BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471028

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09370.1 | Symbols:  | Plant invertase/pectin methylesterase...   821    0.0  


> AT1G09370.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:3024896-3025435 FORWARD 
LENGTH=540
Length=540

 Score =  821 bits (444),  Expect = 0.0
 Identities = 509/541 (94%), Gaps = 2/541 (0%)
 Strand=Plus/Plus

Query  1    TGAAAATGCATCGCATTCTCTCGATAGTTTTGGCGATTATACTCGCTTTCTCGGTTGCAG  60
            |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct  1    TGAAAATGCATCACATTCTCTCGATAGTTTTGGCAATTATACTCGCTTCCTCCGTTGCAG  60

Query  61   AAGCTTTTCTCGATGAAAAAACTCAACAAATGGTCAACGGAATCTGCAAACAGACAACGG  120
            |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct  61   AAGCTTTTCTCGATGAAAAAACTCAACAAAGGGTCAACGGAATCTGCAAGCAGACAATGG  120

Query  121  ATACCAAATTTTGCAGTAGTGTCTTGCTCAAGAACCTGAATACTCTTCCCGCAAGTAACA  180
            |||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct  121  ATACCAGATTTTGCAGTAGTCTCTTGATCAAGAACCTGAATACTTTTCCCGCAAGTAACA  180

Query  181  AAGATATCATGAACGTGACAGTAAGCGAAGCTGAAAGATTCGCGGCCAACACTTATTTCT  240
            |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  181  AAGAAATCATGAACGTGACAGTAAGCGAAGCTGAAAGGTTCGCGGCCAACACTTATTTCT  240

Query  241  TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG  300

Query  301  AAGCTTACGCTATTGTGAACTCGGCGTTCACGAATGCTGTATCTTTCTTCAAGCAAGCTT  360
            |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct  301  AAGCTTACGCCATTGTGAACTCGGCGTTCACGAAAGCTGTAACCTTCTTCAAGCAAGCTT  360

Query  361  ACTACAATAAGATCGTCAAGATCGAAAAGAAAGTTTCTACGGCTGTTGATATCTGTAAGA  420
            |||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  361  ACTACAGTAAGATTGTCAATATCGAAAAGAAAGTTTCTATGGCTGTTGATATCTGTAAGA  420

Query  421  CAGATTTCTATGTGCCCGGTTATAAGATCAATCCGCTTG-TTGAGAGAAACAGACAGACG  479
            |||||||| |||||| ||||||| ||||||||||| ||| |||||| |||||||||||||
Sbjct  421  CAGATTTCAATGTGCTCGGTTATCAGATCAATCCG-TTGATTGAGAAAAACAGACAGACG  479

Query  480  AAGATCTTAGTATCGATGGAAAAGATTGTTAGTCATATGGTTTCTTCATAATATGTTTGT  539
            ||||||||| |||| |||||| |||||||||||||||||||||||||||||| || ||||
Sbjct  480  AAGATCTTACTATCCATGGAACAGATTGTTAGTCATATGGTTTCTTCATAATCTGATTGT  539

Query  540  T  540
            |
Sbjct  540  T  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5