BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470999
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09157.1 | Symbols: | Protein of unknown function (DUF679) ... 497 4e-140
AT5G39650.1 | Symbols: | Protein of unknown function (DUF679) ... 436 8e-122
> AT1G09157.1 | Symbols: | Protein of unknown function (DUF679)
| chr1:2951665-2952396 REVERSE LENGTH=732
Length=732
Score = 497 bits (269), Expect = 4e-140
Identities = 309/328 (94%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 231 TTTCAAAGCCTCCGATGGGAAAATCTACTACGGTTTCGTGACTCCACGTGGACTCGCGGT 290
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 369 TTTCAAAGCCTCCGATGGGAAAATTTACTACGGTTTTGTGACTCCACGTGGACTCGCGGT 428
Query 291 GTTCATGAAACCGCCTTCGCCGGAGTTTGGAGGGGGAGATGTGATTG-AGGAGGCGGAGA 349
|||||||||||| || ||||||| ||||||||| ||||||||||||| | ||| |||||
Sbjct 429 GTTCATGAAACCACCCTCGCCGGGGTTTGGAGGCGGAGATGTGATTGCA-GAGAAGGAGA 487
Query 350 TTCCGGTGACGGATGAGAGGTATAAGTTGCGGGTTAATGACTTTGTGCATGCAGTGATGA 409
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 488 TTCCGGTGACGGATGAGAGGTATAAGTTGAGGGTTAATGACTTTGTGCATTCAGTGATGA 547
Query 410 GTGTTTTGGTTTTTATGGCGATTGCGTTTTCGGATCGGAGAGTCACCGGGTGTTTGTTTC 469
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 548 GTGTTTTGGTTTTTATGGCGATCGCGTTTTCGGATCGGAGAGTCACAGGGTGTTTGTTTC 607
Query 470 CAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGATCGGAATTG 529
|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 608 CAGGAAAAGAGAAGGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGGTCGGAATTG 667
Query 530 TTTGCAGTGCTTTGTTTCTGTTGttttt 557
||||||||||||||||||| | ||||||
Sbjct 668 TTTGCAGTGCTTTGTTTCT-T-GTTTTT 693
Score = 237 bits (128), Expect = 9e-62
Identities = 174/195 (89%), Gaps = 7/195 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTT--ACG-CGACTCCGCCGCAAAAA 57
||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||
Sbjct 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGACGACAACGACGCAAAAT 60
Query 58 CCATCACCACCACT-GTCTAGGTCGCCAAAACCTGT-CCTACTCTCTTCACTGCTTACAC 115
|| |||||| || | |||| ||||||| |||||||| ||| ||||||||||||| || |
Sbjct 61 CCGTCACCAACA-TCGTCTCGGTCGCCCAAACCTGTCCCT-CTCTCTTCACTGCCTATGC 118
Query 116 TTCCGGCAGGAGCCGCCGCAGGAGGAGGAAAATGTGGAAAACGTCGCATGGTGGCGAAAG 175
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 119 TTCCGGCAGGAGCCGCCGCGGGAGGAGGAAAAGGTAGAAAACGTCGCATGGTGGCGAAAG 178
Query 176 GAGTTCAAAAAACGG 190
|||||||||||||||
Sbjct 179 GAGTTCAAAAAACGG 193
Score = 69.4 bits (37), Expect = 4e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 191 ACTCTCTTGATGTTCGAAATGGTTCTTCCGTCAATCTACC 230
|||||||||||||||||||||||||||||| |||||||||
Sbjct 235 ACTCTCTTGATGTTCGAAATGGTTCTTCCGACAATCTACC 274
> AT5G39650.1 | Symbols: | Protein of unknown function (DUF679)
| chr5:15875199-15876116 FORWARD LENGTH=918
Length=918
Score = 436 bits (236), Expect = 8e-122
Identities = 299/329 (91%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 231 TTTCAAAGCCTCCGATGGGAAAATCTACTACGGTTTCGTGACTCCACGTGGACTCGCGGT 290
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 438 TTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCGCGGT 497
Query 291 GTTCATGAAACCGCCTTCGCCGGAGTTTGGAGGGGGAGATGTGATTGAGGAGGCGGAGAT 350
||||||||||||||| | || |||||||| || |||||||| || | |||||| |||||
Sbjct 498 GTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAGAGAT 557
Query 351 TCCGGTGACGGATGAGAGGTATAAGTTG-CGGGTTAATGACTTTGTGCATGCAGTGATGA 409
||||||||| ||||| |||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 558 TCCGGTGACTGATGATAGGTATAAGTTGAC-GGTTAATGACTTTGTTCATGCAGTGATGA 616
Query 410 GTGTTTTGGTTTTTATGGCGATTGCGTTTTCGGATCGGAGAGTCACCGGG-TGTTTGTTT 468
| |||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 617 GCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCA-CGGGATGTTTGTTT 675
Query 469 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGATCGGAATT 528
|||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 676 CCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAATT 735
Query 529 GTTTGCAGTGCTTTGTTTCTGTTGttttt 557
||||| |||||||||||||| | ||||||
Sbjct 736 GTTTGTAGTGCTTTGTTTCT-T-GTTTTT 762
Score = 219 bits (118), Expect = 3e-56
Identities = 173/198 (87%), Gaps = 10/198 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTT--AC-GCGACTCCGCCGCAAAAA 57
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 67 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTCCGCCGCAAAAA 126
Query 58 CCATCACCA-C-C-AC-TGTCTAGGTCGCCAAAACCTGTCCTACTCTCTTCACTGC-TTA 112
||||||||| | | || | ||| | || |||||||| ||| || |||||||| ||| ||
Sbjct 127 CCATCACCATCACCACCT-TCTCGTTCACCAAAACCCGTCTTAATCTCTTCATTGCCTTC 185
Query 113 CACTTCCGGCAGGAGCCGCCGCAGGAGGAGGAAAATGTGGAAAACGTCGCATGGTGGCGA 172
| || ||| ||||||||||||| |||||||||| | || ||||||||||||||||||||
Sbjct 186 C-CTCCCGTCAGGAGCCGCCGCTGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTGGCGC 244
Query 173 AAGGAGTTCAAAAAACGG 190
||||||||||||||||||
Sbjct 245 AAGGAGTTCAAAAAACGG 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5