BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471014
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09250.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1075 0.0
> AT1G09250.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:2989378-2990357 FORWARD LENGTH=980
Length=980
Score = 1075 bits (582), Expect = 0.0
Identities = 767/850 (90%), Gaps = 38/850 (4%)
Strand=Plus/Plus
Query 46 TTAATGGTGGAGTCTCTGTTTCCGAGCATAGAAAACACAAGTGAATCGTCTCCGGAGTCG 105
|||||||||||||||||||| |||||||| ||||||||| ||||||||||| | ||
Sbjct 129 TTAATGGTGGAGTCTCTGTTCCCGAGCATCGAAAACACAGGTGAATCGTCT-C-GA---- 182
Query 106 AGACGGAAGAAACCGAGGATATC-G-GA-GAC---GGCGGAGATAGAGGCACGACG-GAT 158
||| ||||| ||||||||||| | || | | ||||||||||||||||||||| | |
Sbjct 183 AGA---AAGAAGCCGAGGATATCAGAGACGGCGGAGGCGGAGATAGAGGCACGACGTG-T 238
Query 159 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTCTAA 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTGTAA 298
Query 219 GCTCGTCGAAGCTTTACGTCGAGTTCGTCAGAGGTCGTCCACCA---GTA-CG--GAGAC 272
|||||||||||||||||| |||||||||||||| || ||||||| | | | |||||
Sbjct 299 GCTCGTCGAAGCTTTACGCCGAGTTCGTCAGAGATCTTCCACCACCAGCAACAACGAGAC 358
Query 273 CGATAAAGTCGTCTCCGGCGCGGCGAGAGAGATACGTGAGACGGCGGATCGAGTTCTGGC 332
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 359 CGATAAACTCGTCTCCGGCGCGGCGAGGGAGATACGTGATACGGCGGATCGAGTTCTAGC 418
Query 333 TGCGTCGGCTCGTGGCACGACTCGGTGGAGCAGAGCGATTTTATCGAGTCGCGTCCGAGC 392
|||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 TGCGTCCGCTCGTGGTACGACTCGGTGGAGCAGAGCGATTTTAGCGAGTCGCGTCCGAGC 478
Query 393 GAAGTTGAAGAAACATAGAAAGGCGAAGAAGTCAACCGGAAATTGTAAATCGAGAAAAGG 452
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 479 GAAGCTGAAGAAACATAGAAAGGCGAAAAAGTCAACGGGAAATTGTAAATCGAGAAAAGG 538
Query 453 TGTGACGGAGGCGAATCGGATTAAGTTACCGGCGGTTGACAGAAAACTGAAGATTCTCGG 512
| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 539 TCTCACGGAGACGAATCGGATTAAGTTACCGGCGGTTGAGAGAAAACTGAAGATTCTTGG 598
Query 513 CCGGTTAGTTCCCGGTTGCCGGAAAGTCTCTGTACCTAATCTTTTAGATGAAGCGACCGA 572
||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 CCGTTTGGTTCCTGGTTGCCGGAAAGTCTCTGTACCGAATCTTTTAGATGAAGCGACCGA 658
Query 573 TTACATCGCGGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTAGCAGAACTTTTAAC 632
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 TTACATCGCAGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTCGCCGAACTTTTAAC 718
Query 633 CGCCGCCGCACCACGAACGACGTTGACGGGAACTTAACGGCGGCGGCAGTTAGTTTGTCA 692
||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 719 CGCAGCCGCACCACGGACGACGTTGACCGGAACTTAACGGCGGC---AGTTAGTTTGTCA 775
Query 693 GTTGTTAATTAGCttttgtttttttttacctttttacccctttattttggct-caagtgt 751
||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 776 GTTGTTAATTAGCTTTTCTTTT-----ACCTTTTTACCCCTTTATTTTGGCTTCAAGTGT 830
Query 752 ttttttttAATCGTCGCCGCGattttaatttattaaattcatgtattttatttgtataca 811
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TTTTTTTTTCTCGTCGACGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 890
Query 812 tcag---tt-ttttattt-gtagccattttgatctttctttggttttCC-TTAGATAATC 865
||| || |||| ||| ||| ||||||||||||||||||| |||| | ||||||||||
Sbjct 891 TCATCACTTCTTTTTTTTTGTATCCATTTTGATCTTTCTTTGTTTTTTCGTTAGATAATC 950
Query 866 AAAGTTATCT 875
||||||||||
Sbjct 951 AAAGTTATCT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5