BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471019
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09290.1 | Symbols: | unknown protein; Has 73 Blast hits to... 1814 0.0
> AT1G09290.1 | Symbols: | unknown protein; Has 73 Blast hits
to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa
- 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr1:3001517-3003762 REVERSE
LENGTH=1259
Length=1259
Score = 1814 bits (982), Expect = 0.0
Identities = 1154/1235 (93%), Gaps = 19/1235 (2%)
Strand=Plus/Plus
Query 18 GAGAGTAACGATGGCTGCTGCAGAACAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 77
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 38 GAGAGTAACGATGGCTGCTGTAGAAGAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 97
Query 78 GCCTGTGTGTGAAAAAAGAGAAAGAGGAGACGAAGCTGAAACATTGACTCCGTGGGAGCA 137
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 98 GACTGTGTGTGAAAAAAGAGAAAGAGGAGAGGAAGCTGAAACATTGACTCCATGGGAGCA 157
Query 138 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCATCTTCTCTGCTTCA 197
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 158 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCCTCTTCTCTGCTTCA 217
Query 198 TCATTCTCATTCCGGATTCCTAGTCACCTGCACCATCAAAAGGGAGAAAAGTGCTACTAA 257
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 218 TCATTCTCATTCCGGATTCCTCGTCACCTGCAACATCAAAAGGGAGAAAAGTGCTACTAA 277
Query 258 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTCAACT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 278 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTGAAGT 337
Query 318 TCTAAGA-TCTACTGCATCaaaaaaacaaaaaCTTTCTGAACAAGAGATAGAGGTTGGCG 376
||||| | ||||||||||| |||||||||||| ||| || |||||||| ||||| ||||
Sbjct 338 TCTAA-ACTCTACTGCATCCAAAAAACAAAAAGTTTGTGCACAAGAGACAGAGGAAGGCG 396
Query 377 AAGAGAAGACCGTACCTCCTGAGGATGATGCCCTGCAGGAAACAGGTGGAGATCCAAATG 436
||||||||| ||||||| |||| |||||||| ||||||||||||||| | |||||||||
Sbjct 397 GAGAGAAGACTGTACCTCTTGAGAATGATGCCTTGCAGGAAACAGGTGAAAATCCAAATG 456
Query 437 TTGAGGATCTCAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTGA 496
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 457 TTGAGGATCTTAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTAA 516
Query 497 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCGATACAACAAATA 556
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 517 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCAATACAACGAATA 576
Query 557 TCGTATCACAAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 616
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TCGTATCACGAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 636
Query 617 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 696
Query 677 TATCAAAGCTTGTTCAGAGGTTTGTCGATAATAAAGACAATATACTATCAAAACCCGTGA 736
||||||||||||||||| |||||||| || |||||||||||| |||||||||||| ||||
Sbjct 697 TATCAAAGCTTGTTCAGCGGTTTGTCAATGATAAAGACAATACACTATCAAAACCTGTGA 756
Query 737 AGTTTGCAGCTGGGTATCAGCGTAGAGGTGTGGAGGAGACGAAAGGAAAGATTCAGAAAG 796
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 757 AGTTTGCAGCTGGGTATCAACGTAGAGGTGCGGAGGAGACGAAAGGAAAGATTCGGAAAG 816
Query 797 AAGCATCAGAGGTTCTAGATCAATGTCCGTTGCTGGACCGCATCAAATGCTTTGAAACTG 856
| || ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 817 ACGCTTCAGATGTTCTAGTTCAATGTCCGTTGCTGGACCGCATTAAATGCTTTGAAACTG 876
Query 857 TGGCGGCTGGAGTGAAAGACATTGTACCAGATTCAGTAGTGGATCT-AAAGTCTCCAGAG 915
|||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 877 TGGCAGCTGGAGTGAAAGACATTGTACCAGATTCAGTTGTGGATCTCAAA-TCTCCAGAG 935
Query 916 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATACCAAGTGGCTCCTTTGTAGCT 975
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 936 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATATCAAGTGGCTCCTTTGTAGCT 995
Query 976 GCTGTTTCAGCGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1035
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GCTGTTTCAGTGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1055
Query 1036 CTAGTCCCTGAAAGCAAACACAAAAAGGGACAAAACTGACGAGCA-CAAAGG-TGTATCG 1093
|||||||||||| ||||||||||||||||| |||||||| || |||||| || ||||
Sbjct 1056 CTAGTCCCTGAATCCAAACACAAAAAGGGACCAAACTGAC-AGGTGCAAAGGCTG-ATCG 1113
Query 1094 TTGCATTCGAATTTCCAGAGCCAAAGAGATCAATAGAAGTAGTAATCTCTCTGTTTTTGT 1153
||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1114 CTGCATTCGATTTTCGAGAGCCAAAGATATCAATAGAAGTTGTAATCTCTCTGTTTTTGT 1173
Query 1154 TTAGATACAGTATGTCTTTTGCTTTCAGTATCTCTAATGGAGTCAACAACAACGTGTAAC 1213
||||||| | |||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct 1174 TTAGATA---T--GTCTTTTGCTTTCAGTATCTCTAATGGAGTTAACAACAATGTCTGAC 1228
Query 1214 CAATGttttttttATTCAAGAGACCAAAGATAAAC 1248
| ||||| |||||||||| |||||||||||
Sbjct 1229 CTATGTT------ATTCAAGAGAACAAAGATAAAC 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5