BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471018
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese... 2926 0.0
> AT1G09280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese-like
(InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645);
BEST Arabidopsis thaliana protein match is: Rhodanese/Cell
cycle control phosphatase superfamily protein (TAIR:AT2G40760.1);
Has 5925 Blast hits to 5912 proteins in 1592 species:
Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi -
408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source:
NCBI BLink). | chr1:2998100-3001315 REVERSE LENGTH=1917
Length=1917
Score = 2926 bits (1584), Expect = 0.0
Identities = 1719/1786 (96%), Gaps = 2/1786 (0%)
Strand=Plus/Plus
Query 7 AAAGAAGAGAAACCCTAATGGGAACGAGCTCGTGTGGCGATGGCGAGAAGCAGAGGATTG 66
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 46 AAAGAAGAGAAACCCTAATGGGAACGAGCTCGTGTGGCGATCACGAGAAGCAGAGAATTG 105
Query 67 AAGATGAAGAGCAATACGGTGTGTTGCTGTATTACAAGTACACCTCTGTCCCTGATCTAG 126
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 106 AAGATGAAGAGCAATACGGTGTGTTGCTGTACTACAAGTACACCTCTGTTCCTGATCTAG 165
Query 127 ATGAGCTCGTTTCCTTCTATGAATCTAGCTGCAACTCATTAGGTCTACTCGGCCGAGTCA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 ATGAGCTCGTTTCCTTCTATGAATCTAGCTGCAACTCATTAGGTCTACTCGGCCGAGTCA 225
Query 187 GGCTCTCTCCTAAGGGAGTCAATGTCACTGTTGGTGGGAAATTAACTGCATTGGAGGAAC 246
||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 226 GGCTCTCCCCTAAAGGCGTCAATGTTACTGTTGGTGGGAAATTAACTGCATTGGAGGAAC 285
Query 247 ATATTTCCGCTGCAAAGTCAAATTGTTTGTTTGAAGGGACTGACTTCAAGCTTGCATCTT 306
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ATATTGCCGCTGCAAAGTCGAATTGTTTGTTTGAAGGGACTGACTTCAAGCTTGCATCTT 345
Query 307 GCCATCATCCCTTGAATGACAAAGTTGCTGAGGAATGTGGGTTTACATCACTCTCCATCC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GCCATCATCCCTTGAATGACAAAGTTGCTGAGGAATGTGGGTTTACATCACTCTCCATCC 405
Query 367 GAGTTGTTGAGGAGTTAGTGACCTTTAGTCCTTGCCCTCCCCTTAAACCCCCAGAAATTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GAGTTGTTGAGGAGTTAGTGACCTTTAGTCCTTGCCCTCCCCTTAAACCCCCAGAAATTT 465
Query 427 CAAATGCTGGAAAGCATCTTTCTGCTGCGGAGTTTCATTCGGTCTTGCAGAGTGCCAATG 486
|||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 466 CAAATGCTGGGAAGCATCTCTCTGCTGCAGAGTTTCATTCGGTCCTGCAGAGTGCCAATG 525
Query 487 GGAAGTCTGAGAATAAGGATCTTGTTTTGCTTGATGCGAGGAACCTGTACGAGACACGGA 546
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 526 GGAAGTCTGAGAATAAGGAACTTGTTTTGCTTGACGCGAGGAACCTGTACGAGACACGGA 585
Query 547 TTGGAAAATTCGAATCAGAAAATGTTGAGACCCTTGATCCTGAAATCAGGCAGTATAGCG 606
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 586 TTGGAAAATTCGAATCAGAAAATGTGGAGACCCTTGATCCTGAAATCAGGCAATATAGCG 645
Query 607 ATTTGCCAACCTGGATTGATCAGAATGCTGAGAAATTGAAGGGCAAAAATGTGCTCATGT 666
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 646 ATTTGCCAACCTGGATTGATCAGAATGCCGAGAAAATGAAGGGCAAAAACGTGCTCATGT 705
Query 667 ACTGTACTGGTGGAATCAGATGTGAAATGGCATCTGCATATATCAGATCTAAAGGCGCTG 726
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 706 ACTGCACTGGTGGAATCAGATGTGAAATGGCATCTGCATATATCAGATCTAAAGGTGCTG 765
Query 727 GATTTGAAAATACTTTTCAGCTCTATGGTGGCATACAGAGATACCTTGAACAATTTCCCA 786
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GATTTGAGAATACTTTTCAGCTCTATGGTGGCATACAGAGATACCTTGAACAATTTCCCA 825
Query 787 GTGGTGGGTTCTTCAAAGGGAAGAACTTTGTGTTTGATCACCGGATCTCAGTTGGGAGCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTGGTGGGTTCTTCAAAGGGAAGAACTTTGTGTTTGATCACCGGATCTCAGTTGGGAGCT 885
Query 847 CAAAAGAGGATATAATAGGCAGTTGCCTTCTCTGCAACAATAACTTTGACGACTATTCTC 906
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 886 CAAAAGAGGATATAATAGGCAGCTGCCTTCTCTGCAACAATACCTTTGACGACTATTCTC 945
Query 907 CACGTTGCCGTTGCAGATTATGCCGGATGCTTGTTTTAGTCTGCAATCACTGTCGGGTTA 966
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 946 CACGTTGCCGTTGCAGATTATGCCGGATGCTTGTTTTAGTCTGCAATCATTGTCGGGTTA 1005
Query 967 AAGGAGATATATATGTGTGTGAGCTGTGTCGTAAACACGGAAAAAGTGAAGTCCCTTTGA 1026
|||||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1006 AAGGAGATATATATATATGTGAGCTGTGTCGTAAACACGGAAAAGGGGAAGTCCCTTTGA 1065
Query 1027 GTCTTGATCCCTCAAACCAACCTTCTGAAAGCAATGGTGACAATACAAGACGGAAGCTGA 1086
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GTCTTGATCCCTTAAACCAACCTTCTGAAAGCAATGGTGACAATACAAGACGGAAGCTGA 1125
Query 1087 GGATATTGTGCTTGCATGGTTTTAGGCAGAACGCGTCTGGCTTCAAAGGGAGGACCGGAT 1146
|||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 1126 GGATCTTGTGCTTGCATGGATTTAGGCAGAACGCGTCTAGCTTTAAAGGGAGGACCGGAT 1185
Query 1147 CACTAGCAAAGAAACTGAAGAATATCGCCGAGCTTGTTTTTC-TCGATGCACCACACGAA 1205
||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||
Sbjct 1186 CACTAGCAAAGAAACTGAAGAATATTGCCGAGCTTGTGTT-CATCGATGCACCACACGAA 1244
Query 1206 CTACAGTTCATCTACCAAACTGCTACCCCTCCATCCGGAGCATGCAACAAGAAGTTTGCG 1265
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1245 TTACAGTTCATCTACCAAACTGCTACCCCTCCATCCGGAGTATGCAATAAGAAGTTTGCG 1304
Query 1266 TGGTTGGTGTCATCAGATTTTGATAAACCGAGTGAAACAGGCTGGACAGTAGCCCAATGC 1325
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1305 TGGTTGGTGTCATCAGATTTTGATAAACCGAGTGAAACAGGCTGGACAGTGGCCCAATGC 1364
Query 1326 CAGTTCGATCCGTTGCAGTATCAGACTCAAACTGAAGGGTTTGATAAATCGTTGACATAC 1385
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CAGTTCGATCCATTGCAGTATCAGACTCAAACTGAAGGGTTTGATAAATCGTTGACATAC 1424
Query 1386 TTGAAGACGGTTTTTGCAGAGAAAGGGCCTTTTGATGGCATTCTCGGATTCTCTCAAGGT 1445
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TTGAAGACGGCATTTGAAGAGAAAGGGCCTTTTGATGGCATTCTCGGATTCTCTCAAGGT 1484
Query 1446 GCGGCAATGGCTGCAGCTGTATGTGGGAAACAGGAGCAGCTCGTAGGTGAAATAGACTTC 1505
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GCAGCAATGGCTGCGGCTGTATGTGGGAAACAGGAGCAGCTCGTAGGTGAAATAGACTTC 1544
Query 1506 AGATTCTGCGTACTGTGCTCGGGTTTCACAACGTGGCCATTGTTAGAGAAGAAGGAGAAA 1565
||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct 1545 AGATTCTGCGTGTTGTGCTCGGGTTTCACACCGTGGCCATTGTTGGAGATGAAGGAGAAA 1604
Query 1566 GGATCGATTAGATGCCCTTCACTTCACATATTTGGAAGCCAGCCTGGAAAAGACAGACAG 1625
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1605 CGATCGATTAAATGCCCTTCACTTCACATATTCGGAAGTCAGCCTGGAAAAGACAGACAA 1664
Query 1626 ATTGTGACTCAAGCCAGCTCAGATCTGGCGGGGTTGTTTGATGACGGTTGCGCCACCATT 1685
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1665 ATTGTGACTCAAGCCAGCTCAGACCTGGCGGGGTTGTTTGAAGATGGTTGCGCCACCATT 1724
Query 1686 ATTGAGCATGATTTTGGCCACATCATTCCTACAAAGTCTCCTTATATTGATGAGATTAAA 1745
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GTTGAGCACGATTTTGGCCACATCATTCCTACAAAGTCTCCTTATATTGATGAGATTAAA 1784
Query 1746 GCTTTCCTTTACCAATTCATTTGAGGACTATATTAACAAGACAAGA 1791
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1785 GCTTTCCTTTACCAATTCATTTGAGGACTTTATTAACAAGACAAGA 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5