BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471033
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09415.1 | Symbols: NIMIN-3 | NIM1-interacting 3 | chr1:3037... 957 0.0
> AT1G09415.1 | Symbols: NIMIN-3 | NIM1-interacting 3 | chr1:3037754-3038408
REVERSE LENGTH=655
Length=655
Score = 957 bits (518), Expect = 0.0
Identities = 615/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 1 ATGTTGTTAGTCTTCCCACTAGAGGCAATAATTATATCTCCTCCACCAATTCCTGCAGAA 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTTGTTAGTCTTCCCACTAGAGGCAATAATTATATCTTCTCCACCAATTCCTCCAGAA 60
Query 61 AATTCTTCCAGATGTATCATGTGTTGATGATCAAAGTAGGATGAAAATGATGTAGCTAGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 61 AATTCTTCCAGATGTATCATGTGTTGATGATCAAAGTAGGATGAAAATGATGTAACTAAA 120
Query 121 GAGAAACATTTTCAAAGGGAAAGGAA-ACGAGAGTGGCTCAATGGATAGAGACAAAAAGA 179
|||||||||||||| |||| |||||| | ||||| || |||||||| ||||||| |||||
Sbjct 121 GAGAAACATTTTCATAGGGGAAGGAAGA-GAGAGCGGTTCAATGGACAGAGACAGAAAGA 179
Query 180 GGGTGAAAATGGATAAGGAAGATGACGAAGAAGAAAAGATGGAGAAGTTGTACACAGTGC 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGTGAAAATGGAGAAGGAAGATGACGAAGAAGAAAAGATGGAGAAGTTGTACACAGTGC 239
Query 240 TTAAAAACGCAAGGGAAATGCGGAAATACGTTATCAGCTCCATGGAGACGAAGAGACAGG 299
|||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 240 TTAAAAACGCAAGGGAAATGCGGAAATATGTCAACAGCTCCATGGAGAAGAAGAGACAGG 299
Query 300 AAGAAGAAGAAAGAGCAAGGATTCGTAGATTCCCTTCGTTTCAGCCAGAAGATTTCATTT 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAAGAAGAAAGAGCAAGGGTTCGTAGATTCCCTTCGTTTCAGCCAGAAGATTTCATTT 359
Query 360 TCATGAATAAAGCAGAGACCAACAACATTGAAAAAGCAGCTAATGAGAGCTCTTCAGCAT 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCATGAATAAAGCAGAGGCCAACAACATTGAAAAAGCAGCTAATGAGAGCTCTTCAGCAT 419
Query 420 CCAACGAGTATGATGGCTCTAAGGAAAAGCAAGACGGATCTGAGACTAACATTTGTTTAG 479
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 420 CCAACGAGTATGATGGCTCTAAGGAAAAGCAAGAAGGATCTGAGACTAACGTTTGTTTAG 479
Query 480 ACTTGAATCTTTCTCTGTAG--TA--TACG-A---GAGACAAAGAGCTCTTCAGTTTCTG 531
|||||||||||||||||||| || ||| | |||||||||||||||||||||||||
Sbjct 480 ACTTGAATCTTTCTCTGTAGCATACATACATACAAGAGACAAAGAGCTCTTCAGTTTCTG 539
Query 532 TACAAGCAACAAATAATGTTAGTAACTATGTATGTACCAAAAACAAATGTGACATGTAAT 591
|| |||||||||| |||||||||||||| ||| ||||||||||||||| |||| |||
Sbjct 540 TATAAGCAACAAAGAATGTTAGTAACTACGTA----CCAAAAACAAATGTGTCATGGAAT 595
Query 592 TCTAGTATTGCTTGAAGAGTGATCATCACTTCTTATTAACCAAATAGAAGGAAATGCTAC 651
|||||| ||||||||||| || |||||||||||||||||||| || |||| |||||||||
Sbjct 596 TCTAGTTTTGCTTGAAGATTGTTCATCACTTCTTATTAACCATATTGAAGAAAATGCTAC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5