BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471005
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09176.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 235 2e-61
> AT1G09176.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:2964152-2964604
FORWARD LENGTH=453
Length=453
Score = 235 bits (127), Expect = 2e-61
Identities = 355/454 (78%), Gaps = 59/454 (13%)
Strand=Plus/Plus
Query 1 ATGGCTCACGTATTACTACTGTTACTTGCGATTCATGCGCATATCCAAGCCGTTGTTTCA 60
|||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||
Sbjct 28 ATGGTTCACGTATTACTATTGTTACTAGCGATTCATGCGCATATCCAAGCCGTTGCTTCA 87
Query 61 ATCACA---------G-C-C-G---TCCATCTGAAACCTAACTCCATCTCAGG-AACTAC 104
|||||| | | | | |||||||||||||||| ||||||| ||| ||| |
Sbjct 88 ATCACAAATACTTCTGTCTCAGCCGTCCATCTGAAACCTAATTCCATCTTAGGTAACAA- 146
Query 105 AACGTGTTGTGAGATAGATAACCCATTTTGGC-GACGGGAGCTTCGAAGCAGCGGTGGTA 163
|||||||||| |||||||| ||| |||||| | ||||||||||||||||||||||||
Sbjct 147 AACGTGTTGTAAGATAGATTTCCCGGTTTGGCAG-CGGGAGCTTCGAAGCAGCGGTGGTG 205
Query 164 GCGGCGGAGGAGGTCATGGTGGTGG---A------AGCAGTGGTCGAGGCGGAAACAGCG 214
|||| |||||||||| ||||||||| | ||||||||||||||||| |||||||
Sbjct 206 GCGGTGGAGGAGGTCGTGGTGGTGGTGGAGGTGGCAGCAGTGGTCGAGGCGGCAACAGCG 265
Query 215 GTAAAGGCGGTAGTAGAG-ATGGAGGAGGTAGCGGTGGC-GCTGGGA--A-TGGAAGATC 269
||||||| || ||||||| || | |||||| ||| | ||| | | ||||| ||
Sbjct 266 GTAAAGGGGGCAGTAGAGGATCTTCTAA-TAGCGGCGGCCG-TGGCAGCAGTGGAA-ATG 322
Query 270 TTCTAATAGTGGCGGCCATCGCAGCAGTGGTAGTAGCAATGGTGGCCATTCTGTAGGAAG 329
| ||| | | ||| | | | | ||||| | || | |||||||||||||
Sbjct 323 GT--AAT-G-G-CGGT-A-C-C-G--GTGGT-G--GC--------C-ATTCTGTAGGAAG 359
Query 330 CGGCGGTGACTGCTTGAAACACCGTGGTCTCACCGGTTCTACATTATTTCTCGTCTTTGT 389
||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 360 CGGGGGTGACTGCTTCAAACACCGTGGTCTCACCGGAACTACAATATTTCTCGTCTTCGT 419
Query 390 AACCTCTTTGATTATTTACACGTTGAAACAGTAA 423
|| | |||||||| |||| ||||||||||||||
Sbjct 420 AAGCACTTTGATTCTTTATGCGTTGAAACAGTAA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5