BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471025
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bi... 2281 0.0
> AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA
binding | chr1:3015328-3018234 FORWARD LENGTH=1481
Length=1481
Score = 2281 bits (1235), Expect = 0.0
Identities = 1386/1456 (95%), Gaps = 21/1456 (1%)
Strand=Plus/Plus
Query 1 AGATAATTATCTTATCCCTTCAAAAATTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAATTGTCTTATCCCTTCAAAATTTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60
Query 61 TGAGGTCCCACGAACCATACACAGATACTCACACACTTCAATTTCAAATAAGACCTTTTC 120
||||||||||||||| || | | | ||||||||||||||||||||||| ||||||
Sbjct 61 CGAGGTCCCACGAACC--AC-C----A-T-ACACACTTCAATTTCAAATAAGAGCTTTTC 111
Query 121 TTCAGTTGTTGCTCAGAGAGTGAACCAACAACAACCATGGCGAAGATGATGATGTTGCAA 180
||||||||||||||||||| | |||| | | |||||||||||||||||||||||||||||
Sbjct 112 TTCAGTTGTTGCTCAGAGACTTAACC-A-ATCAACCATGGCGAAGATGATGATGTTGCAA 169
Query 181 CAGCATCAGCcttctttctctcttcttacttcttctctctctGACTTCAATGGCGCTAAG 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 170 CAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAG 229
Query 241 CGCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CTCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 289
Query 301 TCAGCATCTAGCGAAAAGAAGATTCTGATAATGGGTGGCACTCGATTCATTGGTGTGTTC 360
||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 290 TCAGCGTCGAGCGAAAAGAAGATTCTGATAATGGGTGGTACTCGATTCATTGGTCTGTTC 349
Query 361 TTGTCCAGGCTCCTTGTCAAAGAAGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 420
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 350 TTGTCCAGGATCCTTGTCAAAGAGGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 409
Query 421 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTTTCTTCTAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 410 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG 469
Query 481 ATTCTTCACTTGAAAGGAGATAGAAAGGACTATGACTTTGTGAAATCAAGTCTTTCAGCA 540
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 470 ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCA 529
Query 541 GAAGGCTTCGATGTCGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCTATA 600
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 530 GAAGGCTTCGATGTTGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCCATA 589
Query 601 ATAGATGCACTGCCCAAACTAGAGCAGTACATCTATTGTTCTTCAGCTGGTGTTTATCTG 660
|||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 590 CTAGAAGCACTACCCAAACTAGAGCAGTACATCTACTGTTCTTCAGCTGGTGTTTATCTG 649
Query 661 AAATCTGATATCTTACCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAATCTGATATCTTGCCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 709
Query 721 GGGAAGCTAGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAATTGGACTTCTATACGT 780
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 710 GGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGT 769
Query 781 CCTGTCTACATCTATGGTCCATTGAACTACAACCCCGTCGAAGAATGGTTCTTCCACCGT 840
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 770 CCTGTCTACATCTACGGTCCATTGAATTACAACCCCGTCGAAGAATGGTTTTTCCACCGT 829
Query 841 CTAAAAGCCGGCCGCCCAATCCCAGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 900
||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 830 CTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 889
Query 901 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 949
Query 961 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1009
Query 1021 GCAAAGGCTGGTGGGTTTCCAGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1080
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCAAAGGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1069
Query 1081 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTGGAGAAA 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1070 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTGGAGAAA 1129
Query 1141 GCAAAGCATGTCCTCGGATGGAAACCAGAGTTCGACTTAGTGGAGGGTCTCACGGACTCA 1200
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1130 GCAAAGCATGTCCTCGGATGGAAACCGGAGTTCGACTTAGTGGAGGGTCTCACTGACTCA 1189
Query 1201 TACAACCTTGATTTCGGTCGCGGAACATTCCGAAAAGAAGCGGATTTCACCACTGACGAC 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1190 TACAACCTTGATTTCGGTCGCGGAACATTCCGGAAAGAAGCGGATTTCACCACTGACGAC 1249
Query 1261 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATC-AA-TCCTAAGAAATATAAACATTC 1318
||||||||||||||||||||||||||||||||||| || |||||||| | | |||||
Sbjct 1250 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATCGAAATCCTAAGAG-T-TGCTCATTC 1307
Query 1319 TTGGGTTGTATGATTCTGATCACGCGGTTCTCTTAAAGTTCTAAACTTTATTGTCATCTC 1378
|||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1308 TTGGCTTGTATGATTCTGATCACCCGGTTCTCTTAAAGTTCTGAACTTTATTGTCATCTC 1367
Query 1379 ACGTTCACGTGTGTTATGGTTCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1438
|||| | ||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1368 ACGT--A--TGT-T-ATGGTCCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1421
Query 1439 GGACGATGAAGAAACC 1454
||||||||||||||||
Sbjct 1422 GGACGATGAAGAAACC 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71686378260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5