BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471032
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 896 0.0
AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 99.0 1e-19
> AT1G09410.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:3035443-3037560 FORWARD LENGTH=2118
Length=2118
Score = 896 bits (485), Expect = 0.0
Identities = 537/562 (96%), Gaps = 4/562 (1%)
Strand=Plus/Plus
Query 683 AAAGGAGAGATAGCAAAAGCAAGGAGGG-TTTTGATTCAATGAAGGAGAGAAATGATGCA 741
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 832 AAAGGAGAGATAGCAAAAGCAAGAAGGGTTTTTGATTCAATGAAGGAGAGAAATGATGCA 891
Query 742 ACTTGGCAAATGGTAATCAAATTTCACGAAAGAAACGGTTTTGAATTGGAGGCTCTTGAT 801
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 892 TCTTGGCAAACGGTGATCAAAATTCACGAAAGAAACGGTTTTGAATTGGAGGCTCTTGAT 951
Query 802 TTATTTGTTCTGATGCAGAAACAGGGAGTTAGACCGACTTTTCCAACATTGATCAGCGTT 861
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 952 TTATTTATTCTGATGCAGAAACAGGGAGTTAGACCCACTTTTCCAACATTGATAAGCATT 1011
Query 862 CTTTCGGTCTGCGCCAGCTTAGCAAGCCTCCACCATGGTAAACAGGTCCATGCTCAGTTG 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTTTCGGTCTGCGCCAGCTTAGCAAGCCTCCACCATGGTAAACAGGTCCATGCTCAGTTG 1071
Query 922 GTTAGATGTCAATTTGATGTTGATTTGTATGTTGCGTCTGTTTTGATGACAATGTACATT 981
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1072 GTTAGATGTCAATTTGATGTTGATGTGTATGTTGCGTCTGTTTTAATGACAATGTACATT 1131
Query 982 AAATGCGGCGAGCTTTTGAAGTCGAAACTAATATTTGACAGGTTTCCTTCAAAGGACATT 1041
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1132 AAATGCGGCGAGCTTGTGAAGTCTAAACTAATATTTGACAGGTTTCCTTCAAAGGACATT 1191
Query 1042 ATCATGTGGAACTCAATCATATCTGGTTATGCCTCACACAGTCTAGGAGAGGAAGC-TCT 1100
||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 1192 ATCATGTGGAATTCAATCATATCTGGTTATGCCTCACACGGTCTTGGAGAGGAAGCAT-T 1250
Query 1101 AAAGATTTTCTATGAGATGCCTTTGTCTGGTAGTACTGAGCCTAACGAAGTCACCTTCGT 1160
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1251 AAAGGTTTTCTGTGAGATGCCTTTGTCTGGTAGTACTAAGCCTAACGAAGTCACCTTCGT 1310
Query 1161 TGCAACTCTCTCAGCATGTAGCTACGCTGGGATGGTTGAGGAAGGGCTTAAGATCTTTGA 1220
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1311 TGCAACTCTCTCAGCATGTAGTTACGCTGGGATGGTTGAGGAAGGGCTTAAGATCTATGA 1370
Query 1221 ATCTATGGAATCAGTTTT-GGG 1241
|||||||||||||||||| |||
Sbjct 1371 ATCTATGGAATCAGTTTTTGGG 1392
Score = 438 bits (237), Expect = 7e-122
Identities = 253/261 (97%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 419 ATATTGCAAGGACTAGTATGATTCATGGATTGTGCAAAGAAGGAAGAGTGGATGAGGCAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATATTGCAAGGACTAGTATGATTCATGGATTGTGCAAAGAAGGAAGAGTGGATGAGGCAA 574
Query 479 GGGAGATTTTTGATGAGATGTCAGAGAGAAGTGTGATTACTTGGACTACAATGGTCACAG 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GAGAGATTTTTGATGAGATGTCAGAGAGAAGTGTGATTACTTGGACTACAATGGTCACAG 634
Query 539 GATATGGTCGGAACAGCCGTGTGGATGATGCTAGGAAGATTTTTGACGTGATGCCAGAGA 598
||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 635 GATATGGGCAGAACAATCGTGTGGATGATGCTAGGAAGATTTTTGATGTGATGCCAGAGA 694
Query 599 AAACTGAAGTTTCATGGACTTCCATGCTTATGGGCTATGTACAAAATGGACGAATTGAGG 658
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 695 AAACTGAAGTTTCATGGACTTCCATGCTTATGGGCTATGTACAGAATGGGCGAATTGAGG 754
Query 659 ATGCTGAAGAACTTTTTGAAG 679
|||||||||||||||||||||
Sbjct 755 ATGCTGAAGAACTTTTTGAAG 775
Score = 294 bits (159), Expect = 2e-78
Identities = 208/229 (91%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 1237 TTGGGACGTGCAGGGCGGTTTAATGAGGCAATGGAAATGATTGATAGTATGACTGTCGAA 1296
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TTGGG-CGTGCAGGACGGTTTAATGAGGCAATGGAAATGATTGATAGTATGACTGTCGAA 1494
Query 1297 CCAGATGCTGCAGTTTGGGGTTCTCTATTGGGAGCGTGCAGAACTCACTCGCAGCTGGAT 1356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1495 CCAGATGCTGCAGTTTGGGGTTCTCTATTAGGAGCGTGCAGAACTCACTCGCAGCTGGAT 1554
Query 1357 TTGGCAGAATTTTGTGCAAAGAAACTCATAGAGATTGAAACGGAGAATTCTGG--CT--C 1412
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
Sbjct 1555 GTGGCAGAATTTTGTGCGAAGAAACTCATAGAGATTGAACCGGAGAATTCTGGGACTTAC 1614
Query 1413 -TC---C-----AACATTTATGCATCTCAAGGTAGGTGGGCTGATGTTG 1452
|| | ||||| |||||||||||||||||||||||||| ||||
Sbjct 1615 ATCTTGCTCTCCAACATGTATGCATCTCAAGGTAGGTGGGCTGACGTTG 1663
Score = 274 bits (148), Expect = 2e-72
Identities = 182/199 (91%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1449 GTTGGTAAGAAAATCACCAGGCTGTAGCTGGAATGAAGTCAAGTTTAAAGTGCACGCGTT 1508
||||||||||||||||||||| |||||||||| ||||||| || || ||||| || ||
Sbjct 1692 GTTGGTAAGAAAATCACCAGGTTGTAGCTGGACTGAAGTCGAGAACAAGGTGCATGCATT 1751
Query 1509 CACTCATGGGGGTATTTGTAGCCATCCCGAGCAGGAATCGATTTTGAAGTTATTGGATGA 1568
||||| |||||||||| ||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1752 CACTCGTGGGGGTATTAATAGCCATCCCGAGCAGGAATCTATTTTGAAGATACTGGATGA 1811
Query 1569 ATTGGATGGGTTATTGAGAGAAGCCGGGTATAATCCTGATTGCAGTTATGCATTGCACGA 1628
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1812 ATTGGATGGGTTATTGAGAGAAGCCGGGTATAATCCTGATTGCAGCTATGCATTGCACGA 1871
Query 1629 TGTAGACGAGGAAGGGAAA 1647
|||||||||||||| ||||
Sbjct 1872 TGTAGACGAGGAAGAGAAA 1890
Score = 209 bits (113), Expect = 6e-53
Identities = 135/145 (93%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 1644 GAAAAACCTTAGAGTTTGTAGTGATATTTGCCGCGCAGCAATAAAAATAATCTCTAAGGT 1703
||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 1977 GAAGAACCTTAGAGTTTGTAGTG--A-TTGCCACACAGCAATAAAAATAATCTCTAAGGT 2033
Query 1704 GAAAGAGATGGAGATCATTCTAAGAGATGCAAACAGATTCCGTCACTTCAGAAACGGAGA 1763
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2034 GAAAGAGAGGGAGATCATTCTAAGAGATGCAAACAGATTCCATCACTTCAGAAACGGAGA 2093
Query 1764 GTGTTCCTGTACAGATTATTGGTGA 1788
||||||||||| |||||| ||||||
Sbjct 2094 GTGTTCCTGTAAAGATTACTGGTGA 2118
Score = 91.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 342 GGTTGATGTGGCAGAGTCGTTGTTTTGGAAAATGCCTGAGAAGAATAAG 390
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGTTGATGTGGCAGAGTCGTTGTTTTGGAAAATGCCTGAGAAGAATAAG 423
> AT1G56690.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:21253817-21255931 FORWARD LENGTH=2115
Length=2115
Score = 99.0 bits (53), Expect = 1e-19
Identities = 117/147 (80%), Gaps = 7/147 (5%)
Strand=Plus/Plus
Query 1644 GAAAAACCTTAGAGTTTGTAGTGATATTTGCCGCGCAGCAATAAAAATAATCTCTAAGGT 1703
||| ||||||||||| ||| | || | ||| | || || || ||| | || ||||| ||
Sbjct 1974 GAAGAACCTTAGAGTCTGT-G-GAGA-TTGTCATGCCGCCATTAAACTCATTTCTAAAGT 2030
Query 1704 GAAAGAGATG-GAGATCATTCTAAGAGATGCAAACAGATTCCGTCACTTCAGA-AACGGA 1761
| ||| | | ||||||||||||||||||||||||||||||| ||| |||| | || |||
Sbjct 2031 CACAGA-AAGAGAGATCATTCTAAGAGATGCAAACAGATTCCATCATTTCA-ACAATGGA 2088
Query 1762 GAGTGTTCCTGTACAGATTATTGGTGA 1788
|||||||| |||| ||| || ||||||
Sbjct 2089 GAGTGTTCTTGTAGAGACTACTGGTGA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5