BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471012
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09230.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2252 0.0
> AT1G09230.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2979520-2982624 REVERSE LENGTH=1507
Length=1507
Score = 2252 bits (1219), Expect = 0.0
Identities = 1416/1505 (94%), Gaps = 37/1505 (2%)
Strand=Plus/Plus
Query 1 TCAATTTTATTGAAAAGAACCTGTCATCGTTCTGAGTTTGGGTTTTCGAGCTC---TAAT 57
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 4 TCAATTTTATTGAAAAGAACATGTCATCGTTCTGAGTTTGGGTTTTCGAGCTCTAATAAT 63
Query 58 GGCTGCACATGCGACATCGGAGCCGGCCGTGAATCTCCCGGCGACGCAATTTGAATCTCA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GGCTGCACATGCGACATCGGAGCCGGCCGTGAATCTCCCGGCGACGCAATTTGAATCTCA 123
Query 118 GGTTACAGAGCCTTTTGGGGTAACTCTAT-TGGTTCGACATCTTCCTGATGGAATTCCTC 176
|||||||||||| || ||||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 124 GGTTACAGAGCCGTTCGGGGTAACTCT-TCTAGTTCGGCATCTTCCTGATGGAATTCCTC 182
Query 177 ATGATATCGTCTCTCGGCTCTTTTCTCAGTACGGAGCTTCTGCTGTTCGTCCTTGCTCCG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATGATATCGTCTCTCGGCTCTTTTCTCAGTACGGAGCTTCTGCTGTTCGTCCTTGCTCCG 242
Query 237 GTGGAAAATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GTGGAAAATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAG 302
Query 297 CACATCGTCAATTAAACGGGCTGAGATTTCTTGGCAAGGTTCTACAAGTACAGAGAGCCA 356
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 303 CACATCGTCAATTAAATGGGCTGAGGTTTCTTGGCAAGGTTCTACAAGTACAGAGAGCCA 362
Query 357 ATAAACCTAACGAGAACAAGAAGTCTCGACAAATCGAAGAATCTGTGACCAAGGGGAATC 416
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ATAAACCTAATGACAACAAGAAGTCTCGACAAATCGAAGAATCTGTGACCAAGGGGAATG 422
Query 417 CTTTCTCTACAGTTAGCACCACCAATGATACATTATCTGGGCAGATGCTTTCTGGCGAAC 476
|||||||||| |||||||||| ||||||| || |||||||||||| |||||||||||||
Sbjct 423 CTTTCTCTACTGTTAGCACCAACAATGATTCAAAATCTGGGCAGATTCTTTCTGGCGAAC 482
Query 477 CTATAGCTCCAAAACTCGGCATTA-ACTATCCATTTCCTCCTCATCTGCAATATGCTTAC 535
| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 483 CGATAGCTCCAAAACTCGGCAT-AGACTATCCATTTCCTCCTCACCTGCAATATGCTTAC 541
Query 536 CCACCACCCGATGCAAATATATTAGCCAACATTACTAATGCCCTTATCGCTGTCCCACCA 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCACCACCCGATGCAAATATATTAGCCAACATTACTAATGCCCTTATCGCTGTCCCACCG 601
Query 596 TTATACACCCAGGTGCTACATCTGATGAACAAAATGAACCTTCCACCTCCTTTTCGCCTG 655
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 602 TTATACACCCAGGTGCTGCATCTGATGAACAAAATGAATCTTCCACCTCCTTTTCGCCTG 661
Query 656 GCCCTGCCCACACCACCTCTACCTAAAGCAGGCCCCCAACCAACTGAGTTGGAGCATCAA 715
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 662 GCCCTGCCCACACCACCTCTACCTAAAGCAGGCCCCCAACAAACTGACTTGGAGCATCAA 721
Query 716 TCTAGTAGCGAGTCAGAGATGGAATCTGATGAGGATACAGGTACATCAAAATCAGGAAGG 775
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 722 TCTAGTAGCGAGTCAGAGATGGAATCTGATGAGGATATAGGTACGTCAAAATCAGGAAGG 781
Query 776 AAGCGTGCTAGGCATGAAACTCTTGTTGGTCCTGGTATGGACAA---TG----A---GA- 824
||||||||||| |||| | ||||||||||| |||||||||||| || | ||
Sbjct 782 AAGCGTGCTAGACATGGATTTCTTGTTGGTCTTGGTATGGACAAGGATGTGCCACATGAG 841
Query 825 -CTGTTGGAGTGAAACCTTCGTCTTTGACCCCAAAAGAGATCCCTCGAATAAGAAAGAAT 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ACTGTTGGAGTGAAACCTTCGTCTTTGACCCCAAAAGAGATCCCTCGAATAAGAAAGAAT 901
Query 884 AAACACGTTATGCAGATCAAGATTATCC-CAAAAGCTCCTCAAGACGAATATAAAGAGGA 942
||||||||||||||||||||||| | || | |||| | ||||||||||||||||||||||
Sbjct 902 AAACACGTTATGCAGATCAAGATCA-CCTCTAAAGTTACTCAAGACGAATATAAAGAGGA 960
Query 943 AAGTGAGAATGAAGACCCTGCAGACGAGCCCAAAGAAGAAGATTCAAATTTGAAACCCTT 1002
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 AAGTGAGAATGAAGACCCTGCAGACGAGCCCAAAGAAAAAGATTCAAATTTGAAACCCTT 1020
Query 1003 TGCGAGTTTAGAGGAGTTGGAGAAAGGAAGGTTACCTCCACAGGATATTCTTTCACTCCC 1062
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGCAAGTTTAGAGGAATTGGAGAAAGGAAGGTTACCTCCACAGGATATTCTTTCACTCCC 1080
Query 1063 TATGTTCAAGAACTACACAGCTGGGAATCCGTCGCTTGTGCTGTATATCAAAAACCTTGC 1122
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1081 TATGTTCAAGAACTACACAGCTGGGAATCCGTCGGTTGTACTGTATATCAAAAACCTTGC 1140
Query 1123 CAAAGATGTTGTTATTGATGATTTCTATTACATATTTGGGTCACAGTTTGAAAGC-GTCG 1181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1141 CAAAGATGTTGTTATCGATGATTTCTATTACATATTTGGGTCACAGTTTGAAAGCAG-CG 1199
Query 1182 AAGCT-GCTAAATCAATTCTTGGTGTGAGGCTAATGCAGGAAGGAAGGATGAGAGGGCAA 1240
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAG-TAGCTAAATCAAGTCTTGGTGTGAGGCTAATGCAGGAAGGAAGGATGAGAGGGCAA 1258
Query 1241 GCCTTTTTGACATTTCCATCTGTTGAAGTCGCACATCGTGCTCTGAATCTTGTAAATGGT 1300
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCTTTTTTGACATTTCCGTCTGTTGAAGTCGCACATCGTGCTCTGAATCTTGTAAATGGT 1318
Query 1301 TTTGTGTTCAAAGGAAAACCAATGATAATCCAGTTTGGCAGGAATCCTGGAGCAGCCAAG 1360
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 TTTGTGTTCAAAGGCAAACCAATGATAATCCAGTTTGGCAGGACTCCTGGAGCAGCCAAG 1378
Query 1361 CCAAACGAATGATGATGATATATATAACATTAGA-GGTTTTTGAGGATTATCTGCAAATT 1419
|||||||||||||||||||||||||||||| | | ||||||||| || || ||||||||
Sbjct 1379 CCAAACGAATGATGATGATATATATAACATCA-ACGGTTTTTGAAGAGTAGGTGCAAATT 1437
Query 1420 CTTTTTGTGTATCATCATCATCATTGTGTAACTCTT-GACTCGCAGATTAAAGTCAATAA 1478
|||||||||||||||||| || ||||||| ||||| ||| |||||||||||||
Sbjct 1438 CTTTTTGTGTATCATCAT-------GT--AACTCTTTGACTCTCAGTTTAAAGTCAATAA 1488
Query 1479 AATAT 1483
|||||
Sbjct 1489 AATAT 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5