BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471013
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09240.1 | Symbols: NAS3, ATNAS3 | nicotianamine synthase 3 ... 1941 0.0
AT1G56430.1 | Symbols: ATNAS4, NAS4 | nicotianamine synthase 4 ... 701 0.0
> AT1G09240.1 | Symbols: NAS3, ATNAS3 | nicotianamine synthase
3 | chr1:2984881-2986130 FORWARD LENGTH=1250
Length=1250
Score = 1941 bits (1051), Expect = 0.0
Identities = 1184/1247 (95%), Gaps = 14/1247 (1%)
Strand=Plus/Plus
Query 1 ACACCACCCGAGAACACACAATTATTTTCCAAAGA-AACAGAGAAAAACCAATAACCTCA 59
||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||||
Sbjct 1 ACACCACCCGAGAACACACGATTATTCTCCAAAGAGAA-AGAGAAAAATCAATAACCTC- 58
Query 60 TAGCTAGTGTCGACATGGGTTGCCAAGACGAACAATTGGTGCAAACAATATGCGATCTCT 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 -A--TAGTGTCGACATGGGTTGCCAAGACGAACAATTGGTGCAAACAATATGCGATCTCT 115
Query 120 ACGAAAAGATCTCAAAGCTGGAGAATCTAAAACCATCCGAAGATGTCAACATTCTCTTCA 179
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 116 ACGAAAAGATCTCAAAGCTTGAGAGTCTAAAACCATCCGAAGATGTCAACATTCTCTTCA 175
Query 180 AGCAGCTTGTTTCCACATGCATCCCACCAAACCCTAACATCGACGTCACCAAGATGTGTG 239
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 176 AGCAGCTCGTTTCCACATGCATACCACCAAACCCTAACATCGATGTCACCAAGATGTGTG 235
Query 240 ACAAAGTCCAAGAGATTCGACTTAACCTCATCAAGATCTGTGG-CGTAGCTGAAGGTCAC 298
||| ||||||||||||||||||||| ||||||||||| ||||| | |||| |||||||||
Sbjct 236 ACAGAGTCCAAGAGATTCGACTTAATCTCATCAAGATTTGTGGTC-TAGCCGAAGGTCAC 294
Query 299 TTAGAACATCATTTCTCTTCGATCTTGACTTCTTTCCAAGACAACCCACTTCATCATTTA 358
|||||| | |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 295 TTAGAAAACCATTTCTCTTCGATCTTGACCTCTTACCAAGACAACCCACTTCATCATTTA 354
Query 359 AACATTTTCCCTTATTACAACAACTATTTAAAACTAGGAAAGCTCGAATTCGACCTCCTC 418
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 355 AACATTTTCCCTTATTACAACAACTATTTGAAACTCGGAAAGCTCGAGTTCGACCTCCTC 414
Query 419 -ACACAAAA-CTCAAATGGCTTTGTCCCAAAGAGTGTGGCCTTCATTGGATCTGGTCCTC 476
| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 415 GA-ACAAAACCT-AAATGGCTTTGTCCCAAAGAGTGTGGCTTTCATTGGATCTGGTCCTC 472
Query 477 TTCCTCTTACTTCCATCGTTCTTGCTTCATTACATCTCAAAGACACAATCTTTCACAACT 536
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 TTCCTCTCACTTCCATCGTTCTTGCTTCATTCCATCTCAAAGACACAATCTTTCACAACT 532
Query 537 TTGACATCGACCCATCAGCGAACTCACTCGCTTCCCTTCTGGTTTCCTCTGATCCAGACA 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 533 TTGACATCGACCCATCAGCGAACTCACTCGCTTCTCTTCTGGTTTCCTCTGATCCAGACA 592
Query 597 TCTCTCAACGGATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAGCTTGAGGA 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 593 TCTCTCAACGCATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAGCTTAAAGA 652
Query 657 GCTTCGATGTCGTGTTTCTAGCTGCTCTTGTTGGAATGAACAAGGAGGAGAAAGTTAAAG 716
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 653 GCTTTGATGTCGTGTTTCTAGCTGCTCTTGTTGGAATGAACAAAGAGGAGAAAGTTAAAG 712
Query 717 TGATCGAGCATCTGCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCTTAGGAGTGCTC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGATCGAGCATCTGCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCTTAGGAGTGCTC 772
Query 777 ATGGTCCGAGAGCATTTCTTTATCCGATCGTTGAGCCGTGTGATCTTCAGGGGTTCGAGG 836
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ATGGTCCGAGAGCGTTTCTTTATCCGATCGTTGAGCCGTGTGATCTTCAGGGGTTCGAGG 832
Query 837 TTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGATCTCTAAAAAGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGATCTCTAAAAAGC 892
Query 897 ATCCTGTTGTTTCAACTGGGAATGTTGGTGGACCTAATTCATGCTTGCTCAAGCCTTGCA 956
|||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 ATCCAGTTGTTTCAATTGGGAATGTTGGTGGTCCTAATTCATGCTTGCTCAAGCCTTGCA 952
Query 957 ACTGTTCCAAGATCCACGCGATAATGAACAAGAACATGATGATCGAGAAGTTCGGAGCTA 1016
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 953 ACTGTTCCAAGACCCACGCGAAAATGAACAAGAACATGATGATCGAGGAGTTCGGAGCTA 1012
Query 1017 GGGAAGAACAGTTGTCTTAAAGACGACGTTTCTTGTCTCTTAATTCTCTATCTTCTGGAA 1076
|||| ||||||||||||||| || |||||||||||| || |||||||||||||| |||||
Sbjct 1013 GGGAGGAACAGTTGTCTTAAGGAGGACGTTTCTTGTTTCCTAATTCTCTATCTTATGGAA 1072
Query 1077 GCTTC-TAATTATGAtttgtatctttgtgttgtgtgtgggtgtcttttcttaattgttct 1135
||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 1073 GCTTCCTAATTATGATTTGTGTCTTTGTGTTGTGTGTTGGTGTCTTTTCTCAATTGTTCT 1132
Query 1136 ttgtttgttt-atttttctttctatatttctAGAAATGGATTTGCTTCCCGCGACACTGT 1194
|||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1133 TTGTTTGTTTTATTTTTCTTTCTATATTCCTAGAAATGGATTTGTTTCGCGCGACACTGT 1192
Query 1195 TGGGCTGAAACAGAACACGATTTTGTCTCCTGCTCTTAACTTATTTA 1241
||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1193 TGGGCTGAAACAGAACACGATTTTGTCTCATGCTCTTAACATATTTA 1239
> AT1G56430.1 | Symbols: ATNAS4, NAS4 | nicotianamine synthase
4 | chr1:21136944-21138087 FORWARD LENGTH=1144
Length=1144
Score = 701 bits (379), Expect = 0.0
Identities = 695/844 (82%), Gaps = 35/844 (4%)
Strand=Plus/Plus
Query 64 TAGTGTCGACATGGG---TTGCCAAGACGAACAATTGGTGCAAAC-A-ATATGCGATCTC 118
||||||||||||||| |||||||||||| ||| | || |||| | || ||||||||
Sbjct 70 TAGTGTCGACATGGGTTATTGCCAAGACGACCAACTCGT--AAACAAGATCTGCGATCTT 127
Query 119 TACGAAAAGATCTCAAAGCTGGAGAATCTAAAACCATCCGAAGATGTCAACATTCTCTTC 178
|||||||||||||| ||||| |||| ||||| || | ||||||||| ||| |||||||
Sbjct 128 TACGAAAAGATCTCGAAGCTTGAGACCCTAAAGCCTTGTGAAGATGTCGACACTCTCTTC 187
Query 179 AAGCAGCTTGTTTCCACATGCATCCCACCAAACCCTAACATCGACGTCACCAAGATGTGT 238
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 188 AAGCAGCTCGTGTCCACATGCATACCACCAAACCCTAACATCGACGTCACCAAGATGTCT 247
Query 239 GACAA-AGTCCAAGAGATTCGACTTAA-CCTCATCAAGATCTGTGGCGTAG-CTGAAGGT 295
|| || | |||||||||| || | || ||||||||| |||||||| | || ||||||||
Sbjct 248 GAAAACA-TCCAAGAGATGAGA-TCAAACCTCATCAAAATCTGTGGTG-AGGCTGAAGGT 304
Query 296 CACTTAGAACATCATTTCTCTTCGATCTTGACTTCTTTCCAAGACAACCCACTTCATCAT 355
||||||| ||||| |||||||| ||||| || ||||| |||| ||||| |||||||||
Sbjct 305 TACTTAGAGCATCACTTCTCTTCAATCTTAACCTCTTTTGAAGATAACCCCCTTCATCAT 364
Query 356 TTAAA-CATTTTCCCTTATTACAACAACTATTTAAAACTAGGAAAGCTCGAATTCGACCT 414
|| || | |||||| ||| ||||||||||| | |||||| | |||||||| || || ||
Sbjct 365 TTGAATCTTTTTCC-TTACTACAACAACTACCTCAAACTAAGCAAGCTCGAGTTTGATCT 423
Query 415 CCTC-ACACAAAAC-TCAAATGGCTTTGTCCCAAAGAGTGTGGCCTTCATTGGATCTGGT 472
|||| | ||| ||| | ||| || ||||| |||| || ||| || |||||||| ||||||
Sbjct 424 CCTCGA-ACAGAACCT-AAACGGTTTTGTTCCAAGGACTGTAGCTTTCATTGGCTCTGGT 481
Query 473 CCTCTTCCTCTTACTTCCATCGTTCTTGCTTCATTAC-ATCTCAAAGACACAATCTTTCA 531
||||| |||||||||||| |||||||||| || || | ||||||||||| | ||||||||
Sbjct 482 CCTCTCCCTCTTACTTCCGTCGTTCTTGCCTC-TTCCCATCTCAAAGACTCGATCTTTCA 540
Query 532 CAACTTTGACATCGACCCATCAGCGAAC-TCACTCGCTTCCC-TTCTGGTTTCCTCTGAT 589
|||||||||||||||||||||||||| | | || | | || ||||||| ||||||
Sbjct 541 TAACTTTGACATCGACCCATCAGCGAATATGG-TAGCAGCTCGTT-TGGTTTCGTCTGAT 598
Query 590 CCAGA-CATCTCTCAACGGATGTTCTTCCACACCGTTGATATAATGGACGTGACAGAGAG 648
|| || | | |||||||| ||||| ||||| || |||||||||||||| || || |||||
Sbjct 599 CCTGATCTT-TCTCAACGTATGTTTTTCCATACTGTTGATATAATGGATGTAACCGAGAG 657
Query 649 CTTGA-GGAGCTTCGATGTCGTGTTTCTAG-CTGCTCTTGTTGGAATGAACAAGGAGGAG 706
||||| || ||||||| || ||||| || | |||||||||| || ||| | || |||||
Sbjct 658 CTTGAAGG-GCTTCGACGTTGTGTT-CTTGGCTGCTCTTGTAGGGATGGATAAAAAGGAG 715
Query 707 AAAGTTAAAGTGATCGAGCATCT-GCAGAAACACATGGCTCCTGGTGCTGTGCTCATGCT 765
|| ||||| ||| |||||||||| | ||||||||||| ||||||||||| ||||||||||
Sbjct 716 AAGGTTAAGGTGGTCGAGCATCTTG-AGAAACACATGTCTCCTGGTGCTTTGCTCATGCT 774
Query 766 TAGGAGTGCTCATGGTCCGAGAGCATTTCTTTATCCGATCGTTGAGCCGTGTGATCTTC- 824
|| || |||||||| || ||||| ||||| ||||| ||||||||||| |||||||| |
Sbjct 775 GAGAAGCGCTCATGGACCTAGAGCTTTTCTCTATCCAATCGTTGAGCCTTGTGATCT-CG 833
Query 825 AGGGGTTCGAGGTTTTGTCTATTTATCACCCAACAGATGATGTTATCAACTCCGTGGTGA 884
| || ||||| ||||| || |||||||||| || ||||| |||||||||||| | || |
Sbjct 834 AAGGTTTCGAAGTTTTATCGGTTTATCACCCTACCGATGAAGTTATCAACTCCATTGTAA 893
Query 885 TCTC 888
||||
Sbjct 894 TCTC 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5