BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471009
Length=464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:29... 645 0.0
AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:32... 379 1e-104
> AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:2971593-2972199
REVERSE LENGTH=607
Length=607
Score = 645 bits (349), Expect = 0.0
Identities = 405/432 (94%), Gaps = 3/432 (1%)
Strand=Plus/Plus
Query 34 TTCTATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACCGGAGGCAAA-GCTCCAAGGA 92
||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 65 TTC-ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGA 122
Query 93 AGCAATTGGCGACAAAAGCGGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAAC 152
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 123 AGCAGCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGC 182
Query 153 CTCACAGATTCAGACCCGGAACCGTAGCTCTAAGAGAAATCAGGAAGTACCAGAAGAGCA 212
| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 183 CACACAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCA 242
Query 213 CTGAGCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATCGCTCAGGATT 272
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 243 CTGAGCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGTCAGAGAGATCGCTCAGGACT 302
Query 273 TCAAGACCGATCTCCGTTTCCAGAGCAGTGCCGTCGCCGCCCTCCAGGAAGCTGCTGAAG 332
|||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 303 TCAAAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAG 362
Query 333 CATACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCTATTCATGCCAAGAGAGTCA 392
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 363 CTTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCA 422
Query 393 CAATCATGCCCAAGGACATCCAGCTCGCAAGAAGAATCAGAGGAGAAAGAGCTTAGATCT 452
| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 423 CGATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTTAGATCT 482
Query 453 AAGTATTCTGGT 464
||||||||||||
Sbjct 483 AAGTATTCTGGT 494
> AT5G10390.1 | Symbols: | Histone superfamily protein | chr5:3268847-3269550
REVERSE LENGTH=704
Length=704
Score = 379 bits (205), Expect = 1e-104
Identities = 343/411 (83%), Gaps = 4/411 (1%)
Strand=Plus/Plus
Query 38 ATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACCGGAGGCAAAGCTCCAAGGAAGCAA 97
||||||||||| ||||| || || |||||||| || ||||||||||| ||||| ||||||
Sbjct 76 ATGGCTCGTACTAAGCAAACCGCGAGGAAATCCACAGGAGGCAAAGCACCAAGAAAGCAA 135
Query 98 TTGGCGACAAAAGCGGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAACCTCAC 157
| || || || ||||| |||||||||||||| |||||||||||||||||||| || ||
Sbjct 136 CTCGCAACCAAGGCGGCAAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCAT 195
Query 158 AGATTCAGACCCGGAACCGTAG-CTCTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 216
|||||| | || ||||| || | || | ||||| ||||||||||| ||||||||||||||
Sbjct 196 AGATTCCGTCCAGGAACTGTTGCCT-TGAGAGAGATCAGGAAGTATCAGAAGAGCACTGA 254
Query 217 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATCGCTCAGGATTTCAA 276
||||||||||||||| |||||||||||| | || || | ||||| ||||||||||||||
Sbjct 255 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTCGTGAGATAGCTCAGGATTTCAA 314
Query 277 GACCGATCTCCG-TTTCCAGAGCAGTGCCGTCGCCGCCCTCCAGGAAGCTGCTGAAGCAT 335
||| ||||| | |||| |||||||||| || || || | || || |||||||| || |
Sbjct 315 GACGGATCTGAGGTTTC-AGAGCAGTGCTGTTGCTGCTTTACAAGAGGCTGCTGAGGCTT 373
Query 336 ACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCTATTCATGCCAAGAGAGTCACAA 395
|||| || || | || |||||||| ||||| ||||| ||||| || ||||| ||||| |
Sbjct 374 ACCTTGTTGGTTTGTTTGAAGACACTAATCTTTGCGCCATTCACGCTAAGAGGGTCACCA 433
Query 396 TCATGCCCAAGGACATCCAGCTCGCAAGAAGAATCAGAGGAGAAAGAGCTT 446
||||||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 434 TCATGCCTAAGGATATCCAGCTCGCGAGGAGAATCAGAGGAGAAAGAGCTT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22052790533
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5