BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471006
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09180.1 | Symbols: ATSAR1, ATSARA1A, SARA1A | secretion-ass... 928 0.0
AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B |... 665 0.0
> AT1G09180.1 | Symbols: ATSAR1, ATSARA1A, SARA1A | secretion-associated
RAS super family 1 | chr1:2965023-2965972 FORWARD
LENGTH=737
Length=737
Score = 928 bits (502), Expect = 0.0
Identities = 583/622 (94%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 41 TGTGTGGATTCTAATTAGATCTGAGGAAGACGACGTCATGTTTTTGTTTGATTGGTTCTA 100
|||||||||| |||| ||| | ||||||| |||||||||||||| || |||||||||||
Sbjct 88 TGTGTGGATTATAATCCGATATCAGGAAGAAGACGTCATGTTTTTATTCGATTGGTTCTA 147
Query 101 TGGAATATTTGCGTCGTTAGGTTTGTGGC-AGAAAGAAGCGAAGATCTTGTTTCTAGGCC 159
|||||| || || |||||||| |||| || | ||||| ||||| ||||||||| ||||||
Sbjct 148 TGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGAGGCGAAAATCTTGTTTTTAGGCC 206
Query 160 TCGACAATGCCGGAAAAACTACTTTACTTCACATGCTCAAAGACGAGAGATTAGTTCAGC 219
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 207 TCGACAATGCCGGAAAAACTACTTTGCTTCACATGCTCAAAGATGAGAGATTAGTTCAGC 266
Query 220 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAAGTTCAAGG 279
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 267 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAACTTCAAGG 326
Query 280 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTCGGGTTTGGAAAGATTACTATGCCAAGG 339
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 327 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGGTTTGGAAAGACTGCTATGCCAAGG 386
Query 340 TTGATGCTGTTGTCTACCTTGTGGATGCTTACGACAGGGAGAGATTTGTGGAGTCGAAAA 399
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 387 TTGATGCTGTTGTCTACCTAGTGGATGCTTACGACAGGGATAGATTTGTGGAGTCGAAAA 446
Query 400 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 506
Query 460 GCAACAAGATTGATATTCCTTATGCATCCTCAGAAGATGAGCTCAGGTATCACTTGGGTC 519
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 507 GCAACAAGATTGATATACCTTATGCATCCTCAGAAGATGAGCTTAGGTATTACTTAGGTC 566
Query 520 TCACCAATTTCACTACCGGTAAAGGCA-ATGTCAGTCTTGAAAACTCTGGTGTTCGTCCC 578
||||||||||||||||||||||||||| | || | ||||||| |||||||||||||||||
Sbjct 567 TCACCAATTTCACTACCGGTAAAGGCATA-GTGAATCTTGAAGACTCTGGTGTTCGTCCC 625
Query 579 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGTGAAGGGTTC-AAATG 637
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 626 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGCGA-GGGTTTTAAATG 684
Query 638 GCTATCTCAGTATATCAAGTAG 659
||||||||||||||||||||||
Sbjct 685 GCTATCTCAGTATATCAAGTAG 706
> AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B
| secretion-associated RAS 1B | chr1:21086555-21088549 REVERSE
LENGTH=943
Length=943
Score = 665 bits (360), Expect = 0.0
Identities = 511/584 (88%), Gaps = 10/584 (2%)
Strand=Plus/Plus
Query 77 CATGTTTTTGTTTGATTGGTTCTATGGAATATTTGCGTCGTTAGGTTTGTGGCAGAAAGA 136
|||||| ||||| ||||||||||| ||||| || || |||||||| || ||||| |||||
Sbjct 71 CATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCTTCGTTAGGGTTATGGCAAAAAGA 130
Query 137 AGCGAAGATCTTGTTTCTAGGCCTCGACAATGCCGGAAAAACTACTTTACTTCACATGCT 196
||| |||||||||||||| || ||||| ||||| || |||||||| ||||||||||||||
Sbjct 131 AGCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCT 190
Query 197 CAAAGACGAGAGATTAGTTCAGCACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAG 256
|||||||||||||||||||||||| ||||| || || ||||| |||||||| ||||||||
Sbjct 191 CAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAG 250
Query 257 CATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGTGGCCATCAGATTGCTCGTCGGGT 316
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 251 CATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGT 310
Query 317 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTACGACAG 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 311 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAA 370
Query 377 GGAGAGATTTGTGGAGTCGAAAAGAGAGCTAGACGCTCTTTTATCAGATGAAGCC-TTAG 435
|| ||||||| ||||| ||||||||||| || |||||| | || ||||||||| || |
Sbjct 371 AGAAAGATTTGCAGAGTCAAAAAGAGAGCTTGATGCTCTTCTCTCGGATGAAGCCCTT-G 429
Query 436 CAAATGTTCCC-TGTCTTATTCTTGGCAACAAGATTGATATTCCTTATGCATCCTCAGAA 494
||| ||| ||| | ||| |||||||| |||||||||||||| ||||||||| | || |||
Sbjct 430 CAACTGT-CCCGTTTCTGATTCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAA 488
Query 495 GATGAGCTCAGGTATCACTTGGGTCTCACCAATTTCACTACCGGTAAAGGCAATGTCA-G 553
|| || || |||||||||||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 489 GACGAACTGAGGTATCACTTGGGTCTCACTAACTTCACCACCGGTAAGGGCAAAGTGACG 548
Query 554 TCTTGAAAACTCTGGTGTTCGTCCC-CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAA 612
|| | | ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||
Sbjct 549 -CTCGGAGACTCTGGTGTTCG-CCCACTTGAGGTCTTCATGTGCAGCATTGTCCGTAAAA 606
Query 613 TGGGTTATGGTGAAGGG-TTCAAATGGCTATCTCAGTATATCAA 655
|||||||||| || ||| ||||||||||| |||||||| |||||
Sbjct 607 TGGGTTATGGCGA-GGGATTCAAATGGCTCTCTCAGTACATCAA 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5