BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471011
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1672 0.0
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-l... 56.5 5e-07
> AT1G09220.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:2977792-2979466 REVERSE LENGTH=1675
Length=1675
Score = 1672 bits (905), Expect = 0.0
Identities = 1078/1157 (93%), Gaps = 29/1157 (3%)
Strand=Plus/Plus
Query 1 ATGTATCTTGTTGGTGGAAACATGATTGATGCTTACAAAGTGTTTGATGAAATGCCTGAG 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 499 ATGTATCTTGTTGGTGGAAACATGATTGATGCTCACAAAGTGTTTGATGAAATGCCTGAG 558
Query 61 AGAAATCCGGTAACATGGAATGTGATGATCACTGGCCTGACTAATTTGGGAGATTTTGAA 120
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 559 AGAAATCCGGTAACTTGGAATGTGATGATCACTGGCCTTACTAATTTGGGAGATTTCGAA 618
Query 121 AAAGCTCTTTGCTTTTTGGAGAAGATGCTGAATCGGACGGTAGTGTCTTGGACCACTATC 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 619 AAAGCTCTTTGCTTTTTGGAGAAGATGCCGAATCGGACGGTAGTGTCTTGGACCACTATC 678
Query 181 ATTGATGGGTATGCACGAGTTA-ATAAACCCAAGGAAGCTACACTTC-TGTTTTCAAGAA 238
||||||||||||||||||| || |||||||||||||||||| || || ||||||||||||
Sbjct 679 ATTGATGGGTATGCACGAG-TAGATAAACCCAAGGAAGCTATAC-TCTTGTTTTCAAGAA 736
Query 239 TGGTTGCTTGCGATGCAATAAAGCCGAACGAGATAACCATTCTCGCCATTCTCCCAGCTG 298
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 737 TGGTTGCTTGCGACGCAATAAAGCCCAACGAGATAACCATTCTCGCCATTCTCCCAGCTG 796
Query 299 TTTGGAACTTGGGAGACCTAAAGATGTGCGGATCAGTTCATGCTTATGTTGGGAAAAGAG 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TTTGGAACTTGGGAGACTTAAAGATGTGCGGATCAGTTCATGCTTATGTTGGGAAAAGAG 856
Query 359 GGTTTGTTCCATGTGATATCCGTGTGACTAACTCTCTCATCGACGCTTATGCAAAATGTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GGTTTGTTCCATGTGATATCCGTGTGACTAACTCTCTCATCGACGCTTATGCAAAATGTG 916
Query 419 GGTGTATTCAAAGCGCGTTCAAGTTTTTCATCGAGATTCCAAACGGAAGGAAGAATCTTG 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 GGTGTATTCAAAGCGCGTTCAAGTTTTTCATAGAGATTCCAAACGGAAGGAAGAATCTTG 976
Query 479 TATCGTGGACAACGATGATCTCAGCGTTTGCAATGCACGGAATGGGCAAAGAAGCGGTCA 538
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 977 TATCGTGGACAACGATGATCTCGGCGTTTGCAATTCACGGAATGGGAAAAGAAGCGGTCA 1036
Query 539 ATATGTTCAAAGACATGGAAAGATTAGGATTGAAGCCCAACAGAGTGACCATGATCAGTG 598
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1037 GTATGTTTAAAGACATGGAAAGATTAGGATTGAAGCCGAACAGAGTGACCATGATCAGTG 1096
Query 599 TTTTGAACGCTTGTAGCCATGGAGGTTTAGCAGAAGAAGAGTTTCTAAAGTTTTTCAACA 658
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1097 TTTTGAACGCTTGCAGCCATGGAGGTTTAGCAGAAGAAGAGTTTCTAGAGTTTTTCAACA 1156
Query 659 AGATGGTAAACAAGTACAAGATCACACCGGATGTGAAGCACTATGGATGTCTAGTAGATA 718
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1157 CGATGGTAAACGAGTACAAGATCACGCCGGATGTGAAGCACTATGGATGTCTAGTAGATA 1216
Query 719 TGCTGAGAAGAAAAGGAAGACTAGAAGAAGCAGAGAAAATTGCTTTGGAGATTCCAATAG 778
|| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1217 TGTTGAGAAGAAAAGGAAGATTAGAAGAAGCAGAGAAGATTGCTTTGGAGATTCCAATAG 1276
Query 779 ATCAAAAGGCGGTGGTTTGGAGAATGCTGCTTGGAGCTTGTAGCGTTTATGATGATGCTG 838
| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AAGAAAAAGCTGTGGTTTGGAGAATGCTGCTTGGAGCTTGTAGCGTTTATGATGATGCTG 1336
Query 839 AAATGGCTGAGAGGGTTACTAGGAAGCTAACGGAATTGGAGAGATGGCATGGAGGAGACT 898
|| ||||||||||||||||||| ||||||| ||| | |||||| | |||||||||||||
Sbjct 1337 AATTGGCTGAGAGGGTTACTAGAAAGCTAATGGAGCTAGAGAGAAGCCATGGAGGAGACT 1396
Query 899 ATGTGCTTATGTCCAACATCTTCTGTGGTAATGGAAGATTTTCAGATGCCCAGAGATTTC 958
|||||||||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||
Sbjct 1397 ATGTGCTTATGTCCAACATCTTTTGTGGTACTGGAAGATTTTTAGATGCGCAGAGATTTC 1456
Query 959 GGAAACAGATGGATGTTAGAGGAGTAGCTAAACTTCCAGGACATTCACAAGTAACATAGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GGAAACAGATGGATGTTAGAGGAGTAGCTAAACTTCCAGGACATTCACAAGTAACATAGC 1516
Query 1019 --A-C-T--------------C-C-AATCTTCAATGTTTTGATCATAAACTCCCA-AAGT 1057
| | | | | |||||| | ||||||||| ||||||| | | || |
Sbjct 1517 GGAGCATGTATATATTTATGACTCCAATCTTTATTGTTTTGATGATAAACTTC-AGAATT 1575
Query 1058 TTTGGGAGCTCTGTTCTGATCTTCAATGTTTTGATCATAAACTCCCAAA-Gttttttttt 1116
||||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 1576 TTTGGGAGCTCTGTTCTGATCCTCAATGTTTTGATCATAAACTCCCAAAAGGTGTTTT-- 1633
Query 1117 CTGTTCTGAATGGGTTT 1133
|| |||||||||| |||
Sbjct 1634 CTATTCTGAATGGTTTT 1650
> AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:21939752-21941784 REVERSE LENGTH=2033
Length=2033
Score = 56.5 bits (30), Expect = 5e-07
Identities = 47/55 (85%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 37 AAAGTGTTTGATGAAATGCCTGAGAGAAATCCGGTAACATGGAATGT-GATGATC 90
|||||||||||||||||||||||||||| || || | |||||| | |||||||
Sbjct 619 AAAGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAAT-TCGATGATC 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55572003315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5