BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471023 Length=1976 Score E Sequences producing significant alignments: (Bits) Value AT1G09320.1 | Symbols: | agenet domain-containing protein | ch... 2870 0.0 > AT1G09320.1 | Symbols: | agenet domain-containing protein | chr1:3009941-3012363 REVERSE LENGTH=2018 Length=2018 Score = 2870 bits (1554), Expect = 0.0 Identities = 1866/2009 (93%), Gaps = 52/2009 (3%) Strand=Plus/Plus Query 1 AAATCAAACCCCAAAACCCTAAAAAGGTGA----TTTCTTTGA-TCTTCACTACCAATTC 55 |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||| Sbjct 29 AAATCAAACCCCAAAACCCTAAAAAGCTGATTCCTTTCTTTGATTC-TCACTACCAATTC 87 Query 56 TTCCCGCCAGTTTCCTTTCCCCGATTCGTCCTTGACACTCT-CAACGCCATGTCTTTGCG 114 ||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||| Sbjct 88 TTCCCGCCAGTTTCCTTTCCCCGATTCATCCTTGACACT-TGCAACGCCATG---TTGCG 143 Query 115 TTTGCGGTCTCGGCCACGCCAATCTCTTGGTATCTCATCTCCGGCGAAGCAGAGGAAGAA 174 || ||| | | || ||||||||| | |||||||||||||||||||||||||| Sbjct 144 ---GC---CTC-G-C-CG---ATCTCTTGGGGTTTCATCTCCGGCGAAGCAGAGGAAGAA 191 Query 175 A---GCTCCTACGAATTCCATGGCTACGAGAGCCAATCGAAAGCGTCTGCCTTCTTACCT 231 | ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 192 AGCTGCTCCTAAGAATTCCATGGCTACGAGAGCGAATCGAAAGCGTCTCCCTTCTTACCT 251 Query 232 AAAACCTGGCGCCACCGTGGAAATCAGCTCCGACGAGATTGGGTTCCGCGGCTCGTGGTA 291 ||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 252 CAAACCTGGCTCCGCCGTAGAAATCAGCTCCGACGAGATTGGATTCCGCGGCTCGTGGTA 311 Query 292 CCTGGGAAAAGTGATCACCACT-CCA---TCCTCACATAAGGATTCCCTTAAATGCCAAG 347 | |||||||||| ||||||| | ||| |||||| ||||||||||| |||||||||||| Sbjct 312 CATGGGAAAAGTAATCACCA-TCCCATCTTCCTCAGATAAGGATTCCGTTAAATGCCAAG 370 Query 348 TCGAGTACACGACGCTCTTCTTCGACAAAGAGGGGACGAAGCCTCTGAAGGAAGTTGTCG 407 ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 371 TCGAGTATACGACGCTCTTCTTCGATAAAGAGGGGACGAAGCCACTGAAGGAAGTTGTCG 430 Query 408 ACATGAGTCAGCTTCGTCCTCCGGCGCCGCCAATGTCTGAGAGAGAGAAGAAGAAGGATA 467 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | | Sbjct 431 ACATGAGTCAGCTTCGTCCTCCGGCCCCGCCAATGTCTGAGATAGAGAAGAAGAAGAAGA 490 Query 468 TCGCCGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 527 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 TCGTGGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 550 Query 528 CGGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTCAGGAGTTCTAAGGAGCAGATTC 587 | ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 551 CTGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTTAGGAGCTCTAAGGAACAGATTC 610 Query 588 GCTTTAGGAAAGATGAGCTACGGTTTCACAGGGAATGGCTTGATGGAGCTTGGAAGCCGC 647 | ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| | Sbjct 611 GGTTTAGGAAAGATGAGTTACGGTTTCATAGGGAATGGGTTGATGGAGCTTGGAAGCCTC 670 Query 648 CATTAGAGGAAAC---TG-A-A-GAAGACGAATCAGAGGAAGACAAATTAGACGACTCAG 701 ||||||||||||| | | | ||||| ||||||||||||||||||||||||||||||| Sbjct 671 CATTAGAGGAAACAGAAGAAGAGGAAGATGAATCAGAGGAAGACAAATTAGACGACTCAG 730 Query 702 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTGGAAACTACCAGAGCAATCGCGAAAG 761 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 731 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTAGAAACTACCAGAGCAATCGCGAAAC 790 Query 762 AAATGTTTTCCAGTGGCAC-GATTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 820 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 791 AAATGTTTTCCAGTGGCACTG-TTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 849 Query 821 TGTTGGTTTGCTGCTAAAGTCGTTGAACCCATTGGCGAAGACAAATTCCTTGTTGAGTAC 880 ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||| Sbjct 850 TGTTGGTTTGCAGCTAAAGTTGTTGAACCCGTTGGCGAAGACAAATTTCTTGTTGAGTAC 909 Query 881 CGTGACTTGAGAGAAAAAGATGGCATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 940 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 910 CGAGACTTGAGAGAAAAAGATGGTATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 969 Query 941 ATAAGGCCGCCACCACCAAGAGATGAGGATATAGATTTTTCTGTTGGGGACAAGATTAAT 1000 |||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||| Sbjct 970 ATAAGGCCGCCACCACCAAGGGATGAGGATATTGATTTTGCTGTTGGTGACAAGATTAAT 1029 Query 1001 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGCATGAAGGATGGAACA 1060 |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1030 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGTATGAAGCATGGAACG 1089 Query 1061 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCTGTTTGGAAGGCAGGGGCTTCGT 1120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1090 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCGGTTTGGAAGGCAGGGGCTTCGT 1149 Query 1121 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1209 Query 1181 AGGGAAAAGACTGTTTTATGTAATCGGAACGTGAGACCCAAGAAAGCAACGGAGAAGCAA 1240 |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1210 AGGGAAAAGACTGTTTCATGTAACCGGAACGTGAGACCCAAGAAAGCAACTGAGAAGCAA 1269 Query 1241 GCATTCAGCATTGGAACTCCGGTCGAGGTTAGCCCTGAGGAAGAAGGGTTTGAAGATTCT 1300 || |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1270 GCGTTCAGCATTGGAACTCCGATCGAGGTTAGCCCTGAGGAAGAAGGATTTGAAGATTCT 1329 Query 1301 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1389 Query 1361 AAACTGAAAGCTGAAGATGGGAAAGAACCTTTGAGAGAAGAGGTTAATGTTTCACAGATA 1420 || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1390 AATCTGAAAGCTGAAGATGGGAAAGAGCCTTTGAGAGAAGAGGTTAATGTTTCACGGATA 1449 Query 1421 AGGCCTCAACCACTAGAGAGTGTCATGGTTAGTCCATTCGAGAGGCATGACAAAGTTAAT 1480 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1450 AGGCCTCTGCCACTAGAGAGTGTCATGGTTAGTCCATTTGAGAGGCATGACAAAGTTAAT 1509 Query 1481 GCTTTGTATAATGATGGATGGTGGGTCGGGGTGATTAGGAAGGTTCTTGCAAAGTCATCT 1540 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1510 GCTTTGTATAATGATGGATGGTGGGTTGGGGTGATTAGAAAGGTTCTTGCAAAGTCATCT 1569 Query 1541 TACCTGGTTCTCTTTGAAAATACTCAAGAGATGCTAAGATTTCATCACTCTCAACTAAGG 1600 ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1570 TACCTGGTTCTCTTTAAAAATACTCAAGAGCTGCTAAAATTTCATCACTCTCAACTAAGG 1629 Query 1601 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1630 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1689 Query 1661 ATGGGCTGGATAACTCGTCAGGATTTTGGGATCTCAAGTTTTGTTTTTCTTTGAGGTACT 1720 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1690 ATGGGCTGGATAACTCGTCAGGATTTTGGGATTTCAAGTTTTGTTTTTCTTTGAGGTACT 1749 Query 1721 TGTATCTCTTAGTC--TTA-----A-CCCTGATGTTCCCTTGCTATTGTAGATAATTGCA 1772 |||||||||||||| ||| | ||||| |||||||||||||||||||||||||||| Sbjct 1750 TGTATCTCTTAGTCAGTTAGTCTTAACCCTGGTGTTCCCTTGCTATTGTAGATAATTGCA 1809 Query 1773 GAAATGATGATTGACTAAGATGCAACAACCAGTTGATATTT-ATTGTTGTTCCATGACAT 1831 | ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1810 GTTATGATGAGTGACTAAGATGCAACAACCAGTTGATATTTTATTCTTGTTCCATGACAT 1869 Query 1832 ACTGCGGTTCTCAATGCTCCTCATTTCTGTTGATTATTTGATAAACAAGTTTTTGCTGTA 1891 | |||| |||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1870 AGTGCGATTCTCATTGCTCCTGATTTCGGTTGATTATTTGATAGACAAGTTTTTGCTGTA 1929 Query 1892 AGGCTACTTCTTTGCCTTATTGGTTATCC-T---ATTGTCAAATATTTTTTGAAAAAGGT 1947 | ||||||| ||||||| ||| |||||| | |||||||||||||||| |||| |||| Sbjct 1930 ACACTACTTCCTTGCCTTGTTGATTATCCATCCTATTGTCAAATATTTTTCGAAAGAGGT 1989 Query 1948 AGGTCATATTACCTACGAAATTTAGCATC 1976 ||| ||||||||||||||| ||||||||| Sbjct 1990 AGGCCATATTACCTACGAAGTTTAGCATC 2018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97891062750 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5