BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470988
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09070.1 | Symbols: SRC2, (AT)SRC2 | soybean gene regulated ... 1735 0.0
> AT1G09070.1 | Symbols: SRC2, (AT)SRC2 | soybean gene regulated
by cold-2 | chr1:2927703-2928968 FORWARD LENGTH=1266
Length=1266
Score = 1735 bits (939), Expect = 0.0
Identities = 1120/1204 (93%), Gaps = 25/1204 (2%)
Strand=Plus/Plus
Query 24 TTTCGATCCGAGTAACCAACCATGGAGTGTAGATCATTGGATCTGACGATAATATCGGCG 83
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 48 TTTCGATCCGAGT----AACCATGGAGTGTAGATCATTGGATCTGACGATTATATCTGCG 103
Query 84 GAGGATCTCAAAGACGTTCAATTGATCGGTAAACAAGACTTGTACGCCGTCGTTTCAATC 143
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 104 GAGGATCTCAAAGACGTTCAATTGATCGGTAAACAAGACTTGTACGCCGTCGTTTCCATC 163
Query 144 AACGGTGACGCAAGGACGAAGCAGAAGACAAAGGTTGACAAAGATTGCGGCACCAAACCT 203
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 164 AACGGCGACGCTAGGACGAAGCAGAAGACAAAGGTTGATAAAGATTGCGGCACCAAACCT 223
Query 204 AAATGGAAACATCAGATGAAGCTCACCGTTGATGACGCGGCGGCGCGTGAGAATCGCCTT 263
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 224 AAATGGAAGCATCAAATGAAGCTCACCGTCGATGACGCAGCGGCGCGTGACAATCGTCTT 283
Query 264 ACTCTTGTTTTCGAGATCGTGGCGGATCGTCCCATCGCTGGTGATAAATCTGTCGGTGAG 323
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 284 ACTCTTGTTTTCGAGATCGTGGCGGATCGTCCCATCGCTGGTGATAAACCTGTCGGTGAG 343
Query 324 GTTAGCGTTCCGGTGAAGGAGCTTTTGGATCAGAACAAAGGTGACGAGGAGAAAACGGTT 383
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 344 GTTAGCGTTCCGGTGAAGGAGCTTTTGGATCAGAATAAAGGTGACGAGGAGAAAACGGTT 403
Query 384 ACTTACGCCGTGAGGTTGCCTAACGGGAAAGCTAAAGGATCTCTCAAATTCTCCTTCAAA 443
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 404 ACTTACGCCGTGAGGTTGCCTAACGGGAAGGCGAAAGGATCTCTCAAATTCTCGTTCAAA 463
Query 444 TTTGGGGAGAAA-TATACTTTTGGAGCTTCGAGTGCTCCTCACGCACCGGTTCCAGCGGC 502
|||||||| ||| ||||||| |||| ||||||||| ||||||||| ||||| || ||||
Sbjct 464 TTTGGGGA-AAAGTATACTTATGGATCTTCGAGTGGTCCTCACGCGCCGGTCCCTTCGGC 522
Query 503 TCTGGATCATAAGACCATGGATCAGCCCGTCACCGCTTACCCGCCCGGACACGTTGCACC 562
| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 523 TATGGATCATAAGACTATGGATCAGCCCGTCACCGCTTACCCGCCCGGACACGGTGCACC 582
Query 563 GTCTGCATACCCTGCTCCTCCTGCGGGTCCTTCTTCCGGATATCCACCACCAGGACATGA 622
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 583 GTCTGCATACCCTGCTCCTCCCGCGGGTCCTTCTTCCGGATATCCACCACAAGGACATGA 642
Query 623 CGATAAGTACGGTGGTGTTTACGGATACCCGCAGCAGGCTGGATATCCGCCACCTGGACC 682
||||||| ||| ||||||||| |||||||||||||||||||||||| ||| ||||| |
Sbjct 643 CGATAAGCACGATGGTGTTTATGGATACCCGCAGCAGGCTGGATAT---CCAGCTGGAAC 699
Query 683 CGGTGGATATCCGCCACCTGGTGCATACCCGCAACAGGGAGGTTACCCGGGATATCCTCC 742
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 700 CGGTGGTTATCCGCCACCTGGTGCATACCCACAACAGGGAGGTTACCCTGGATATCCGCC 759
Query 743 TCCGCAACAGGGAGGTTACCCGGGATATCCTCCACAGGGTCCATATGGTTACCCGCAACA 802
|| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 760 TCAGCAACAGGGTGGATACCCGGGTTATCCGCCACAGGGTCCATATGGTTACCCGCAACA 819
Query 803 AGGTTATCCACCACAGGGTCCATACGGTTACCCGCAACAGCAAGCTTATGGTAAACCGCA 862
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 820 AGGTTATCCACCACAGGGTCCATACGGTTACCCGCAACAGCAAGCTCATGGTAAACCGCA 879
Query 863 GAAACCGAAGAAGTACGGTAAGGCTGGAGCTGGAATGGGACTAGGGCTTGGGCTTGGAGC 922
||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 880 GAAACCGAAGAAGCATGGTAAGGCTGGAGCTGGAATGGGACTAGGACTTGGGCTTGGAGC 939
Query 923 TGGTTTATTGGGTGGGTTGCTGGTGGGTGAAGCGGTTTCTGACATCGCAGATATGGGTGA 982
||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 940 TGGTTTATTGGGTGGGTTGTTGGTTGGTGAAGCGGTTTCTGACATCGCTGATATGGGTGA 999
Query 983 TATGGGTGACATGGGTG----G--TGATTTCGATTTCTGATTGCTATGTTATCAACTTTT 1036
|||||||||||||||| | || |||||||||||||||||| ||||||||| ||||
Sbjct 1000 CATGGGTGACATGGGTGACATGGGTGGTTTCGATTTCTGATTGCTGTGTTATCAAGTTTT 1059
Query 1037 AATTTCTTAGGATAATTGCTCTA-TGTTTTTCGTTTGATGAATCATGTGAAGAACGTGAG 1095
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1060 AATTTCTTAGGATAATTGCTCTAATGTTTTTCGTTTGATGAATCATGTGAAGAACGTGAG 1119
Query 1096 AGATCAAGTCTTATCTTGTGTTTATGTCTCTGGTTACTTCTTTTTCTTCTAATGAATGTA 1155
||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1120 AGATCAAGTTTTATCTTGTGTTTATGTCTCCGGTTACTTATTTT-CTTCTAATGAATGTA 1178
Query 1156 TTGAACATTATGATGCTATTTCCAATCACTG-CTGTTGAATAGAATGCAATGAAACATAG 1214
| ||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1179 ---A-CATTATGAT---ATTTCCAATCTCTGGCTGTTGAATAGAATGCAATGAAACATTG 1231
Query 1215 GAAA 1218
||||
Sbjct 1232 GAAA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5