BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471056
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09580.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1230 0.0
> AT1G09580.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:3104588-3106290 FORWARD LENGTH=921
Length=921
Score = 1230 bits (666), Expect = 0.0
Identities = 782/836 (94%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 1 AAAGATCTGGCCACTTCAACACAACGATCGACGAATACAATCGGAAAATTTGAAATCTCG 60
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 7 AAAGATCTGGCCACCACAACACAACGATCGACGAATACAATAGGAAAATTTGAAATCTCG 66
Query 61 TCGACGAAGATGACTGCTAAGATTCGCCGTGTATTCCCGACGGCGTTCC-T-TC-TG--T 115
|||| |||||||||||||||||| ||||||| ||||||||||||||||| | || || |
Sbjct 67 TCGATGAAGATGACTGCTAAGATGCGCCGTGAATTCCCGACGGCGTTCCTTCTCTTGTTT 126
Query 116 -T-GTTTC--TG--G-TTCCGGTCGGTGAGGCGGTGTGGCTAGATGTGCCTCCCACCGGA 168
| ||| | || | |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 127 CTGGTTCCGGTGATGATTCCGGTCGGTGAGGCTGTATGGCTAGATGTGCCTCCCACCGGA 186
Query 169 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCCGATTACCTCATC 228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCTGATTACCTCATC 246
Query 229 ATCTCCGAGGATCACGACGTCATGCCCACTATTTCCGTCAAGGTGACGTCCCCGTATGGC 288
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 247 ATCTCCGAGGATCACGAGGTCATGCCCACTATATCCGTCAAGGTGACATCCCCATATGGC 306
Query 289 AACAATCTGCACAACATGGAAAATGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 348
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 AACAATCTGCACAATATGGAAAACGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 366
Query 349 TCCGGCAACTACTTGGCATGCTTTTGGGCTGATGCAAAGAGTCACGGAAACAAAAATGTT 408
|| || ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 367 TCAGGGAACTACTTGGCGTGCTTTTGGGCAGATGAAAAGAGTCACGGAAACAAAAATGTT 426
Query 409 AGCATCAACATTGACTGGAAAACTGGAATCGCTGCTAAGGATTGGGCCTCTGTTGCTAAG 468
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 427 AGCATCAACATTGACTGGAGAACTGGAATCGCTGCTAAGGATTGGGCCTCTATTGCTAAG 486
Query 469 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTAGAAGGCGCAGTGGAAGCC 528
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 487 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTCGAAGGCGCAGTCGAAGCC 546
Query 529 ATCCATGAAAATCTACTATACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 588
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATCCATGAAAATATACTCTACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 606
Query 589 AAAACGAACTCGCGGGTGGCTTGGTATAGTATAATGTCGCTAGGTGTTTGCATTGCTGTC 648
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 607 AAAACGAACTCGCGGGTGGCTTGGTACAGTATAATGTCACTAGGTGTTTGCATTGCTGTC 666
Query 649 TCTGGTTTACAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 708
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTGGTTTCCAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 726
Query 709 TTCACTGATATTCAGTTCCTTTAAAGAGAGTTTCCTCTTAAAGAATAATATTCAATTCAT 768
||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 727 TTCCCTGATATTCAGGTCCTTTAATGAGAGTTTCTTCTTAAAGAATAATATTCAATTCAT 786
Query 769 CTCCTTTCCTTCTTGTTTGTTTACACGCCTCCTATTTACTGACGCTGTAAAATTTT 824
|||||||| ||| | ||| ||||||||||| ||||||||||||||||||||||
Sbjct 787 CTCCTTTCTTTCCTCTTT----ACACGCCTCCTTTTTACTGACGCTGTAAAATTTT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5