BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471022
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09310.1 | Symbols: | Protein of unknown function, DUF538 |... 1312 0.0
> AT1G09310.1 | Symbols: | Protein of unknown function, DUF538
| chr1:3009055-3009880 FORWARD LENGTH=826
Length=826
Score = 1312 bits (710), Expect = 0.0
Identities = 792/830 (95%), Gaps = 12/830 (1%)
Strand=Plus/Plus
Query 1 ACACAACTTCAGTC-TTGAGACAAAGCTAAAACTAAAAACAAAGAAACAGAGATGGGTTT 59
|||||||||||| | || |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 6 ACACAACTTCAG-CTTTAAGAC--AGCTAAAACTAAATACAAAGAAACAGAGATGGGTTT 62
Query 60 GGTTACAGAGGAGGTGAGAGCTAAGGCAGAGATGTACACCGGAGATGAGATATGCAGAGA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 63 GGTTACAGAGGAGGTGAGAGCTAAGGCAGAGATGTACACCGGAGATGAGATATGTAGAGA 122
Query 120 GAAGACAAAGTGTTTCCTCAAGGAAATATCTATGCCCAATGGCTTATTACCATTGAAGGA 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 123 GAAGACAAAGTGTTTCCTCAAGGAAATATCTATGCCCAATGGTTTATTACCATTGAAGGA 182
Query 180 TATAGAAGAGGTTGGGTATGACAGAGAGTCAGGTGTTGTATGGCTGAAGCAGAAGAAGAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TATAGAAGAGGTTGGGTATGACAGAGAGTCAGGTGTTGTATGGCTGAAGCAGAAGAAGAG 242
Query 240 CATCACTCACAAGTTCACAGAGATCGATAAGCTTGTCTCCTATGGAACCGAGGTCACTGC 299
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 243 CATCACTCACAAGTTCACAGAGATAGATAAGCTTGTCTCCTATGGAACCGAAGTCACAGC 302
Query 300 CATTGTTGAGACCGGGAAAATCAAGAAACTCACTGGAGTCAAAGCCAAGGAGCTTCTTAT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 303 CATTGTTGAGACCGGGAAAATCAAGAAGCTCACTGGAGTCAAAGCCAAGGAACTTCTTAT 362
Query 360 TTGGGTCACTATCAATGAGATCTTTACTGAGGAACCCCCTACCAAGATCACGTTCAAGAC 419
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 363 TTGGGTCACTATCAATGAGATCTATACCGAGGAACCCCCTACCAAGATCACGTTCAAGAC 422
Query 420 ACCGACCACACTGTCCAGGACTTTCCCGGTCACAGCTTTTACAGTACCAGAAGAAGAACC 479
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 423 ACCGACCACACTGTCCAGGACTTTCCCGGTCACAGCTTTTATAGT-CC--CAGAAGAACC 479
Query 480 TGCCAAGGAGGAACCTGCCAAAGAGGAACCTGCCAAGGAGAAGAGCAGCGAAGCCACCGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCCAAGGAGGAACCTGCCAAAGAGGAACCTGCCAAGGAGAAGAGCAGCGAAGCCACCGA 539
Query 540 GGCCAAGGAGGCTGTTGCAATCAAGGAAGCTGTCGCAGTCAAAGAGGCGGCCTAATCAAG 599
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 540 GGCCAAGGAGGCTGTTGCAATCAAGGAGGCTGTCGCAGTCAAAGAGGCGGCCTAATCA-G 598
Query 600 CCTCTGCTTCAGCA-ATTAAAAGAGACCCGAATTTTTAAGTGTACTTCAAGAATTTGAAC 658
| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 C-TCAGCTTCAGCAGAT-AAAAGAGACCCGAATTTTTAAGTGTACTTCAAGAATTTGAAC 656
Query 659 AAATCATGGAGGGTTAGTGTTTCTCACTGCTCTTACTATCATGTATTAT-TACCTATCAC 717
||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 657 AAATCATGGAGAGTTAGTGTTTCTCACTGCTCTAACTATCATGTATTATCTACCTACCAC 716
Query 718 TTGTTGCTGCTTGTTTTACCTGTAATAAGATATCAAAATCATCCTGTTCCACTAAAAATT 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 717 TTGTTGCTGCTTGTTTTACCTGTAATAAGATATCAATATCATCCTGTTCCACTAAAACTT 776
Query 778 ATCCGTAGTTATCTATAAACTACATTAAAGCTGGTTCCGTATGTAACTTC 827
|||| || |||||||||||||||| || ||||||||| |||||| |||||
Sbjct 777 ATCCTTAATTATCTATAAACTACAATACAGCTGGTTCTGTATGTCACTTC 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5