BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470995
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE... 1498 0.0
> AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942564-2945961 REVERSE LENGTH=1273
Length=1273
Score = 1498 bits (811), Expect = 0.0
Identities = 1041/1147 (91%), Gaps = 35/1147 (3%)
Strand=Plus/Plus
Query 99 ATGAGTAGCCGATGGAATCGTACGATCTACGTTGGGAATTTGCCTGGAGATATTCGCATG 158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 144 ATGAGTAGCCGATGGAATCGTACGATCTACGTTGGGAATTTGCCTGGAGATATTCGCAAG 203
Query 159 CGTGAGGTTGAAGATCTCTTCTACAAGTACGGACCAATTGTGGACATTGATTTGAAGATT 218
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 204 TGTGAGGTTGAAGATCTCTTCTACAAGTATGGACCAATTGTGGACATTGATTTGAAGATT 263
Query 219 CCACCGAGACCTCCTGGTTATGCCTTTGTCGAGTTTGAAGATCCTCGTGATGCAGACGAT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CCACCGAGACCTCCTGGTTATGCCTTTGTCGAGTTTGAAGATCCTCGTGATGCAGACGAT 323
Query 279 GCAATTTATGGACGTGATGGTTATGATTTTGATGGGTGTCGTCTACGGGTTGAGATTGCA 338
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 324 GCAATTTATGGACGTGATGGTTATGATTTTGATGGGTGTCGACTTCGGGTTGAGATTGCA 383
Query 339 CATGGTGGTCGTAGAGGTTCATCATCAGTCGATAGGTACAGCAGCAGCTACACTGGGAGC 398
||||||||||||||| |||| ||||||| |||||||||||||||||||||| || ||||
Sbjct 384 CATGGTGGTCGTAGATTTTCACCATCAGTTGATAGGTACAGCAGCAGCTACAGTGCGAGC 443
Query 399 CGTGCACCTTCTAGGCGCTCTGCCTATCGCGTGCTTGTGACGGGATTACCACCTTCTGCT 458
||||||||||| || ||||||| ||| |||||||||||||| |||||||| |||||||||
Sbjct 444 CGTGCACCTTCAAGACGCTCTGACTACCGCGTGCTTGTGACCGGATTACCGCCTTCTGCT 503
Query 459 TCGTGGCAGGACCTTAAGGATCACATGCGCAAAGCTGGAGATGTCTGCTTCTCTGAAGTT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCGTGGCAGGACCTTAAGGATCACATGCGCAAAGCTGGAGATGTCTGCTTCTCTGAAGTT 563
Query 519 TTCCGTGACCGTGGAGGCATGTCTGGGGTTGTGGATTATAGCAACTATGATGATATGAAG 578
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TTCCCTGACCGTAAAGGCATGTCTGGGGTTGTGGATTATAGCAACTATGATGATATGAAG 623
Query 579 TACGCGATAAGGAAACTTGATGACACTGAGTTTCGAAATGCTTTCTCTAGAGCTTATATA 638
||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 624 TACGCAATAAGGAAACTTGATGCCACTGAATTTCGAAATGCTTTCTCTAGTGCTTATATA 683
Query 639 CGGGTGAGAGAATATGAGTCGAGGAGTGTGAGTC-ACAGCCCATATGATTCTAGAAGCTA 697
|||||||| ||||||||||||||||||||||||| | |||||| ||||||||| ||||||
Sbjct 684 CGGGTGAGGGAATATGAGTCGAGGAGTGTGAGTCGA-AGCCCAGATGATTCTAAAAGCTA 742
Query 698 TAGAAGCAGGAGTCGGAGCCGTAGTCGAAGCTGTAGCTATAGTAGCAGGAGCAGGAGTGT 757
|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 743 TAGAAGCAGGAGTCGGAGCCGTGGTCCAAGCTGTAGCTATAGTAGCAAGAGCAGGAGTGT 802
Query 758 GTCACCTGCTAGATCTGTTTCCCCGCGTTCACGGTCCCTTAGTCGTGCTCGTTCGCCATA 817
||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||| |||
Sbjct 803 GTCACCTGCTAGATCCATTTCCCCGCGTTCACGGCCCCTTAGTCGTTCTCGCTCGCTATA 862
Query 818 CAGCTCTGTCTCAAGGTCC-AGATCAAGATCAAGATCAAGATCAA-ATTCTCCAGTTTCA 875
||||||||||||||||||| | ||||||||||| ||||||||||| || | || | |
Sbjct 863 CAGCTCTGTCTCAAGGTCCCA-ATCAAGATCAAAATCAAGATCAAGAT-CA--AGAT-C- 916
Query 876 CCTGTAAGTCTAAAAGGTTAA---GTGAGATCTGATTGAAAATGAAAACTGGTGACTGGC 932
| || ||| | | || | |||| ||||| ||||||||||||||||| ||||||
Sbjct 917 ---G-AATTCTCCA-GTTTCACCTGTGATATCTGGTTGAAAATGAAAACTGGCCACTGGC 971
Query 933 TGTACCTGAATCGTCTCATGCTTCTCAGAG-TCCACTGCTAATAGAATCTGATACGGATT 991
|||||| ||||||||||| ||||||||| | ||||||||||||||||| |||| | ||||
Sbjct 972 TGTACCCGAATCGTCTCAAGCTTCTCAG-GCTCCACTGCTAATAGAATTTGATTCCGATT 1030
Query 992 TGGGATTATCCTGCTGGTCTTCTTGTATGGGACGACCAATATGTCTTTCTAGTTTTAGTT 1051
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TGGGATTATTATACTGGTCTTCTTGTATGGGACGACCAATATGTCTTTCTAGTTTTAGTT 1090
Query 1052 TTTGAACATGGAATTGGTCTGTTATTGTGTCATTAAGAAAGCCAGAAACTTTATCTTGGC 1111
| |||| |||||||||||||||||||||||||||| |||||| |||||| | ||| |||
Sbjct 1091 GT-GAACCTGGAATTGGTCTGTTATTGTGTCATTAA-AAAGCCGGAAACTCTGTCTCGGC 1148
Query 1112 TGCATATTAAAGTTCATCAGACGAC-GTGGTGCGTGTGTTGTGAGGTTTTTCCATACAAA 1170
|||||| ||||||||||||||| | ||| || ||||| |||||||||||||||||| |
Sbjct 1149 TGCATAATAAAGTTCATCAGAC-ATTGTGTTGGGTGTG--GTGAGGTTTTTCCATACATA 1205
Query 1171 TAT-TTTACATTACAACTACTGGAAGTGTGGTGTCTTTTATGATCCTCTTAAACTAAATT 1229
|| ||||||||||||||||||| ||| |||||||||| |||||||||||| |
Sbjct 1206 TACATTTACATTACAACTACTGG---TGT-----CTTTTATGATTATCTTAAACTAAACT 1257
Query 1230 TGCAGTG 1236
|||||||
Sbjct 1258 TGCAGTG 1264
Score = 143 bits (77), Expect = 4e-33
Identities = 92/99 (93%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1 AACGGTAGTTGTCTTCTTTCCAGAACAATCTAACGCTTTCTCGAACATCTTCTTCT-CTT 59
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AACGGTGGTTGTCTCCTTTCCAGAACAATCTAACGCTTTCTCGAACATCTTCTTCTTCTT 60
Query 60 CTTTTTCAAAATTTATTTTTCCAGTCATCAATTTCTTCT 98
|||| || ||||| ||||||||||| |||||||||||||
Sbjct 61 CTTTCTCGAAATT-ATTTTTCCAGTAATCAATTTCTTCT 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5