BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471002
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09160.2 | Symbols: | Protein phosphatase 2C family protein... 2822 0.0
> AT1G09160.2 | Symbols: | Protein phosphatase 2C family protein
| chr1:2952771-2955689 REVERSE LENGTH=1868
Length=1868
Score = 2822 bits (1528), Expect = 0.0
Identities = 1756/1863 (94%), Gaps = 27/1863 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCCCAATCTGAGAAAATCCACAAAACTCACTCTGCAACCTTCGTTTCTCTTCTTC 60
||||||||||||||||| ||| || |||||||||||| ||||||||||||||| |
Sbjct 1 TTTCTTCCCAATCTGAG-AAA---AC---TCTCACTCTGCAA-CTTCGTTTCTCTTCTCC 52
Query 61 TTTCTAAAACCTCTCACGCGGTTTCAGACTTCCGTTCGATTACCGACGACGGCTCGGAAA 120
||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 53 TTTCTTAAACCTCTCACGCGGTTTCAGACTTCCGTTCGCTTACCGAAGACGGCTCGGAAA 112
Query 121 TTCTCTCC-GGAGAAGCAGCGAGGTCCTTAGCATTATCTACGAGTCATCTTCTCTGCTAG 179
|||| ||| | |||| |||||| | |||||||||||||||| ||||||||| ||||||||
Sbjct 113 TTCTTTCCTGAAGAATCAGCGACGACCTTAGCATTATCTACAAGTCATCTTTTCTGCTAG 172
Query 180 ATCTGTTTTGTATGCTACTCGCGATTTCATTTTGGTGATTTGTTCCAGCCAATGCTGAAG 239
||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 173 ATCTGTTGTGTATACTACTCGCGATTTCATTTT-G-AATTTGTTCCAGCCAATGCTGAAG 230
Query 240 GCTAGACTAAAATGAGCGTGTCAAAAGCATCGAGGACTAC-ACATTCGCTTGTTCCTCTT 298
||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 231 GCTAGACTAAAATGAGCGTGTCAAAAGCATCGAGGAC-GCAACATTCGCTCGTTCCTCTT 289
Query 299 GCTACCCTGATTGGTGGGGAGCTGAGGAGCGAGAAAGTAGAGAAGCCTTTTGTCAAGTAT 358
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GCGACCCTGATTGGTAGGGAGCTGAGGAGCGAGAAAGTAGAGAAGCCTTTTGTCAAGTAT 349
Query 359 GGTCAAGCTGCTCTCGCTAAGAAAGGAGAGGACTACTTTTTGATCAAAACTGACTGTGAG 418
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GGTCAAGCAGCTCTCGCTAAGAAAGGAGAGGACTACTTTTTGATCAAAACTGACTGTGAA 409
Query 419 AGGGTACCTGGTGATCCATCATCAGCTTTTTCAGTTTTCGGGATATTTGATGGACACAAT 478
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 410 AGGGTACCTGGTGATCCATCATCGGCTTTTTCAGTTTTCGGGATATTTGACGGACACAAT 469
Query 479 GGTAATTCAGCTGCCATATATACTAAGGAACATCTTCTAGAGAACGTGGTGAGTGCAATT 538
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 470 GGTAATTCAGCTGCCATATATACTAAGGAACATCTTCTGGAAAACGTGGTGAGTGCAATT 529
Query 539 CCTCATGGCGCTAGCAGGGAAGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCAGGC 598
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 530 CCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGC 589
Query 599 TTTGTCAAAACTGACATAGAATTTCAGCAGAAAGGGGAAACTTCAGGAACAACCGTGACT 658
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTTGTGAAAACTGACATTGAATTTCAGCAGAAAGGGGAAACTTCAGGAACAACCGTGACT 649
Query 659 TTTGTTATAATTGATGGTTGGACTATCACTGTTGCTTCTGTTGGTGACTCACGCTGCATA 718
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 650 TTTGTTATAATTGATGGTTGGACTATTACTGTTGCTTCTGTTGGTGACTCGCGCTGCATA 709
Query 719 TTAGACACCCAAGGTGGTGTGGTTTCTCTGCTGACTGTTGATCACAGGCTAGAAGAGAAT 778
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 710 TTGGACACCCAAGGTGGTGTGGTTTCTCTACTGACTGTTGATCACAGGCTAGAAGAGAAT 769
Query 779 GTTGAAGAGAGAGAACGCATAACTGCCAGTGGAGGTGAGGTCGGAAGGCTCAATGTATTT 838
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 770 GTTGAAGAAAGAGAACGCATAACTGCTAGTGGAGGTGAGGTCGGAAGACTCAATGTATTT 829
Query 839 GGTGGCAATGAGGTCGGCCCACTACGATGCTGGCCTGGTGGTTTGTGTCTTTCGAGGTCC 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 830 GGTGGCAATGAGGTCGGCCCACTACGATGCTGGCCTGGTGGTTTATGTCTTTCGAGGTCC 889
Query 899 ATTGGTGATACGGATGTGGGAGAATTCATTGTCCCTATACCACACGTTAAGCAAGTGAAA 958
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 890 ATTGGTGATACGGATGTGGGAGAATTTATTGTCCCTATACCACACGTTAAGCAAGTGAAA 949
Query 959 CTTCCAGATGCTGGAGGGAGACTCATCATAGCTTCAGATGGTATATGGGATATACTGTCT 1018
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTTCCTGATGCTGGAGGGAGACTCATCATAGCTTCAGATGGTATATGGGATATACTGTCT 1009
Query 1019 TCTGATATGGCTGCCAAAGCTTGCCGTGGTTTATCTGCCGAGCTTGCTGCTAAACTTGTT 1078
|||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1010 TCTGATGTGGCTGCCAAAGCTTGTCGTGGTTTATCTGCCGATCTTGCTGCTAAACTTGTT 1069
Query 1079 GTTAAGGAAGCATTGAGAACTAAAGGGTTGAAGGATGATACGACTTGTGTAGTTGTTGAC 1138
||||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1070 GTTAAGGAAGCATTGCGAACAAAAGGGTTGAAAGATGATACGACTTGTGTAGTCGTTGAC 1129
Query 1139 ATAGTTCCATCTGGTCATCTTTCCTTGGCTCCAGCACCCATGAAGAAGCAGAATGCATTC 1198
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1130 ATAGTTCCATCTGGTCATCTTTCCTTGGCTCCAGCACCCATGAAGAAACAGAACCCATTT 1189
Query 1199 ACCTCATTCCTTTCTAGGAAAAACCATAGGGATACCAACAACAAAAATGGCAACAAGCTT 1258
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1190 ACCTCATTTCTTTCAAGGAAAAACCATATGGATACCAACAACAAAAATGGCAACAAGCTT 1249
Query 1259 TCTGCTGTGGGAGTTGTAGAAGAATTGTTTGAAGAAGGTTCTGCTGTACTTGCAGATAGA 1318
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1250 TCTGCTGTTGGAGTTGTAGAAGAATTGTTTGAAGAAGGTTCTGCTGTGCTTGCAGATAGA 1309
Query 1319 TTGGGAAAGGATCCTCCCTCACATACGGAAACTGGGCTCTTAAAATGTGCTGTATGCCAA 1378
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTGGGAAAGGATCTTCTCTCAAATACGGAAACTGGGCTCTTAAAATGTGCTGTATGCCAA 1369
Query 1379 ACCGATGAATTTCCGGGTGAAGATTTATCAAGCAATGGGGGTTCCATCATTTCCTCAGCA 1438
| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ATAGATGAATCTCCGAGTGAAGATTTATCAAGCAATGGGGGTTCCATCATTTCCTCAGCA 1429
Query 1439 TCTAAACGATGGGAAGGTCCCTTTCTGTGCACAATATGCAAGAAAAAGAAAGACGCCATG 1498
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1430 TCTAAACGATGGGAAGGTCCCTTCCTATGCACAATATGCAAGAAAAAGAAAGACGCCATG 1489
Query 1499 GAAGGAAAAAGACCAAGCAAAGGTTCAGTGACTACTTGAAGCCACTTGTGTGCAG-GAAA 1557
|||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 1490 GAAGGAAAAAGACCAAGCAAAGGTTCAGTGACTACTTGAAGCCACTTGCGTGC-GTGAAA 1548
Query 1558 AAGAAATCAGAA--TCAGGCATTGATTGGAAAGTAGTGGTAATAGTAGAAGTGTATGCAA 1615
|| || ||| || || || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1549 AA-AA-TCATAAAATCCGGTATTGATTGGAAAGTAGTAGTAATAGTAGAAGTTTATGCAA 1606
Query 1616 ATGTTTGTagagagagagagagagagagagaga-A-TAGATCCAATTCTTATCCATTGTT 1673
|||||||||||||||||||||||||| | | || | ||||||||||||||||||||||||
Sbjct 1607 ATGTTTGTAGAGAGAGAGAGAGAGAGTGTGTGACAATAGATCCAATTCTTATCCATTGTT 1666
Query 1674 TAAGATTTCCCTGGATTGCATTCTTGGCTTTATGCTGACCATTTACCTTCGTAGATGTGT 1733
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1667 TAAGATTTCCCTGGATTGCGTTCTTGGCATTATGCTGACCATTTACCTTCGTAGATGTGT 1726
Query 1734 TTTTGTTTGGGAAATTGCTGATATTCTAACAAGAGTTTCCAAGTTGTAAGTAGAATTCAT 1793
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1727 TTTTGTTTGGGAAATTGCTGATATACTAACAAGAGTTTCCAAGTTGTAAGTAGAATTCAT 1786
Query 1794 ATTTTTGATTATTGTCA---A-TCCTATTGCACCCATTCATTGAAGTTTATTTCGGTTTA 1849
||||| | ||||||||| | ||||||||||| ||||||||||||||| ||||||||||
Sbjct 1787 ATTTT-G-TTATTGTCACTCAATCCTATTGCACTCATTCATTGAAGTTTGTTTCGGTTTA 1844
Query 1850 TAT 1852
|||
Sbjct 1845 TAT 1847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5