BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470998
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09155.1 | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B1... 1271 0.0
> AT1G09155.1 | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B15
| chr1:2949676-2950989 REVERSE LENGTH=1172
Length=1172
Score = 1271 bits (688), Expect = 0.0
Identities = 851/927 (92%), Gaps = 22/927 (2%)
Strand=Plus/Plus
Query 74 ACTTCAATTGTGAAGAAGGATGATGTTACCAGAAGCATGCGTGGCGAATATCCTCTC-TT 132
|||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 129 ACTTTAATTCTGAAGAAGGATGATGTTACCAGAAGCATGCGTGGCGACTATCCTCTCATT 188
Query 133 TCACAACTCCAGCTGACACATTCTCGTCGGCGGCTGTCTCATCAGTTTTCCGAGTCGCCG 192
| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 189 T-ACAACTCCGGCTGACACAATCTCGTCGGCGGCTGTCTCATCAGTTTTCCGAGTCGCCG 247
Query 193 GAGACTCTGACTTTGTCTGGGAGAAGTTTTTACCGACCGATTACTGCCACGTCATCTCTA 252
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GAGACTCTGACTTTGTGTGGGAGAAGTTTTTACCGACCGATTACTGCCACGTCATCTCTA 307
Query 253 GATCGAGTGGTCCTCACCGGAGTTTCTCTTCCAAAAAGGAGCTTTATCGATATCTCTGTG 312
|||||| || ||||||||| | ||||||||| ||||||||||||||||||| ||||||||
Sbjct 308 GATCGACTGATCCTCACCGAATTTTCTCTTCTAAAAAGGAGCTTTATCGATGTCTCTGTG 367
Query 313 AATCAATTCTCATCGATAATGGCAGAAAGATTTTCAAGATCGAGAAGCTTTCAGGGAAAA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AATCAATTCTCATCGATAATGGCAGAAAGATTTTCAAGATCGAGAAGCTTTCAGGGAAAA 427
Query 373 TATCGTATATTTTGTCAG-CAAGAGATCTTTCTATAACTTGGAGCGACCAGCGACATTAC 431
|||||||||||||||| | ||||||||||||| |||||||||||||| || ||||||||
Sbjct 428 TATCGTATATTTTGTC-GTCAAGAGATCTTTCCATAACTTGGAGCGATCAAAGACATTAC 486
Query 432 TGGTCTTGGAGCCCTCGATCAGATTCAAGGTTTTCGGAAGGAGTCGAACTTATTATGACG 491
|||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 487 TGGTCTTGGAGCCCACGATCAGATTCAAGGTTTTCCGAAGGAGTCCAACTTATAATGACA 546
Query 492 GATTGGTTAGAAATCATCGGAAAAATCCAAACCGGAGTTTTATCACCGAACACAAACTAT 551
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 547 GATTGGTTAGAAATCATCGGAAAAATCCAAACCGGAGCTTTATCGCCGAACACAAACTAC 606
Query 552 GGAGCTTATTTGATTATGAAAGTGACGTCACGTGCCTATGGACTAGACCTAGTTCCGGCA 611
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 607 GGAGCTTATCTGATTATGAAAGTAACGTCACGTGCCTATGGACTAGACCTAGTTCCGGCA 666
Query 612 GAGACTTCGATAAAAGTGGGGAATTGTGAAAAGAAAATAAGGTCAACTTATCTAAGTTGC 671
||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 667 GAGACATCGATAAAAGTGGGAAATGGTGAAAAGAAAATAAAGTCAACTTATCTAAGTTGC 726
Query 672 TTGGATAACAAGAAACAACAAATGGAACG-GATGTTTTACGGACAGCGAGAACAGAGAAT 730
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||
Sbjct 727 TTGGATAACAAGAAACAACAAATGGAACGTG-TGTTTTACGGACAAAGAGAACAGAGGAT 785
Query 731 GGCGATGGACAAGGTTGTTGGAAGTAATCGGAGGGAGCCAGAGTTGAGAGAGGATGGGTG 790
||||| | | ||||||| ||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 786 GGCGACGCATGAGGTTGTCCGAAGTCATCGGAGGGAGCCAGAGGTGAGAGACGATGGGTG 845
Query 791 GATGGAGATAGAGCTCGGAGAGTTCGAGACAGGATCACGAGAAGGTGACGACGACGACAA 850
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 846 GATGGAGATAGAGCTGGGAGAGTTCGAGACAGGATCAGGAGAAGGTGATGACGAC-A-A- 902
Query 851 GGAAGTTGTTATGAGTCTGAGC-GAAGTTAAAGGTTACCAATTGAAGGGTGGGATTGCGA 909
||| |||||||||||||||| | |||||||||||||| |||||||||||||| ||||| |
Sbjct 903 GGAGGTTGTTATGAGTCTGA-CTGAAGTTAAAGGTTATCAATTGAAGGGTGGAATTGCCA 961
Query 910 TTGATGGGATTGAAGTAAGGCCTAAACTAAACCCCCCAAAAGTGAGGG-----ACTAACT 964
||||||||||||||||||||||||||| ||| ||||||||||| || ||||
Sbjct 962 TTGATGGGATTGAAGTAAGGCCTAAAC----CCCT--AAAAGTGAGGGCCGGGACCAACT 1015
Query 965 TACAGAGGAGTGCCAAATTTTGTGTTT 991
| ||| ||||||||||||||||||||
Sbjct 1016 AAAAGATGAGTGCCAAATTTTGTGTTT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5