAGCAGA 2823
Query 2793 GCTTGGTTTTGAGGACTCTAACTTAACCAAAGCAGTCTCTCACAACTTAAACAAGGCAAC 2852
|||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2824 GCTTGGATTTGAAGACTCTAACTTAACCAAAGCAGTCTCTCACAACTTAGACGAGGCAAC 2883
Query 2853 CAAGCGGCCGCAGCAAATGAGTTGCACTTAA-TCAGTCAAGATTTGTATAGTAGTATAAA 2911
||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 2884 CAAGCGGCCGCAGCAAAACAGCTGCACTTAAATCAGTCAAGATTTGTATAGTAGTATAAA 2943
Query 2912 AATCATTGTTGTGACTTTAGTTTAGAC---TACTA-T--T---CAGGATTTGTAATGTAT 2962
||||||||||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 2944 AATCATTGTTGTGACTTTAGTTTAGACGACTACTACTACTATTCAGGATTTGTAATGTAT 3003
Query 2963 CTATGACTCTGTGTATATCATGCTTCATAAAGTATATTCATAACCATCATTATTCCACAT 3022
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3004 CTATGACT--GTGTATATCATGCTTCATATAGTATATTCATAACCATCATTATTCCACAT 3061
Query 3023 AATTTTT 3029
|||||||
Sbjct 3062 AATTTTT 3068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150601162886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5