BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471010
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:... 1930 0.0
AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a |... 1280 0.0
> AT1G09210.1 | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2972842-2976750
REVERSE LENGTH=1745
Length=1745
Score = 1930 bits (1045), Expect = 0.0
Identities = 1198/1271 (94%), Gaps = 13/1271 (1%)
Strand=Plus/Plus
Query 1 ATGGCG-AAATTAATCACTAGCCTCGTCTCTCTGATTCTTATCGGTCTCG-T-CG-TCGC 56
|||||| |||| | || |||||||||||||||| |||||||||||||| | | || ||||
Sbjct 96 ATGGCGAAAATGATTC-CTAGCCTCGTCTCTCTAATTCTTATCGGTCTTGTTGCGATCGC 154
Query 57 CTCCGCGGCAGTTATCTTCGAAGAGCGCTTCGATGATGGATGGGA-AAGCAGATGGGTTA 115
|||||| |||||||| ||||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 155 CTCCGCCGCAGTTATTTTCGAGGAGCGCTTTGATGATGGCTGGGAGAA-CAGATGGGTTA 213
Query 116 AATCTGAGTGGAAGAAGGATGATAACACTGCTGGGGAGTGGAAACACACTGCTGGAAATT 175
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 214 AATCTGAGTGGAAGAAGGATGATAACACTGCTGGGGAGTGGAAGCACACTGCGGGAAATT 273
Query 176 GGTCTGGTGACTCTAACGATAAAGGTATCCAGACTAGTGAGGACTACAGATTCTACGCCA 235
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 274 GGTCTGGTGACGCTAACGATAAAGGTATCCAGACCAGTGAAGACTACAGATTCTACGCCA 333
Query 236 TTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAAACCTTAGTCTTCCAGTTCTCAG 295
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 334 TTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAGACCTTAGTCTTCCAATTCTCAG 393
Query 296 TCAAGCACGAGCAAAAGCTTGACTGTGGTGGTGGCTACATGAAGCTGCTCAGTGGTGATG 355
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 394 TCAAGCACGAGCAAAAGCTTGACTGCGGTGGTGGCTACATGAAGCTACTAAGTGGTGATG 453
Query 356 TTGACCAGAAGAAATTTGGTGGAGACACCCCATACAGTATCATGTTTGGTCCCGATATCT 415
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 454 TTGACCAAAAGAAATTTGGTGGAGACACACCATACAGTATCATGTTTGGTCCTGATATCT 513
Query 416 GTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTACCTACAATGAAGCCAACCACCTGA 475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 514 GTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTACCTATAATGAAGCCAACCACCTGA 573
Query 476 TCAAGAAGGATGTTCCATGTGAAACTGATCAGCTTACCCATGTGTACACCTTCATCCTCC 535
||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||
Sbjct 574 TCAAGAAAGATGTTCCATGTGAAACTGACCAGCTCACCCATGTGTACACATTTATCCTCC 633
Query 536 GCCCAGATGCAACTTACAGCATTCTCATCGACAATGTTGAGAAGCAAACGGGTAGCCTTT 595
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 634 GCCCAGATGCTACTTACAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTT 693
Query 596 ACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCTG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCTG 753
Query 656 AGGATTGGGACGACCAAGAATACATTTCTGACCCTGAAGACAAGAAACCTGACGGATACG 715
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 754 AGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAAACCTGACGGTTACG 813
Query 716 ATGATATCCCAAAGGAGATCCCAGACACCGACTCAAAGAAGCCTGAGGACTGGGATGATG 775
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATGATATCCCTAAGGAGATCCCAGACACCGACTCAAAGAAGCCTGAGGACTGGGATGATG 873
Query 776 AAGAAGATGGTGAGTGGACTGCCCCGACCATCCCCAACCCTGAGTACATGGGTGAATGGA 835
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 874 AAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGA 933
Query 836 AGCCTAAGCAAATCAAGAACCCCAACTACAAGGGCAAGTGGAAGGCACCAATGATTGACA 895
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 934 AGCCTAAGCAAATCAAGAACCCCAACTACAAGGGCAAGTGGGAGGCTCCATTGATTGACA 993
Query 896 ACCCTGACTTCAAGGATGACCCAGAGCTCTATGTCTTCCCCAAGCTGAAGTATGTTGGAC 955
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 994 ACCCTGACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGAC 1053
Query 956 TCGAATTGTGGCAGGTGAAATCAGGATCGCTGTTTGATAATGTCTTGATCTGCGATGACC 1015
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 1054 TCGAATTGTGGCAGGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACC 1113
Query 1016 CAGACTACGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGAAAAAG 1075
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1114 CAGACTATGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGAGAAAG 1173
Query 1076 CAGCTTTCGATGAGGCGGAGAAGAAGAATGAGGAAGAGGAATCCAAGGACGCACCTGCAG 1135
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 CAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGGAATCCAAGGACGCACCTGCGG 1233
Query 1136 ATTCTGATGCTGAAGAGGAACCAGAGGATGATGATGGAG-A--TGAATCAGATTCTGAAT 1192
| |||||||||||||| ||||||||||||||||| |||| | ||| || ||||||||||
Sbjct 1234 AATCTGATGCTGAAGACGAACCAGAGGATGATGAAGGAGGAGATGATTCCGATTCTGAAT 1293
Query 1193 CTAAGGCTGAGGAGAGCAAATCAGAAGTTAGCGAGGAAAC-TGCTGAGAAAGACGCTACC 1251
||||||| ||||||| |||||||| || |||||||||||| | ||||||||||||| |||
Sbjct 1294 CTAAGGCCGAGGAGACCAAATCAGTAGATAGCGAGGAAACCT-CTGAGAAAGACGCCACC 1352
Query 1252 GCTCATGTATG 1262
||||||| |||
Sbjct 1353 GCTCATG-ATG 1362
Score = 244 bits (132), Expect = 1e-63
Identities = 186/210 (89%), Gaps = 11/210 (5%)
Strand=Plus/Plus
Query 1317 GTTCAAGATTTGAAGACCAAAGTTTTCAGAGTCTTTATTGTTTTATCCTTT-CTTTTGAA 1375
||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 1378 GTTGAAGATTTGAAGACCAAAGTTTTCAGTCTCTTTATTGTTTTATCGTTTTCTTTTGAA 1437
Query 1376 GTATTTTAGCATCTAGTAGTTTGTCGGAGAGATAGAATCAAGTTTTAGCAAAATTAAAAT 1435
||||||||||||||||| || |||||||| ||||| ||||||||||||||| |||||
Sbjct 1438 GTATTTTAGCATCTAGT--TT-GTCGGAGA--TAGAAACAAGTTTTAGCAAAACTAAAAG 1492
Query 1436 GGGGATACAATGACTGTCGGATGCTCCTTTTAGACTTGAA----C-ATGAAGAAGTTTTG 1490
|||||||||||| ||||| ||||||| |||||||||| || | ||||||||||||||
Sbjct 1493 GGGGATACAATGTCTGTCAGATGCTCATTTTAGACTTTAAAAAACCATGAAGAAGTTTTG 1552
Query 1491 CAGTTGCATCTCTTTCTCTAGTCTTGTTTC 1520
||||||| |||||||||||| |||||||||
Sbjct 1553 CAGTTGCTTCTCTTTCTCTACTCTTGTTTC 1582
> AT1G56340.1 | Symbols: CRT1, CRT1a, AtCRT1a | calreticulin 1a
| chr1:21089844-21092660 REVERSE LENGTH=1523
Length=1523
Score = 1280 bits (693), Expect = 0.0
Identities = 1051/1223 (86%), Gaps = 27/1223 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAAATTAATCACTAGCCTCGTCTCTCTGATTCTTATCGGTCTCGT--CG-TCGCC 57
||||||||| ||| | ||| || ||||| |||||||| ||| |||||| | ||| |
Sbjct 31 ATGGCGAAACTAAACCCTAAATTCATCTCTTTGATTCTTTTCGCTCTCGTGGTGATCGTC 90
Query 58 TCCGCGGCAGTTATCTTCGAAGAGCGCTTCGATGATGGATGGGA-AAGCAGATGGGTTAA 116
|| || | |||||||||||| ||| ||||| ||||||||||| ||| |||||||| ||
Sbjct 91 TCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGATGGATGGGAGAAG-AGATGGGTAAA 149
Query 117 ATCTGAGTGGAAGAAGGATGATAACACTGCTGGGGAGTGGAAACACACTGCTGGAAATTG 176
|||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 150 ATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTG 209
Query 177 GTCTGGTGACT-CTAACGATAAAGGTATCCAGACTAGTGAGGACTACAGATTCTACGCCA 235
||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 210 GTCTGGTGA-TGCTAACGATAAAGGTATCCAAACTAGCGAGGACTACAGATTCTACGCTA 268
Query 236 TTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAAACCTTAGTCTTCCAGTTCTCAG 295
| |||||||| |||||||| || || |||||||| || |||||||||||||| ||||| |
Sbjct 269 TATCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAGACCTTAGTCTTCCAATTCTCTG 328
Query 296 TCAAGCACGAGCAAAAGCTTGACTGTGGTGGTGGCTACATGAAGCTGCTCAGTGGTGATG 355
||||||| ||||| |||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct 329 TCAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTAAGTGATGATG 388
Query 356 TTGACCAGAAGAAATTTGGTGGAGACACCCCATACAGTATCATGTTTGGTCCCGATATCT 415
||||||||| |||||| || |||||||| || ||||| || |||||||| || ||||| |
Sbjct 389 TTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGCATTATGTTTGGGCCAGATATTT 448
Query 416 GTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTACCTACAAT-GAAGCCAACCACCTG 474
||||||||||||| |||||||| |||||||||||||| |||||| ||| ||||||| ||
Sbjct 449 GTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAA-CCAACCATTTG 507
Query 475 ATCAAGAAGGATGTTCCATGTGAAACTGATCAGCTTACCCATGTGTACACCTTCATCCTC 534
||||||||||| || |||||||| |||||||||||||| || |||||||||||| |||||
Sbjct 508 ATCAAGAAGGAGGTCCCATGTGAGACTGATCAGCTTACTCACGTGTACACCTTCGTCCTC 567
Query 535 CGCCCAGATGCAACTTACAGCATTCTCATCGACAATGTTGAGAAGCAAACGGGTAGCCTT 594
|| |||||||| |||||||| ||| | || || ||||||||||||||||| |||||||||
Sbjct 568 CGTCCAGATGCTACTTACAGTATTTTGATTGATAATGTTGAGAAGCAAACTGGTAGCCTT 627
Query 595 TACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCT 654
|||||||||||||||||||||||| | |||||||| ||||| || || || |||||||||
Sbjct 628 TACTCTGACTGGGATCTTCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCTAAGAAGCCT 687
Query 655 GAGGATTGGGACGACCAAGAATACATTTCTGACCCTGAAGACAAGAAACCTGAC-GGATA 713
||||| ||||| ||| |||| |||||| | || || ||||||| || || | | |||||
Sbjct 688 GAGGACTGGGATGACAAAGAGTACATTCCAGATCCAGAAGACACTAAGCCAG-CGGGATA 746
Query 714 CGATGATATCCCAAAGGAGATCCCAGACACCGACTCAAAGAAGCCTGAGGACTGGGATGA 773
||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 747 TGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGCCTGAGGACTGGGATGA 806
Query 774 TGAAGAAGATGGTGAGTGGACTGCCCCGACCATCCCCAACCCTGAGTACA-TGGGTGAAT 832
||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||
Sbjct 807 TGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGG-TGAAT 865
Query 833 GGAAGCCTAAGCAAATCAAGAACCCCAACT-ACAAGGGCAAGTGGAAGGCACCAATGATT 891
||||||| ||| |||| ||||||||| || ||||||||||||||||||| ||||||||
Sbjct 866 GGAAGCCCAAGAAAATTAAGAACCCCG-CTTACAAGGGCAAGTGGAAGGCTCCAATGATC 924
Query 892 GACAACCCTGACTTCAAGGATGACCCAGAGCTCTATGTCTTCCCCAAGCTGAAGTATGTT 951
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 925 GACAACCCTGAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTT 984
Query 952 GGACTCGAATTGTGGCAGGTGAAATCAGGATCGCT-GTTTGATAATGTCTTGATCTGCGA 1010
||| | || ||||||||||||||||| || || || ||| || ||||||||| || ||||
Sbjct 985 GGAGTTGAGTTGTGGCAGGTGAAATCTGGTTC-CTTGTTCGACAATGTCTTGGTCAGCGA 1043
Query 1011 TGACCCAGACTACGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGA 1070
||||||||| ||||| ||||||||||| || ||||| |||||||||| ||||||||||||
Sbjct 1044 TGACCCAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGATGCGGA 1103
Query 1071 AAAAGCAGC-TTTCGATGAGGCGGAGAAGAAGA-ATGAGGAAGAGGAATCCAAGGACGCA 1128
|||||||| ||| || || || |||||||||| | |||||||||||||| ||||| ||
Sbjct 1104 GAAAGCAGCATTT-GACGAAGCTGAGAAGAAGAGA-GAGGAAGAGGAATCAAAGGATGCT 1161
Query 1129 CCTGCAGATTCTGATGCTGAAGAGGAACCAGAGGATGATGA---TG--G-AGATGAATCA 1182
||||| || || || ||||| || ||| |||| |||||||| || | |||||| |||
Sbjct 1162 CCTGCTGAATCCGACGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCA 1221
Query 1183 GATTCTGAATCTAAGGCTGAGGA 1205
|| |||||| ||| |||||||
Sbjct 1222 GACAATGAATCAAAGTCTGAGGA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999614230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5