BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471048
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacti... 2283 0.0
> AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3076582-3079539 FORWARD LENGTH=1957
Length=1957
Score = 2283 bits (1236), Expect = 0.0
Identities = 1545/1686 (92%), Gaps = 53/1686 (3%)
Strand=Plus/Plus
Query 199 AAGATTGTCTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCCAA 258
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 184 AAGATTGTTTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAA 243
Query 259 GCTAACCTCGAATCTGCTCAAGACAACAACCCTTCTCCACCTGTAGATGAAGTTGTGGAA 318
||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 244 GCTAAGCTTGAATCTGCTCAAGACAGGAACCCTTCTCCACCTGTAGATGAAGTTGTGGAG 303
Query 319 CTAGTGTGGGAAAACGGTCAGATTTCAACTCAGAGTCAGTCAAGCAGGTCGAGGAACATT 378
|| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 304 CTGGTGTGGGAAAATGGTCAGATATCAACTCAAAGTCAGTCAAGTAGATCGAGGAACATT 363
Query 379 CCTCCACCACAAGCAAACTCTTCTAGGGCTAGAGAGATTGGGAATGGCTCAAAGGCAACG 438
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||
Sbjct 364 CCTCCACCACAAGCAAACTCTTCTAGAGCTAGAGAGATTGGAAATGGCTCAAAGACGACT 423
Query 439 ATGGTGGATGAGATCCCTATGTCAGTGCCATCACTAATGACGGGTTTGAGTCAAGACGAT 498
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ATGGTGGACGAGATCCCTATGTCAGTGCCATCACTAATGACGGGTTTGAGTCAAGACGAT 483
Query 499 GACTTTGTTCCATGGTTGAATCATCATCCATCCCTCGATGGATATTGTTCTGATTTCTTG 558
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 484 GACTTTGTTCCATGGTTGAATCATCATCCCTCCCTTGATGGATATTGCTCTGATTTCTTG 543
Query 559 CGTGA--TGT-GTCTCCTGTTACTGTCAACGAGCAAGAGAGCGATATGGCGGTAAATCAA 615
||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 544 CGTGATGTGTCGTCTCCTGTTACTGTCAACGAGCAAGAGAGTGATATGGCGGTAAACCAA 603
Query 616 ACTGTTTTCCCGTTGTTTCAGAGAAGAAACAATGGCAATGAGTCAGCTTCTGCTGCTTCT 675
|||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 604 ACTGCTTTCCCGTTGTTTCAGAGAAGAAAGGATGGCAATGAATCAGCTCCTGCTGCTTCT 663
Query 676 TCATCGCAGTATAACGGTTTTCAATCTCAATCTGTGTATGGAAGTGATAGAGCTAGGGAT 735
|| ||||||||||||||||| ||||| || ||| |||||||||||||||||||||| |||
Sbjct 664 TCGTCGCAGTATAACGGTTTCCAATCGCATTCTCTGTATGGAAGTGATAGAGCTAGAGAT 723
Query 736 CCTGCTAGCCTACAAGCCAAACCGGATCAATTTACTCAGACGCAGGAACCACTAA-TCCT 794
| | |||||| |||| |||| ||||||| ||||||||||||||||||||||||| | |
Sbjct 724 CTTCCTAGCCAACAAACCAATCCGGATCGGTTTACTCAGACGCAGGAACCACTAATTAC- 782
Query 795 TAGTAACAAGCCCAGTTTGGTCAACTTTTCGCATTTCTTACGCCCTGCAACTTTGGCTAA 854
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 783 TAGTAACAAGCCTAGTTTGGTCAACTTTTCACATTTCTTACGCCCTGCAACTTTTGCGAA 842
Query 855 G---AC---TAATAACCCTCATGGCAGTAAAGAGAAGAGTCCTCAAAGCCCGCCGAATGT 908
| || |||||||| ||||| || |||||| |||||||||||||||||||| |||||
Sbjct 843 GACTACTAATAATAACCTTCATGACACTAAAGAAAAGAGTCCTCAAAGCCCGCCAAATGT 902
Query 909 GTTTCAGACCAGAGTTCTTGGAGCTAAGGACTCTGAAGATAAGGTTCTTAACGAGTCTGT 968
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 903 GTTTCAGACCAGAGTTCTTGGAGCTAAAGACTCTGAAGATAAGGTTCTTAACGAGTCTGT 962
Query 969 TGCTTCTGCTATGCCTAAGGATAACCAAAAGGCTTGCCTTATTA-CAGAGGACTCATGTA 1027
||||||||||| |||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 963 TGCTTCTGCTACGCCTAAAGATAACCAAAAGGCTTGCC-TAATATCAGAGGACTCATGTA 1021
Query 1028 GAAAAGACCAAGAGAGTGAAAAGGCAGTTGTGTGTTCTTCTGTTGGCTCGGGTAATAGTC 1087
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1022 GAAAAGACCAAGAGAGTGAAAAAGCAGTTGTATGTTCTTCTGTTGGCTCGGGTAATAGTC 1081
Query 1088 TTGATGGCCCATCCGAAAGTCCTTCACTTTCTTTAAAGAGAAAGCGTTCGGATATTCAAG 1147
| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1082 TCGATGGCCCATCCGAAAGTCCTTCACTTTCTTTAAAGAGAAAGCATTCGAATATTCAAG 1141
Query 1148 ACATTGACTGTCGTCATAGTGAAGATGTTGAAGAAGAATCAGGAGATGGAAGAAAGGAAG 1207
|||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 ACATTGAC--T-GTCATAGTGAAGATGTGGAAGAAGAATCAGGAGATGGAAGAAAGGAAG 1198
Query 1208 CAGGTCCTTCTCGAACGGGTTTGGGTTCAAAGAGAAGCCGCTCTGCAGAAGTGCATAATC 1267
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGGTCCATCTCGAACGGGTTTGGGTTCAAAGAGAAGCCGCTCTGCAGAAGTGCATAATC 1258
Query 1268 TGTCTGAAAGGAGACGGCGTGATAGGATCAACGAGAAGATGCGTGCCCTGCAAGAACTCA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTCTGAAAGGAGACGGCGTGATAGGATCAACGAGAAGATGCGTGCCCTGCAAGAACTCA 1318
Query 1328 TTCCAAACTGCAACAAGGTGGACAAAGCTTCGATGCTAGATGAAGCCATCGAGTATCTCA 1387
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTCCAAACTGTAACAAGGTGGACAAAGCTTCGATGCTAGATGAAGCCATCGAGTATCTCA 1378
Query 1388 AGTCCCTCCAACTTCAAGTACAGATTATGTCGATGGCGTCTGGTTACTA-CATGCCACCG 1446
|||| |||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 1379 AGTCACTCCAACTTCAAGTGCAGATCATGTCAATGGCGTCTGGTTACTATC-TGCCACCG 1437
Query 1447 G---TTATGTTCCCACATGGTATGGGGCACTACCCGGC------TGC---AATGGCAATA 1494
| |||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct 1438 GCGGTTATGTTCCCACCGGGTATGGGGCATTACCCGGCAGCAGCTGCTGCAATGGCAATG 1497
Query 1495 GGCATGGGAATGCCTTATGCAATGGGCTTGCCTGATTTAAGCCGGGGTGGATCATCGGTT 1554
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1498 GGTATGGGAATGCCTTATGCAATGGGCTTGCCTGATTTGAGCCGTGGTGGTTCATCGGTT 1557
Query 1555 AACCACGGACCACAGTTCCAAGTCTCGGGGTTGCAACAAC--C-AGTGGCGATGGCG-AT 1610
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 1558 AACCACGGACCACAGTTCCAAGTCTCGGGGATGCAACAACAACCAGTGGCGATGG-GTAT 1616
Query 1611 TCCACGTGTCTCTGGTGGTGGTTTCTTTGCAGAGT-CTTCAACGATGGAGATGAATAAGA 1669
|||||||||||||||||||||| ||||||| | || |||| ||||| || |
Sbjct 1617 TCCACGTGTCTCTGGTGGTGGTATCTTTGCCG-GTTCTTCGACGAT-----TG-----G- 1664
Query 1670 GCGACAATGGTTCGACTAGAGATTTATCGGGTTCTAAAGATCAAACAACGACGAATAACA 1729
| | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1665 -C-A-A-TGGCTCGACTAGAGATTTATCTGGTTCTAAAGATCAAACAACGACGAATAACA 1720
Query 1730 ACAGTAACTTGAAACCAATAAAGAGAAAACATGCGTCTTCTGATCAGTTTTGTGGATCGT 1789
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1721 ACAGTAACTTGAAACCAATAAAGAGAAAACAGGGGTCTTCTGATCAGTTTTGTGGATCGT 1780
Query 1790 CATGACATAAATACAAACTGAAGAACTGATGTATTGTTTATCTTGTAGCATTCAAACAAA 1849
| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 1781 CGTGACATAAATACAAACTTATGAACTGATGTATTGTTTAT-TTGTAGCATTCAAACAAA 1839
Query 1850 TCAATT 1855
|| |||
Sbjct 1840 TCTATT 1845
Score = 176 bits (95), Expect = 7e-43
Identities = 114/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 TCCGTCTTGTGCGTCGATTTGTCTCCATCTCC--CTCTCTCCGCCTACTTTCTCAAGATT 58
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 40 TCCGTCTTGTGCGTCGATTTGTCTCCATCTCCTTCTCTCTCCGCCTACTTTCTCAGGACT 99
Query 59 ACTCCAATTCGCCGTCTTCTTCTCCTCTGTTCTCTGCATTTGGATTGATGTCATTTTAGT 118
|||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||| |
Sbjct 100 ACTCCAATTCGCCGACTTTTTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAAT 159
Query 119 Act 121
|||
Sbjct 160 ACT 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93172211520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5