BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471056 Length=870 Score E Sequences producing significant alignments: (Bits) Value AT1G09580.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1230 0.0 > AT1G09580.1 | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104588-3106290 FORWARD LENGTH=921 Length=921 Score = 1230 bits (666), Expect = 0.0 Identities = 782/836 (94%), Gaps = 16/836 (2%) Strand=Plus/Plus Query 1 AAAGATCTGGCCACTTCAACACAACGATCGACGAATACAATCGGAAAATTTGAAATCTCG 60 |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7 AAAGATCTGGCCACCACAACACAACGATCGACGAATACAATAGGAAAATTTGAAATCTCG 66 Query 61 TCGACGAAGATGACTGCTAAGATTCGCCGTGTATTCCCGACGGCGTTCC-T-TC-TG--T 115 |||| |||||||||||||||||| ||||||| ||||||||||||||||| | || || | Sbjct 67 TCGATGAAGATGACTGCTAAGATGCGCCGTGAATTCCCGACGGCGTTCCTTCTCTTGTTT 126 Query 116 -T-GTTTC--TG--G-TTCCGGTCGGTGAGGCGGTGTGGCTAGATGTGCCTCCCACCGGA 168 | ||| | || | |||||||||||||||| || |||||||||||||||||||||||| Sbjct 127 CTGGTTCCGGTGATGATTCCGGTCGGTGAGGCTGTATGGCTAGATGTGCCTCCCACCGGA 186 Query 169 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCCGATTACCTCATC 228 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 187 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCTGATTACCTCATC 246 Query 229 ATCTCCGAGGATCACGACGTCATGCCCACTATTTCCGTCAAGGTGACGTCCCCGTATGGC 288 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct 247 ATCTCCGAGGATCACGAGGTCATGCCCACTATATCCGTCAAGGTGACATCCCCATATGGC 306 Query 289 AACAATCTGCACAACATGGAAAATGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 348 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 307 AACAATCTGCACAATATGGAAAACGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 366 Query 349 TCCGGCAACTACTTGGCATGCTTTTGGGCTGATGCAAAGAGTCACGGAAACAAAAATGTT 408 || || ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| Sbjct 367 TCAGGGAACTACTTGGCGTGCTTTTGGGCAGATGAAAAGAGTCACGGAAACAAAAATGTT 426 Query 409 AGCATCAACATTGACTGGAAAACTGGAATCGCTGCTAAGGATTGGGCCTCTGTTGCTAAG 468 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 427 AGCATCAACATTGACTGGAGAACTGGAATCGCTGCTAAGGATTGGGCCTCTATTGCTAAG 486 Query 469 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTAGAAGGCGCAGTGGAAGCC 528 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 487 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTCGAAGGCGCAGTCGAAGCC 546 Query 529 ATCCATGAAAATCTACTATACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 588 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 547 ATCCATGAAAATATACTCTACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 606 Query 589 AAAACGAACTCGCGGGTGGCTTGGTATAGTATAATGTCGCTAGGTGTTTGCATTGCTGTC 648 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 607 AAAACGAACTCGCGGGTGGCTTGGTACAGTATAATGTCACTAGGTGTTTGCATTGCTGTC 666 Query 649 TCTGGTTTACAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 708 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 TCTGGTTTCCAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 726 Query 709 TTCACTGATATTCAGTTCCTTTAAAGAGAGTTTCCTCTTAAAGAATAATATTCAATTCAT 768 ||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 727 TTCCCTGATATTCAGGTCCTTTAATGAGAGTTTCTTCTTAAAGAATAATATTCAATTCAT 786 Query 769 CTCCTTTCCTTCTTGTTTGTTTACACGCCTCCTATTTACTGACGCTGTAAAATTTT 824 |||||||| ||| | ||| ||||||||||| |||||||||||||||||||||| Sbjct 787 CTCCTTTCTTTCCTCTTT----ACACGCCTCCTTTTTACTGACGCTGTAAAATTTT 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42447854215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5