BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471023
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09320.1 | Symbols: | agenet domain-containing protein | ch... 2870 0.0
> AT1G09320.1 | Symbols: | agenet domain-containing protein |
chr1:3009941-3012363 REVERSE LENGTH=2018
Length=2018
Score = 2870 bits (1554), Expect = 0.0
Identities = 1866/2009 (93%), Gaps = 52/2009 (3%)
Strand=Plus/Plus
Query 1 AAATCAAACCCCAAAACCCTAAAAAGGTGA----TTTCTTTGA-TCTTCACTACCAATTC 55
|||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||
Sbjct 29 AAATCAAACCCCAAAACCCTAAAAAGCTGATTCCTTTCTTTGATTC-TCACTACCAATTC 87
Query 56 TTCCCGCCAGTTTCCTTTCCCCGATTCGTCCTTGACACTCT-CAACGCCATGTCTTTGCG 114
||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||
Sbjct 88 TTCCCGCCAGTTTCCTTTCCCCGATTCATCCTTGACACT-TGCAACGCCATG---TTGCG 143
Query 115 TTTGCGGTCTCGGCCACGCCAATCTCTTGGTATCTCATCTCCGGCGAAGCAGAGGAAGAA 174
|| ||| | | || ||||||||| | ||||||||||||||||||||||||||
Sbjct 144 ---GC---CTC-G-C-CG---ATCTCTTGGGGTTTCATCTCCGGCGAAGCAGAGGAAGAA 191
Query 175 A---GCTCCTACGAATTCCATGGCTACGAGAGCCAATCGAAAGCGTCTGCCTTCTTACCT 231
| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 192 AGCTGCTCCTAAGAATTCCATGGCTACGAGAGCGAATCGAAAGCGTCTCCCTTCTTACCT 251
Query 232 AAAACCTGGCGCCACCGTGGAAATCAGCTCCGACGAGATTGGGTTCCGCGGCTCGTGGTA 291
||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 252 CAAACCTGGCTCCGCCGTAGAAATCAGCTCCGACGAGATTGGATTCCGCGGCTCGTGGTA 311
Query 292 CCTGGGAAAAGTGATCACCACT-CCA---TCCTCACATAAGGATTCCCTTAAATGCCAAG 347
| |||||||||| ||||||| | ||| |||||| ||||||||||| ||||||||||||
Sbjct 312 CATGGGAAAAGTAATCACCA-TCCCATCTTCCTCAGATAAGGATTCCGTTAAATGCCAAG 370
Query 348 TCGAGTACACGACGCTCTTCTTCGACAAAGAGGGGACGAAGCCTCTGAAGGAAGTTGTCG 407
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 371 TCGAGTATACGACGCTCTTCTTCGATAAAGAGGGGACGAAGCCACTGAAGGAAGTTGTCG 430
Query 408 ACATGAGTCAGCTTCGTCCTCCGGCGCCGCCAATGTCTGAGAGAGAGAAGAAGAAGGATA 467
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 431 ACATGAGTCAGCTTCGTCCTCCGGCCCCGCCAATGTCTGAGATAGAGAAGAAGAAGAAGA 490
Query 468 TCGCCGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 527
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TCGTGGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 550
Query 528 CGGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTCAGGAGTTCTAAGGAGCAGATTC 587
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 551 CTGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTTAGGAGCTCTAAGGAACAGATTC 610
Query 588 GCTTTAGGAAAGATGAGCTACGGTTTCACAGGGAATGGCTTGATGGAGCTTGGAAGCCGC 647
| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 611 GGTTTAGGAAAGATGAGTTACGGTTTCATAGGGAATGGGTTGATGGAGCTTGGAAGCCTC 670
Query 648 CATTAGAGGAAAC---TG-A-A-GAAGACGAATCAGAGGAAGACAAATTAGACGACTCAG 701
||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||
Sbjct 671 CATTAGAGGAAACAGAAGAAGAGGAAGATGAATCAGAGGAAGACAAATTAGACGACTCAG 730
Query 702 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTGGAAACTACCAGAGCAATCGCGAAAG 761
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTAGAAACTACCAGAGCAATCGCGAAAC 790
Query 762 AAATGTTTTCCAGTGGCAC-GATTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 820
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAATGTTTTCCAGTGGCACTG-TTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 849
Query 821 TGTTGGTTTGCTGCTAAAGTCGTTGAACCCATTGGCGAAGACAAATTCCTTGTTGAGTAC 880
||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 850 TGTTGGTTTGCAGCTAAAGTTGTTGAACCCGTTGGCGAAGACAAATTTCTTGTTGAGTAC 909
Query 881 CGTGACTTGAGAGAAAAAGATGGCATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 940
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 910 CGAGACTTGAGAGAAAAAGATGGTATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 969
Query 941 ATAAGGCCGCCACCACCAAGAGATGAGGATATAGATTTTTCTGTTGGGGACAAGATTAAT 1000
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 970 ATAAGGCCGCCACCACCAAGGGATGAGGATATTGATTTTGCTGTTGGTGACAAGATTAAT 1029
Query 1001 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGCATGAAGGATGGAACA 1060
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1030 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGTATGAAGCATGGAACG 1089
Query 1061 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCTGTTTGGAAGGCAGGGGCTTCGT 1120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1090 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCGGTTTGGAAGGCAGGGGCTTCGT 1149
Query 1121 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1209
Query 1181 AGGGAAAAGACTGTTTTATGTAATCGGAACGTGAGACCCAAGAAAGCAACGGAGAAGCAA 1240
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1210 AGGGAAAAGACTGTTTCATGTAACCGGAACGTGAGACCCAAGAAAGCAACTGAGAAGCAA 1269
Query 1241 GCATTCAGCATTGGAACTCCGGTCGAGGTTAGCCCTGAGGAAGAAGGGTTTGAAGATTCT 1300
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1270 GCGTTCAGCATTGGAACTCCGATCGAGGTTAGCCCTGAGGAAGAAGGATTTGAAGATTCT 1329
Query 1301 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1389
Query 1361 AAACTGAAAGCTGAAGATGGGAAAGAACCTTTGAGAGAAGAGGTTAATGTTTCACAGATA 1420
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1390 AATCTGAAAGCTGAAGATGGGAAAGAGCCTTTGAGAGAAGAGGTTAATGTTTCACGGATA 1449
Query 1421 AGGCCTCAACCACTAGAGAGTGTCATGGTTAGTCCATTCGAGAGGCATGACAAAGTTAAT 1480
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1450 AGGCCTCTGCCACTAGAGAGTGTCATGGTTAGTCCATTTGAGAGGCATGACAAAGTTAAT 1509
Query 1481 GCTTTGTATAATGATGGATGGTGGGTCGGGGTGATTAGGAAGGTTCTTGCAAAGTCATCT 1540
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1510 GCTTTGTATAATGATGGATGGTGGGTTGGGGTGATTAGAAAGGTTCTTGCAAAGTCATCT 1569
Query 1541 TACCTGGTTCTCTTTGAAAATACTCAAGAGATGCTAAGATTTCATCACTCTCAACTAAGG 1600
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1570 TACCTGGTTCTCTTTAAAAATACTCAAGAGCTGCTAAAATTTCATCACTCTCAACTAAGG 1629
Query 1601 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1689
Query 1661 ATGGGCTGGATAACTCGTCAGGATTTTGGGATCTCAAGTTTTGTTTTTCTTTGAGGTACT 1720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1690 ATGGGCTGGATAACTCGTCAGGATTTTGGGATTTCAAGTTTTGTTTTTCTTTGAGGTACT 1749
Query 1721 TGTATCTCTTAGTC--TTA-----A-CCCTGATGTTCCCTTGCTATTGTAGATAATTGCA 1772
|||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1750 TGTATCTCTTAGTCAGTTAGTCTTAACCCTGGTGTTCCCTTGCTATTGTAGATAATTGCA 1809
Query 1773 GAAATGATGATTGACTAAGATGCAACAACCAGTTGATATTT-ATTGTTGTTCCATGACAT 1831
| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1810 GTTATGATGAGTGACTAAGATGCAACAACCAGTTGATATTTTATTCTTGTTCCATGACAT 1869
Query 1832 ACTGCGGTTCTCAATGCTCCTCATTTCTGTTGATTATTTGATAAACAAGTTTTTGCTGTA 1891
| |||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1870 AGTGCGATTCTCATTGCTCCTGATTTCGGTTGATTATTTGATAGACAAGTTTTTGCTGTA 1929
Query 1892 AGGCTACTTCTTTGCCTTATTGGTTATCC-T---ATTGTCAAATATTTTTTGAAAAAGGT 1947
| ||||||| ||||||| ||| |||||| | |||||||||||||||| |||| ||||
Sbjct 1930 ACACTACTTCCTTGCCTTGTTGATTATCCATCCTATTGTCAAATATTTTTCGAAAGAGGT 1989
Query 1948 AGGTCATATTACCTACGAAATTTAGCATC 1976
||| ||||||||||||||| |||||||||
Sbjct 1990 AGGCCATATTACCTACGAAGTTTAGCATC 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891062750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5