BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471032 Length=1788 Score E Sequences producing significant alignments: (Bits) Value AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 896 0.0 AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 99.0 1e-19 > AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:3035443-3037560 FORWARD LENGTH=2118 Length=2118 Score = 896 bits (485), Expect = 0.0 Identities = 537/562 (96%), Gaps = 4/562 (1%) Strand=Plus/Plus Query 683 AAAGGAGAGATAGCAAAAGCAAGGAGGG-TTTTGATTCAATGAAGGAGAGAAATGATGCA 741 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 832 AAAGGAGAGATAGCAAAAGCAAGAAGGGTTTTTGATTCAATGAAGGAGAGAAATGATGCA 891 Query 742 ACTTGGCAAATGGTAATCAAATTTCACGAAAGAAACGGTTTTGAATTGGAGGCTCTTGAT 801 ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 892 TCTTGGCAAACGGTGATCAAAATTCACGAAAGAAACGGTTTTGAATTGGAGGCTCTTGAT 951 Query 802 TTATTTGTTCTGATGCAGAAACAGGGAGTTAGACCGACTTTTCCAACATTGATCAGCGTT 861 |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 952 TTATTTATTCTGATGCAGAAACAGGGAGTTAGACCCACTTTTCCAACATTGATAAGCATT 1011 Query 862 CTTTCGGTCTGCGCCAGCTTAGCAAGCCTCCACCATGGTAAACAGGTCCATGCTCAGTTG 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 CTTTCGGTCTGCGCCAGCTTAGCAAGCCTCCACCATGGTAAACAGGTCCATGCTCAGTTG 1071 Query 922 GTTAGATGTCAATTTGATGTTGATTTGTATGTTGCGTCTGTTTTGATGACAATGTACATT 981 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1072 GTTAGATGTCAATTTGATGTTGATGTGTATGTTGCGTCTGTTTTAATGACAATGTACATT 1131 Query 982 AAATGCGGCGAGCTTTTGAAGTCGAAACTAATATTTGACAGGTTTCCTTCAAAGGACATT 1041 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1132 AAATGCGGCGAGCTTGTGAAGTCTAAACTAATATTTGACAGGTTTCCTTCAAAGGACATT 1191 Query 1042 ATCATGTGGAACTCAATCATATCTGGTTATGCCTCACACAGTCTAGGAGAGGAAGC-TCT 1100 ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | | Sbjct 1192 ATCATGTGGAATTCAATCATATCTGGTTATGCCTCACACGGTCTTGGAGAGGAAGCAT-T 1250 Query 1101 AAAGATTTTCTATGAGATGCCTTTGTCTGGTAGTACTGAGCCTAACGAAGTCACCTTCGT 1160 |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1251 AAAGGTTTTCTGTGAGATGCCTTTGTCTGGTAGTACTAAGCCTAACGAAGTCACCTTCGT 1310 Query 1161 TGCAACTCTCTCAGCATGTAGCTACGCTGGGATGGTTGAGGAAGGGCTTAAGATCTTTGA 1220 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1311 TGCAACTCTCTCAGCATGTAGTTACGCTGGGATGGTTGAGGAAGGGCTTAAGATCTATGA 1370 Query 1221 ATCTATGGAATCAGTTTT-GGG 1241 |||||||||||||||||| ||| Sbjct 1371 ATCTATGGAATCAGTTTTTGGG 1392 Score = 438 bits (237), Expect = 7e-122 Identities = 253/261 (97%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 419 ATATTGCAAGGACTAGTATGATTCATGGATTGTGCAAAGAAGGAAGAGTGGATGAGGCAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 ATATTGCAAGGACTAGTATGATTCATGGATTGTGCAAAGAAGGAAGAGTGGATGAGGCAA 574 Query 479 GGGAGATTTTTGATGAGATGTCAGAGAGAAGTGTGATTACTTGGACTACAATGGTCACAG 538 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 GAGAGATTTTTGATGAGATGTCAGAGAGAAGTGTGATTACTTGGACTACAATGGTCACAG 634 Query 539 GATATGGTCGGAACAGCCGTGTGGATGATGCTAGGAAGATTTTTGACGTGATGCCAGAGA 598 ||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 635 GATATGGGCAGAACAATCGTGTGGATGATGCTAGGAAGATTTTTGATGTGATGCCAGAGA 694 Query 599 AAACTGAAGTTTCATGGACTTCCATGCTTATGGGCTATGTACAAAATGGACGAATTGAGG 658 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 695 AAACTGAAGTTTCATGGACTTCCATGCTTATGGGCTATGTACAGAATGGGCGAATTGAGG 754 Query 659 ATGCTGAAGAACTTTTTGAAG 679 ||||||||||||||||||||| Sbjct 755 ATGCTGAAGAACTTTTTGAAG 775 Score = 294 bits (159), Expect = 2e-78 Identities = 208/229 (91%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 1237 TTGGGACGTGCAGGGCGGTTTAATGAGGCAATGGAAATGATTGATAGTATGACTGTCGAA 1296 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 TTGGG-CGTGCAGGACGGTTTAATGAGGCAATGGAAATGATTGATAGTATGACTGTCGAA 1494 Query 1297 CCAGATGCTGCAGTTTGGGGTTCTCTATTGGGAGCGTGCAGAACTCACTCGCAGCTGGAT 1356 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1495 CCAGATGCTGCAGTTTGGGGTTCTCTATTAGGAGCGTGCAGAACTCACTCGCAGCTGGAT 1554 Query 1357 TTGGCAGAATTTTGTGCAAAGAAACTCATAGAGATTGAAACGGAGAATTCTGG--CT--C 1412 |||||||||||||||| ||||||||||||||||||||| ||||||||||||| || | Sbjct 1555 GTGGCAGAATTTTGTGCGAAGAAACTCATAGAGATTGAACCGGAGAATTCTGGGACTTAC 1614 Query 1413 -TC---C-----AACATTTATGCATCTCAAGGTAGGTGGGCTGATGTTG 1452 || | ||||| |||||||||||||||||||||||||| |||| Sbjct 1615 ATCTTGCTCTCCAACATGTATGCATCTCAAGGTAGGTGGGCTGACGTTG 1663 Score = 274 bits (148), Expect = 2e-72 Identities = 182/199 (91%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1449 GTTGGTAAGAAAATCACCAGGCTGTAGCTGGAATGAAGTCAAGTTTAAAGTGCACGCGTT 1508 ||||||||||||||||||||| |||||||||| ||||||| || || ||||| || || Sbjct 1692 GTTGGTAAGAAAATCACCAGGTTGTAGCTGGACTGAAGTCGAGAACAAGGTGCATGCATT 1751 Query 1509 CACTCATGGGGGTATTTGTAGCCATCCCGAGCAGGAATCGATTTTGAAGTTATTGGATGA 1568 ||||| |||||||||| ||||||||||||||||||||| ||||||||| || ||||||| Sbjct 1752 CACTCGTGGGGGTATTAATAGCCATCCCGAGCAGGAATCTATTTTGAAGATACTGGATGA 1811 Query 1569 ATTGGATGGGTTATTGAGAGAAGCCGGGTATAATCCTGATTGCAGTTATGCATTGCACGA 1628 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1812 ATTGGATGGGTTATTGAGAGAAGCCGGGTATAATCCTGATTGCAGCTATGCATTGCACGA 1871 Query 1629 TGTAGACGAGGAAGGGAAA 1647 |||||||||||||| |||| Sbjct 1872 TGTAGACGAGGAAGAGAAA 1890 Score = 209 bits (113), Expect = 6e-53 Identities = 135/145 (93%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 1644 GAAAAACCTTAGAGTTTGTAGTGATATTTGCCGCGCAGCAATAAAAATAATCTCTAAGGT 1703 ||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||||| Sbjct 1977 GAAGAACCTTAGAGTTTGTAGTG--A-TTGCCACACAGCAATAAAAATAATCTCTAAGGT 2033 Query 1704 GAAAGAGATGGAGATCATTCTAAGAGATGCAAACAGATTCCGTCACTTCAGAAACGGAGA 1763 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2034 GAAAGAGAGGGAGATCATTCTAAGAGATGCAAACAGATTCCATCACTTCAGAAACGGAGA 2093 Query 1764 GTGTTCCTGTACAGATTATTGGTGA 1788 ||||||||||| |||||| |||||| Sbjct 2094 GTGTTCCTGTAAAGATTACTGGTGA 2118 Score = 91.6 bits (49), Expect = 2e-17 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 342 GGTTGATGTGGCAGAGTCGTTGTTTTGGAAAATGCCTGAGAAGAATAAG 390 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 GGTTGATGTGGCAGAGTCGTTGTTTTGGAAAATGCCTGAGAAGAATAAG 423 > AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:21253817-21255931 FORWARD LENGTH=2115 Length=2115 Score = 99.0 bits (53), Expect = 1e-19 Identities = 117/147 (80%), Gaps = 7/147 (5%) Strand=Plus/Plus Query 1644 GAAAAACCTTAGAGTTTGTAGTGATATTTGCCGCGCAGCAATAAAAATAATCTCTAAGGT 1703 ||| ||||||||||| ||| | || | ||| | || || || ||| | || ||||| || Sbjct 1974 GAAGAACCTTAGAGTCTGT-G-GAGA-TTGTCATGCCGCCATTAAACTCATTTCTAAAGT 2030 Query 1704 GAAAGAGATG-GAGATCATTCTAAGAGATGCAAACAGATTCCGTCACTTCAGA-AACGGA 1761 | ||| | | ||||||||||||||||||||||||||||||| ||| |||| | || ||| Sbjct 2031 CACAGA-AAGAGAGATCATTCTAAGAGATGCAAACAGATTCCATCATTTCA-ACAATGGA 2088 Query 1762 GAGTGTTCCTGTACAGATTATTGGTGA 1788 |||||||| |||| ||| || |||||| Sbjct 2089 GAGTGTTCTTGTAGAGACTACTGGTGA 2115 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88453360290 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5