BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470991
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09090.2 | Symbols: ATRBOHB, RBOHB | respiratory burst oxida... 1125 0.0
AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory... 78.7 2e-13
> AT1G09090.2 | Symbols: ATRBOHB, RBOHB | respiratory burst oxidase
homolog B | chr1:2932739-2936586 FORWARD LENGTH=2627
Length=2627
Score = 1125 bits (609), Expect = 0.0
Identities = 669/698 (96%), Gaps = 4/698 (1%)
Strand=Plus/Plus
Query 1607 TCAAAGTGGGCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACCAGGTTTCCGAG 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1876 TCAAAGTGGGCTCTTCATAGCTGACATAGGTCAAGCCAACAATATAACCAGGTTTCCGAG 1935
Query 1667 GCTGTTAATCGATGGTCCATATGGTGCACCAGCACAAGATTACCGGCACTACGATGTATT 1726
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1936 GCTGTTAATCGATGGTCCATATGGTGCACCCGCACAAGATTACCGGAACTACGATGTATT 1995
Query 1727 GCTTCTGGTAGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCT 1786
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 GCTTCTAGTAGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCT 2055
Query 1787 TAACAACATCAAGAACCAGAAATCGATCGAACAAGGCACTAACCAACACATAAAAAACTA 1846
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 2056 TAACAACATCAAGAACCAGAATTCCATCGAACGAGGCACTAACCAACACATAAAAAACTA 2115
Query 1847 TGTTGCCACAAAACGAGCTTATTTCTATTGGGTAACAAGAGAGCAAGGATCATTGGAATG 1906
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2116 TGTTGCCACAAAACGAGCTTATTTTTATTGGGTAACAAGAGAGCAAGGATCATTGGAATG 2175
Query 1907 GTTCAGTGAGGTCATGAACGAGGTAGCTGAGTACGATAGCGAGGGGATGATTGAACTACA 1966
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2176 GTTCAGTGAGGTCATGAACGAGGTAGCTGAGTATGATAGTGAGGGGATGATTGAACTACA 2235
Query 1967 TAATTACTGTACGAGCGTGTATGAGGAAGGAGACGCGAGGTCAGCACTAATCACAATGTT 2026
||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2236 TAATTACTGCACTAGCGTGTATGAGGAAGGAGATGCGAGGTCAGCACTAATCACCATGTT 2295
Query 2027 GCAGTCATTGCACCATGCCAAGAGCGGCATTGACATCGTATCGGGCACGCGGGTCCGAAC 2086
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2296 GCAGTCATTGCACCACGCCAAGAGCGGCATTGACATCGTATCGGGCACTCGGGTCCGAAC 2355
Query 2087 CCATTTCGCTCGTCCCGATTGGCGTAGCGTCTTCAAGCACGTTGCTGTCAACCACGTCAA 2146
|||||||||||| ||| |||||||||| |||||||||||||| || ||||||||||||||
Sbjct 2356 CCATTTCGCTCGACCCAATTGGCGTAGTGTCTTCAAGCACGTCGCAGTCAACCACGTCAA 2415
Query 2147 TCAACGAGTTGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACT 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2416 TCAACGAGTTGGGGTTTTCTACTGTGGTAATACATGCATCATAGGAGAGTTAAAGAGACT 2475
Query 2207 AGCTCAAGATTTCTCTAGGAAAACTACGACCAAGTTTGAGTTCCACAAGGAGAATTTTTA 2266
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2476 GGCTCAAGATTTCTCTAGGAAAACTACGACCAAGTTTGAGTTCCACAAGGAAAATTTCTA 2535
Query 2267 GTTTCAATTCTATTAAATCATCCATCAGACCATTATTA 2304
||||| |||||||| ||||||||||||||| ||||
Sbjct 2536 GTTTCGATTCTATT----CATCCATCAGACCATCATTA 2569
Score = 905 bits (490), Expect = 0.0
Identities = 590/638 (92%), Gaps = 7/638 (1%)
Strand=Plus/Plus
Query 918 ACC-TGGCCAAAGGCAGTG--GAGACCTTGAAATTCAACATGGCTCTCATCCTCTTGCCC 974
||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1001 ACCGTGGCCAAAGGCAGTGCAGAGACCTTGAAATTCAACATGGCTCTCATTCTCTTGCCC 1060
Query 975 GTTTGTAGGAACACTATAACTTGGCTAAGGACCAAGTCAAAGCTTATTGGGTCCGTTGTT 1034
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1061 GTTTGTAGGAACACTATCACTTGGCTAAGGACCAAGTCCAAGCTTATTGGGTCTGTTGTT 1120
Query 1035 CCATTTGATGACAACATCAATTTCCACAAGGTTATTGCGTTTGGGATCGCAATTGGAACT 1094
|||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||| |
Sbjct 1121 CCATTTGATGACAATATCAATTTCCACAAGGTTGTTGCATTTGGGATCGCGGTTGGAA-T 1179
Query 1095 -GGCTTACACGCCATATCTCACCTGGCATGCGATTTCCCGCGTTTGTTGCATGCAAAAAA 1153
||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1180 AGGCTTGCACGCTATATCTCACCTGGCATGTGATTTCCCGCGTTTGCTGCATGCAAAAAA 1239
Query 1154 TGTAGAATATGAGCCAGT-AAAAAGGTTTTTCGGAGACGAGAGGCCGGACAATTACGGAT 1212
|||||| | ||||||| | ||||| ||||||||||||||||||||| || ||||| ||||
Sbjct 1240 TGTAGAGTTTGAGCCAATGAAAAA-GTTTTTCGGAGACGAGAGGCCTGAAAATTATGGAT 1298
Query 1213 GGTTCATGAAAGGGACAGATGGTTGGACCGGAGTCACCATGGTGGTTCTAATGGTAGTGG 1272
||||||||||||||||||| || |||||||| || |||||||||||||| ||| ||||||
Sbjct 1299 GGTTCATGAAAGGGACAGACGGGTGGACCGGTGTTACCATGGTGGTTCTTATGTTAGTGG 1358
Query 1273 CCTACGTCTTGGCGCAGTCTTGGTTCAGACGCAACCGGGCAAACCTACCAAAATCGTTGA 1332
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1359 CCTACGTCTTGGCGCAGTCGTGGTTCAGACGAAACCGGGCAAACCTACCAAAATCGTTGA 1418
Query 1333 AACGATTGACGGGTTTCAACGCGTTTTGGTACTCGCACCATTTGTTTGTCATCGTTTATG 1392
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1419 AACGATTGACTGGTTTCAACGCATTTTGGTACTCACACCATTTGTTTGTCATCGTTTATG 1478
Query 1393 TGCTTCTAATCGTGCATGGCTATTTTATCTATCTCTCCAAGGAATGGTACCACAAGACGA 1452
| ||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1479 TTCTTCTCATCGTGCATGGCTATTTTGTTTATCTCTCAAAGGAATGGTACCACAAGACGA 1538
Query 1453 CGTGGATGTATCTGGCTGTTTCCGTTCTACTATATGCATCTGAACGATTGATTCGTGCAT 1512
|||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct 1539 CGTGGATGTATCTGGCAGTTCCCGTACTACTATATGCATTTGAACGATTGATTCGTGCAT 1598
Query 1513 TTAGACCAGGTGCCAAGGCTGTCAAGATTTTAAAGGTG 1550
|||||||||||||||||||||||||| |||| ||||||
Sbjct 1599 TTAGACCAGGTGCCAAGGCTGTCAAGGTTTTGAAGGTG 1636
Score = 682 bits (369), Expect = 0.0
Identities = 405/423 (96%), Gaps = 0/423 (0%)
Strand=Plus/Plus
Query 498 GTGGACAAAAATTTGGACGGACGTATTACTGGAGATGAGGTTAAGGAGATAATTGCTTTA 557
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 551 GTGGACAAAAATTTGGACGGACGTATTACAGGAGATGAGGTTAAGGAGATAATTGCTTTA 610
Query 558 AGTGCTTCGGCGAACAAACTATCAAAGATTAAGGAAAATGTAGATGAATATGCTGCCTTG 617
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 611 AGTGCTTCGGCTAACAAGCTATCAAAGATTAAAGAAAATGTAGATGAATATGCTGCCTTG 670
Query 618 ATCATGGAAGAACTCGATCGCAACAACCTCGGATATATTGAGCTACACAACTTGGAAACA 677
|||||||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 671 ATCATGGAAGAACTAGATCGCGACAACCTCGGATATATTGAGTTACATAACTTGGAAACA 730
Query 678 TTGCTTCTCCAAGTTCCAAGCCAATCAAACAACAGTCCATCTTCCGCGAACAAACGTGCA 737
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 731 TTGCTTCTCCAAGTTCCTAGCCAATCAAATAACAGTCCATCTTCCGCGAACAAACGTGCA 790
Query 738 CTCAACAAGATGTTGAGTCAGAAGCTGATACCAACGAAAGATCGGAACCCGGTGAAAAGA 797
||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||
Sbjct 791 CTCAACAAGATGTTGAGCCAGAAGCTCATACCAACAAAAGATCGAAACCCGGTGAAAAGA 850
Query 798 TTTGCTAGGAATATTTCATACTACTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACA 857
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 851 TTTGCTATGAATATATCATACTTCTTCTTGGAAAATTGGAAAAGGATTTGGGTGTTAACA 910
Query 858 TTGTGGATATCCATTTGCATCGCTCTCTTCACTTGGAAATTTCTCCAGTATAAACGCAAA 917
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 911 TTGTGGATATCCATTTGCATCACTCTCTTCACTTGGAAATTTCTCCAGTATAAACGCAAA 970
Query 918 ACC 920
|||
Sbjct 971 ACC 973
Score = 303 bits (164), Expect = 4e-81
Identities = 213/237 (90%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 GAATGCAAGAGGAAGGAATGGAATCTTGGTCAGAAGAAGAGA-AAATCAAGATTTCCCGA 59
|||||| ||||||| ||||||||||| |||||||| |||| ||| |||||||||||||
Sbjct 3 GAATGCGGGAGGAAGAAATGGAATCTTCGTCAGAAGGTGAGACAAA-CAAGATTTCCCGA 61
Query 60 TGCAAAGCCACTGGTCCAGAAAATTCTGAAGAGGACGACGTCGAGATCACACTCGAAGTG 119
||||||||||||||| |||| ||| |||| |||||| |||||||||||||||||||||||
Sbjct 62 TGCAAAGCCACTGGTTCAGACAATCCTGATGAGGACTACGTCGAGATCACACTCGAAGTG 121
Query 120 CGAGACGAAAGCATCGGCACAACGAAGGCCAAGGCGACACTTCGGTCTGTTCTTTCCGGG 179
|||||||||| |||| ||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 122 CGAGACGAAACCATCAACACAATGAAGGCCAAGGCGACACTTCGTTCGGTTCTTTCCGGG 181
Query 180 AGACTAAAAACGATGGTTAAGACGTTGTCGTTTGCTTCACGCCGGCTCGACCGTAGT 236
|| || ||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 182 AGGCTGAAAACGATGGTTAAGTCGCTATCGTTTGCTTCACGCCGGCTCGACCGTAGT 238
Score = 187 bits (101), Expect = 4e-46
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 237 TTGAGGTTCATTGCCAAAACCGACGCCGTTGGCAGAGGCTGGGATGAGGTTGCAACGAGG 296
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 272 TTGAGGTTCATTGCCAAAAACGACGCCGTTGGTAGAGGCTGGGATGAGGTTGCAATGAGG 331
Query 297 TTCGATCAGTTGGCCGTTGAAGGGAAGCTCCCTAAATCCAAATTTGGACATTGCATAGG 355
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 332 TTTGATAAGTTGGCCGTTGAAGGGAAACTCCCTAAATCCAAATTTGGACATTGCATAGG 390
Score = 104 bits (56), Expect = 4e-21
Identities = 60/62 (97%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 422 CTTTTTGAGACGTTGGTCCGAAGGAGAGGGACTTCGTCATCGTCAATCACCAAAACTGAA 481
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 422 CTTTTTGAGGCGTTGGTCCGAAGGAGAGGGACTACGTCATCGTCAATCACCAAAACTGAA 481
Query 482 TT 483
||
Sbjct 482 TT 483
> AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory
burst oxidase protein D | chr5:20757284-20762431 REVERSE
LENGTH=3174
Length=3174
Score = 78.7 bits (42), Expect = 2e-13
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 1677 GATGGTCCATATGGTGCACCAGCACAAGATTACCGGCACTACGATGTA-TTGCTTCTGGT 1735
||||||||||||||||||||||||||||| ||| | | ||||| || || || || ||
Sbjct 2360 GATGGTCCATATGGTGCACCAGCACAAGACTACAAGAAGTACGAGGTGGTT-CTACTAGT 2418
Query 1736 AGGTCTAGGGATCGGAGCGACGCCATTAATCAGCATAATCAGGGACGTCCTTAACAACAT 1795
||||| ||||| ||||| || ||| | ||||| || ||| ||| | |||| |||||
Sbjct 2419 TGGTCTCGGGATTGGAGCCACACCAATGATCAGTATCGTCAAAGACATTGTTAATAACAT 2478
Query 1796 CAAG 1799
||||
Sbjct 2479 CAAG 2482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114356841510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5