BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471047
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09520.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 1238 0.0
> AT1G09520.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 12 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved
site (InterPro:IPR019786); BEST Arabidopsis thaliana protein
match is: PHD finger family protein (TAIR:AT3G17460.1); Has
56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria
- 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses -
0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3070946-3072050
REVERSE LENGTH=1105
Length=1105
Score = 1238 bits (670), Expect = 0.0
Identities = 971/1105 (88%), Gaps = 66/1105 (6%)
Strand=Plus/Plus
Query 1 AGACAGACACTATGAATCTCCCATCGTCAACGACGGCAACGTCAACCTCCGCTTCTTCCG 60
||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 10 AGAGAGACACTATGAATCTTCCATCGTCAACGACGGCGACGTCAACCTCCGCGACTTCCG 69
Query 61 ATGCAGCGGCGGATTCCACCGAGAGATGCGATGATTGCGGAAGCCT-AGACGCCTGGGTG 119
||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 70 ATGCAGCGGCGAATTCCACCGAAAGATGCGATGATTGCGGAAG-CTCAGACGCCTGGGTG 128
Query 120 ATACACACAGTAAAACTCCGTGGATCTCTCCGCTTCTTCTGCACACATTGCCTCCTCCGC 179
|||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 129 ATACACACAGTACGTCTCCGTGCATCTCTCCGCTTCTTCTGCACTCATTGTCTCCTCCGC 188
Query 180 AACCATCCGACGTCGTTTTGTCCCTCTTGCTTCGCCTTCTACGATTCATCTCCGCCGAAT 239
||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
Sbjct 189 AACCATCCGGCGTCGTTTTGTCCCGGTTGCTTCGCCTTGTACGATTCATCTCCGCCG--T 246
Query 240 ACTTTTCGCCGCGTCGCTTGCTCCAATTCCAA--GTGCCCCTCCTTGACTCACATTCATT 297
|||||||||||||| |||| ||| ||| || ||||| |||||||||||||||||| |
Sbjct 247 -CTTTTCGCCGCGTCTCTTGTTCC-ATT-AAAGGGTGCCACTCCTTGACTCACATTCACT 303
Query 298 GCGCCGGCGATGCAAA-TCCCCCTTCTTCTTATCTCTGTCCTCCTTGCCTGA-ACCCTAC 355
| |||||||||| ||| | | || | ||||||||||||||||||||||| || ||||||
Sbjct 304 GTGCCGGCGATG-AAAGT-CACC-T-TTCTTATCTCTGTCCTCCTTGCC-GAGACCCTAA 358
Query 356 TTCTTTCTCCTTCTTCCGCCCTATTGTCGACGCAAACGGCTCTCGCTCCGTCGATAAATC 415
||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |
Sbjct 359 TTCCTTCTCCTTCTTCCGCCCTATCGTCGACGAAAACGGCTCTCGCTTCGTCGATAAAGC 418
Query 416 TCTCTCCCAAGCTTTCTTATGCGCCGCTAAGATCGCTGCTTCTTCAATGAACAAAGCTGT 475
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 ACTCTCCGAAGCTTTCTTATGCGCTGCTAAGATCGCTGCTTCTTCAATGAACAAAGCTGT 478
Query 476 TATGGCCGCTAAATGTGATGCTGATCGGAGAGGAAGAGAAGCTGCTTTGGCGAAGAAGAG 535
|||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 479 TATGACCGCTAAGTGTGAAACTGACCGGAGAGGAAAAGAAGCTGCTTTGGCGAAGAAGAG 538
Query 536 AGCTCGCGAGGCTCTTGAGCATGTTGTCATGCTTGACGCCAAGGAGAAGGCAAGATCGGT 595
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 539 AGCTCGCGAGGCTCTTGAGCAGGTTGTCATGCTTGATGCCAAGGAGAAGGCAAGATCGGT 598
Query 596 TGTTCCAAAGCTGAAAGAAGCTTCCGTTGATCAGAAACCAAAACTCAGTCCTGCATCAAA 655
|||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 599 TGTTCCTAAGCTTAAAGAAGCTCCCGTTGATCAGAAACCAAAACTGAGTCCTGCATCAAA 658
Query 656 TGGTGATACTGTGAAAGAAACAGAGAGCTCTGCAACCactactactactactactactac 715
||||| |||||||||||||||||||||||||| | |||||||||||| |||| || ||
Sbjct 659 TGGTGCTACTGTGAAAGAAACAGAGAGCTCTG-AT--ACTACTACTACTCCTACGACGAC 715
Query 716 taatactacCAAGAACAATGGAGGCACAGAGAAACAGAATCCGGCAATGCAATTGGCTAA 775
|| |||| | |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 716 TACGACTA--A-GAACAATGGAGGTACAGAGAAACAGAATCCGGCAACACAATTGGCTAA 772
Query 776 AGTTAAGCAAGAAGCTGATGCCTCTAGAT-AA--CAAC-TTCAA-G---CA--T------ 819
||||||||||||||||||||| ||||| | || ||| || || | || |
Sbjct 773 AGTTAAGCAAGAAGCTGATGCGTCTAGGTGAAATCAATGTTTAAAGTTTCAGGTACCACA 832
Query 820 --TTC--G--T--C---TTCTGATGAAAGAAAGCTGATTCTGATTCGATCTCAATGTAGA 868
||| | | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 833 ACTTCAAGCATTTCGGCTTCTGATGAAAGAAA-CTGATTCTGATTCGATCTCAATGTAGA 891
Query 869 TTGTACGTTATCTCtttttttGTTTGTTCATGTTTTTCTGGATCGTTTACGCTATGTGTA 928
||||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct 892 TTGTAAGTTATC-CTTTTTTGGTTTGTTCATGTTTTTC-G-ATCGTTTAC--TATGTGTA 946
Query 929 GGAATCTCTGGAACTGTGAAGTGtttttttttttATAATAAATCATATGTTTCTGTGTCT 988
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 947 GGAATCTTTGGAACTGTGAAGTGTTTTTTTA---A-AATAAATCATATGTTTCTGTGTCT 1002
Query 989 G-ACTAAAGCCACACTGTGTAACATAGCCTGGTGATGGTTTTAGTTGCTGGT--T-GTTC 1044
|| ||||||||||||||||||||||||||||||||||||||||| | ||| | || |
Sbjct 1003 TTACAAAAGCCACACTGTGTAACATAGCCTGGTGATGGTTTTAGTTACCGGTGATCGTCC 1062
Query 1045 AAATTGTTGTGATGTGATTCTTGTT 1069
|| ||||||||||||||||||||
Sbjct 1063 AA---GTTGTGATGTGATTCTTGTT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5