BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471021
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09300.1 | Symbols: | Metallopeptidase M24 family protein |... 2684 0.0
> AT1G09300.1 | Symbols: | Metallopeptidase M24 family protein
| chr1:3003919-3008213 FORWARD LENGTH=1626
Length=1626
Score = 2684 bits (1453), Expect = 0.0
Identities = 1557/1608 (97%), Gaps = 4/1608 (0%)
Strand=Plus/Plus
Query 1 ATACGAGGTCCGATTCGATCCTCTCAAGAGTCTGCGAGTCTGTGAGAGGAAAGAGATGCA 60
||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 8 ATACGAGGTCCAATTCGATCCTCTCAAGAGTCTGCGAGTCTGTGAGGGGGAAGAGATGCA 67
Query 61 GGTACTTGCGCGGAATCTAGTTCGGAGAGTATCAAGAACTCAGGTCGTCAGTCGTAATGC 120
| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 68 GTTTCTTGCGCGGAATCTAGTTCGGAGAGTATCGAGAACTCAGGTCGTTAGTCGAAATGC 127
Query 121 GTATTCAACCCAAA-GGTTCAGAGACATTGGTCAGCCAACTCCAGCTTCTCATCCTCATT 179
||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 ATATTCAACCCAAACGG-TCAGAGACATTGGTCAGCCAACTCCAGCATCTCATCCTCATT 186
Query 180 TAATGGCAGAAGGAGAGGTCACACCAGGAATAAGAATTGAGGAATACATTGGTAGAAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TAATGGCAGAAGGAGAGGTCACACCAGGAATAAGAATTGAGGAATACATTGGTAGAAGGA 246
Query 240 AGAAACTTGTGGAGCTTCTTCCTGAGAACAGTTTAGCCATCATTTCTTCAGCCCCCGTGA 299
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 247 AGAAACTTGTGGAGCTTCTCCCTGAGAATAGTTTAGCCATCATTTCGTCAGCCCCCGTGA 306
Query 300 AGATGATGACTGACGTTGTTCCATATACGTTCCGACAAGAGGCTGATTATTTGTATCTAA 359
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 307 AGATGATGACTGACGTTGTTCCATATACGTTCAGACAAGATGCTGATTATTTGTATCTAA 366
Query 360 CTGGCTGCCAGCAACCAGGTGGTGTGGCTATTTTAAGTGAAGAACGCGGTTTATGCATGT 419
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 367 CTGGCTGCCAGCAACCAGGTGGTGTGGCTGTTTTAAGTGATGAACGCGGTTTATGCATGT 426
Query 420 TCATGCCGGAATCAACTCCTAAGGATATTGCTTGGCAAGGAGAAGTTGCTGGAGTTGATG 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 TCATGCCGGAATCAACTCCTAAGGATATTGCTTGGGAAGGAGAAGTTGCTGGAGTTGATG 486
Query 480 CAGCGTCCGAGGTCTTCAAGGCAGACCAAGCATATCCGATAAGCAAATTACCCGAGATTC 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 487 CAGCGTCCGAGGTCTTCAAGGCAGATCAAGCATATCCGATAAGCAAATTACCCGAGATTC 546
Query 540 TTTCAGACATGATAAGACATTCTTCAAAAGTGTTTCATAATGTTCAATCGGCCTCGCAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTCAGACATGATAAGACATTCTTCAAAAGTGTTTCATAATGTTCAATCGGCCTCGCAAA 606
Query 600 GATACACAAACTTGGATGAGTTTCAAAAGTCAGCATCTCTTGGCAAAGTGAAAACTCTTT 659
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 607 GATACACAAACTTGGATGACTTTCAAAATTCAGCATCTCTTGGCAAAGTGAAAACTCTTT 666
Query 660 CAAGTTTAACACATGAGCTGAGGTTAATTAAATCACCTGCAGAACTCAAATTGATGAGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAAGTTTAACACATGAGCTGAGGTTAATTAAATCACCTGCAGAACTCAAATTGATGAGAG 726
Query 720 ATTCTGCATCTATTGCTTGCCAGGGTCTTCTGAAAACAATGCTACATTCAAAAGGGTTTC 779
| |||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 727 AGTCTGCATCAATTGCGTGCCAGGGTCTTCTGAAAACAATGTTACATTCAAAGGGGTTTC 786
Query 780 CTGATGAAGGCATCTTATCAGCCCAAGTTGAATATGAGTGCCGGGTAAGAGGTGCTCAGC 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 787 CTGATGAAGGCATCTTATCAGCCCAGGTTGAATATGAGTGCCGGGTAAGAGGTGCTCAGC 846
Query 840 GAATGGCATTTAATCCTGTAGTCGGTGGCGGTTCAAATGCTAGTGTTATTCACTATTCAC 899
||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 847 GAATGGCGTTCAATCCTGTAGTCGGTGGTGGTTCAAATGCCAGTGTTATTCACTATTCAC 906
Query 900 GAAATGATCAGCGAATAAAAGATGGTGATCTTGTCTTGATGGACATGGGTTGTGAGTTAC 959
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAAATGATCAGCGTATTAAAGATGGTGATCTTGTCTTGATGGACATGGGTTGTGAGTTAC 966
Query 960 ATGGTTATGTTAGTGATCTTACTCGGACATGGCCACCTTGCGGAAAATTCAGTTCTCTTC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 ATGGTTATGTTAGTGATCTTACTCGGACATGGCCACCTTGCGGAAAATTCAGTTCTGTTC 1026
Query 1020 AGGAAGAGCTATATGATCTTATACTTCAGACAAACAAAGAATGCATAAAACAATGCAAGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGGAAGAGCTATATGATCTTATACTTCAGACAAACAAAGAATGCATAAAACAATGCAAGC 1086
Query 1080 CTGGTACAACCATCCGCCAACTAAATGCATATTCGACCGAGTTGCTGTGCGATGGACTGA 1139
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 1087 CTGGTACAACCATCCGCCAACTAAACACATATTCGACCGAGTTGTTGTGTGATGGACTGA 1146
Query 1140 TGAAGATGGGCATCCTGAAAAGTCGTAGACTGTATCACCAGCTGAATCCGACCTCCATAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TGAAGATGGGCATCCTGAAAAGTCGTAGACTGTATCACCAGCTGAATCCGACCTCCATAG 1206
Query 1200 GTCACTACCTTGGGATGGATGTGCATGATTCTTCTGCTGTAGGATATGACCGTCCTTTGC 1259
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1207 GCCACTACCTTGGGATGGATGTGCATGATTCTTCTGCTGTGGGATATGACCGTCCTTTGC 1266
Query 1260 AACCTGGTTTTGTGATTACGATTGAGCCAGGAGTCTACATTCCATCTTCATTCGACTGCC 1319
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1267 AACCTGGTTTTGTGATTACGATTGAGCCAGGAGTCTATATTCCATCTTCATTTGACTGCC 1326
Query 1320 CTGAAAGATTCCAAGGGATTGGGATAAGGATCGAGGATGACGTACTGATCACTGAGACGG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CTGAAAGATTCCAAGGGATTGGGATAAGGATCGAGGATGACGTACTGATCACTGAGACGG 1386
Query 1380 GCTACGAAGTGCTCACAGGGTCAATGCCTAAGGAGATCAAACACATAGAGACATTGTTGA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GCTACGAAGTGCTCACAGGGTCAATGCCTAAGGAGATCAAACACATAGAGACATTGTTGA 1446
Query 1440 ATAATCACTGCCATGATAACTCTGCGCGAAGCTTCGCCAGTTTCTCTTCGCAAGGTTAAA 1499
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1447 ATAATCACTGCCATGATAACTCTGCGCGAA-CTTCGCCAGTTTCTCTTTGCAAGGTTAAA 1505
Query 1500 GGCT-GCATACGAACTGTAACTCAAGACGATTGTTTTGAATTAAACATCATTGATAATAA 1558
|||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1506 GGCTTGCATACGAACCGTAACCCAAGAAGATTGTTTTGAATTAAACATCATTGATAATAA 1565
Query 1559 TTCAAACGTAAACTCCTGTTCCTTGCGTTTGACTCATAGAATGTTTCA 1606
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1566 TTCAAACGTAAACTCCTGTTCCTTGCGTTTGACTCATAGAATGTATCA 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5