BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471024
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1362 0.0
> AT1G09330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins
in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink). | chr1:3012762-3015091 REVERSE LENGTH=990
Length=990
Score = 1362 bits (737), Expect = 0.0
Identities = 913/989 (92%), Gaps = 47/989 (5%)
Strand=Plus/Plus
Query 1 AGAAGAAATCACGTAGCAGACACGCGCAAGAGTTTTGAAGATCTGATACAGAAA---ATT 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 10 AGAAGAAATCACGTAGCAGACACGCGCAAGAGTTTTGAAGATCTGATACAGAAATTTTTT 69
Query 58 -TC------A--GAGAGGGAAGATCG--A---T----AA--G-G-AGGTGTTTTGTTTCT 95
|| | ||||||||||||| | | || | | |||||||| ||||||
Sbjct 70 CTCGGGAAAATTCAGAGGGAAGATCGATACTTTCCACAACGGAGAAGGTGTTTCGTTTCT 129
Query 96 GCTGATCAGCAGATTACTTGTTCGTTTTT-TC-G---GA---TTTTGGATTCTTCGAAAG 147
||||||||||||||||||| ||| ||||| || | || ||||||||||||||||||
Sbjct 130 GCTGATCAGCAGATTACTTCTTC-TTTTTCTCGGATTGATCCTTTTGGATTCTTCGAAAG 188
Query 148 ATGGACCCTAATAATCAGATACAGGCACCAGTTGAAAATTATGCAAACCCAAGGACATGC 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 ATGGACCCTAATAATCAGATACAGGCACCAGTTGAAAATTATGCAAACCCAAGGACATGT 248
Query 208 CTTTTCCATGTTCTCTTCAAGGGTGCTGCGTTGGCGTTCTACATTCTCTCTGCGCTCTTC 267
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 249 CTTTTCCATGTTCTCTTCAAGGGTGCTGCGTTGGCGTTTTACATTCTCTCTGCTCTCTTC 308
Query 268 TTTAACAGCTTTGTCATCATCTTTGTAGTGACTGTTCTTCTTGCTGCCCTTGACTTCTGG 327
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 309 TTCAACAGCTTTGTCATCATCTTTGTAGTCACTGTTCTTCTTGCTGCTCTTGACTTCTGG 368
Query 328 GTGGTTAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAATGAGATCAAT 387
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 369 GTGGTTAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAACGAGATCAAT 428
Query 388 GACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGACCAGGAGTCCTTGGCTCGGATG 447
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 429 GACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGATCAGGAGTCTTTGGCTCGGATG 488
Query 448 AACAAGAAAGACTCGTGGCTTTTCTGGTGGACGCTTTACCTTGCAGCAGCTGCATGGTTT 507
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 489 AACAAGAAAGACTCATGGCTTTTCTGGTGGACACTTTACCTTGCAGCAGCTGCATGGTTT 548
Query 508 ATCCTTGGGGTATTTTCTCTGATTAGATTTCAAGCTGACTATCTGCTTGTTGTTGGCGTT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 ATCCTTGGGGTATTTTCTCTGATTAGATTTCAAGCTGACTATCTGCTTGTTGTTGGCGTT 608
Query 568 TGCTTGTCCCTCAACGTGGCTAATATCATCGGCTTCACAAAGTGCAAGAAAGATGCAAAG 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGCTTGTCCCTCAATGTGGCTAATATCATCGGCTTCACAAAGTGCAAGAAAGATGCAAAG 668
Query 628 AAACAATTTCAGCAGTTTGCCTCGCAGACAATCGCATCAAGGTTCCAATCAACAGTACAA 687
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 669 AAACAATTTCAGCAGTTTGCTTCGCAGACAATCGCATCACGGTTCCAATCAACAGTACAA 728
Query 688 TCTGCTTTCACCCTTGTCTGAAGAGAAGAAATACAGCTTTTT--AAGGGTTGTGAGAGCA 745
||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||||||
Sbjct 729 TCTGCCTTCACCCTTGTCTGAAGAGAAGAAAGAC-GCTTTTTTTAAGGGCTGTGAGAGCA 787
Query 746 AAGAAAGACAGTGTACAAAGAAGATTGCCTAAACGACATGGTTGGtttttttGACTGATT 805
|||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 788 AAGAC-G---GTGTACAAAGAAGATTGCCAAAACGACATGGTTGGTTTTTT-GACTGATT 842
Query 806 GGTTTCAAATGTTTTGTAAGGGTTTAAGAGGTCCTATATTCGTCTTTATATGTATTTTAC 865
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 843 GGTTTCAAATGTTTTGTAAGA-TTTAAGAGGTCCTATATTCGTCTTTCTATGTATTTTAC 901
Query 866 AATTTCGACTTACCTATTAACATTTTGCATCTCGTATGGTCTTCTTATTATACATATATT 925
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 902 ATTTTCGACTTACCTATTAACATTTTGCATCTCGTATGGTCTT---ATTATACGTATATT 958
Query 926 TAGCCCGAAAGAAAATTCAGAAATTTTAA 954
||||| |||||||| |||||||||||||
Sbjct 959 -AGCCCTAAAGAAAAATCAGAAATTTTAA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5