BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471057
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09690.1 | Symbols: | Translation protein SH3-like family p... 872 0.0
AT1G09590.1 | Symbols: | Translation protein SH3-like family p... 869 0.0
AT1G57860.1 | Symbols: | Translation protein SH3-like family p... 599 1e-170
AT1G57660.1 | Symbols: | Translation protein SH3-like family p... 592 2e-168
AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21... 250 1e-65
> AT1G09690.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3136188-3137475 REVERSE LENGTH=759
Length=759
Score = 872 bits (472), Expect = 0.0
Identities = 496/508 (98%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 25 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 98
Query 85 ATTCAGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGA 144
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 99 ATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCGA 158
Query 145 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 218
Query 205 CGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAA 264
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 219 CGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAA 278
Query 265 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCA 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 279 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGCA 338
Query 325 ATCAAGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGC 384
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 339 ATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTGC 398
Query 385 AGCCAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGG 444
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGCCAAAGCCAATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGG 458
Query 445 ATTCATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTCAA 504
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 459 ATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTCAA 518
Query 505 CGATCTCAAAGGAGGCTATTAGTTCTAT 532
||||||||| ||||||||||||||||||
Sbjct 519 CGATCTCAAGGGAGGCTATTAGTTCTAT 546
> AT1G09590.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3106502-3107772 FORWARD LENGTH=708
Length=708
Score = 869 bits (470), Expect = 0.0
Identities = 517/540 (96%), Gaps = 1/540 (0%)
Strand=Plus/Plus
Query 1 CACATTTCGCATCCATCTAAGCGAAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAG 60
||||||||||| ||| | ||||| |||||||||||| || || ||||||||||| |||||
Sbjct 17 CACATTTCGCAACCACCAAAGCGGAGGAAAAATGCCGGCTGGACATGGAGTTCGAGCGAG 76
Query 61 AACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTATCGACTTA 120
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 77 AACGAGGGATCTGTTCGCGAGGCCTTTCAGGAAGAAGGGTTACATTCCTCTATCGACTTA 136
Query 121 CCTGAGGACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CCTGAGGACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAA 196
Query 181 GGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCG 240
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 197 GGGTATGCCTCACAAGTTCTACCATGGTCGTACTGGTCGTATCTGGAACGTCACCAAGCG 256
Query 241 CGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGATTCA 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 257 CGCCGTCGGTGTTGAAGTCAACAAACAGATTGGGAACAGGATCATAAGGAAGAGGATTCA 316
Query 301 TGTGCGTGTGGAGCATGTCCAGCAATCAAGATGTGCGGAGGAGTTCAAGCTGAGGAAGAA 360
||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 317 TGTTCGTGTGGAGCATGTGCAGCAGTCAAGATGTGCCGAGGAGTTCAAGCTGAGGAAGAA 376
Query 361 GAAGAACGATGAGCTCAAGGCTGCAGCCAAAGCCAAAGGTGAGACCATCAGCACCAAGAG 420
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 377 GAAAAACGATGAGCTCAAGGCTGCAGCCAAAGCCAATGGTGAGACCATCAGCACCAAGAG 436
Query 421 ACAGCCTAAAGGACCCAAACCAGGATTCATGGTTGAAGGAATGACCTTGGAGACTGTCAC 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 437 ACAGCCTAAAGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCAC 496
Query 481 TCCAATCCCTTACGATGTCGTCAACGATCTCAAAGGAGGCTATTAGTTCTATGTT-TTGT 539
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 497 TCCAATCCCCTACGATGTCGTCAACGATCTCAAAGGAGGCTATTAGTTCTATCTTCTTGT 556
Score = 108 bits (58), Expect = 8e-23
Identities = 79/88 (90%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 532 TGTTTTGTAGC-GACTCAAAACTAAGAA-TATTATTATGATTTATATAACAGGAGTTTGC 589
||||||||||| |||| ||||||||||| ||| ||| | | ||||||||||||||||||
Sbjct 578 TGTTTTGTAGCAGACTTAAAACTAAGAATTATGATT-T-A-CTATATAACAGGAGTTTGC 634
Query 590 AATCCAGATTTTGCAAGGATGGTTTATT 617
||||||||||||| ||||||||||||||
Sbjct 635 AATCCAGATTTTGTAAGGATGGTTTATT 662
> AT1G57860.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21429898-21430865 REVERSE LENGTH=669
Length=669
Score = 599 bits (324), Expect = 1e-170
Identities = 447/507 (88%), Gaps = 5/507 (1%)
Strand=Plus/Plus
Query 25 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 84
|||||||||||| ||||| || ||||| |||||||||| || |||||||||||||| ||
Sbjct 32 AGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACC 91
Query 85 ATTCAGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGA 144
|||||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 92 ATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGA 151
Query 145 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 204
|||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 152 TTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCA 211
Query 205 CGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAA 264
|||||||||||||| ||||||| ||||| || || ||||| |||||||||||||||||
Sbjct 212 TGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTCAACAA 271
Query 265 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCA 324
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 272 ACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACA 331
Query 325 ATCAAGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGA-AGAACGATGAGCTCAAGGCTG 383
||||| ||||| |||||||| || || || ||||| | ||||||||| ||| |||||||
Sbjct 332 GTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAA-ACAGAACGATGTGCTTAAGGCTG 390
Query 384 CA-GCCAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 442
| || ||||||| ||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 391 -ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCG 449
Query 443 GGATTCATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTC 502
|| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 450 GGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTC 509
Query 503 AACGATCTCAAAGGAGGCTATT-AGTT 528
||||||||||| || || |||| ||||
Sbjct 510 AACGATCTCAAGGGTGGTTATTGAGTT 536
> AT1G57660.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21355520-21356537 FORWARD LENGTH=715
Length=715
Score = 592 bits (320), Expect = 2e-168
Identities = 442/502 (88%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 29 AAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCCATTC 88
|||||||| ||||| || ||||| |||||||||| || |||||||||||||| ||||||
Sbjct 45 AAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTC 104
Query 89 AGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGATTAC 148
|||||||||||||| |||||||| || |||||||| || |||||||||||||||||||||
Sbjct 105 AGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTAC 164
Query 149 GTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCACGGT 208
|||||||| ||||| ||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct 165 GTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGT 224
Query 209 CGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAAACAG 268
||||||||||| ||||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 225 CGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAG 284
Query 269 ATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCAATCA 328
||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct 285 ATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCA 344
Query 329 AGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGCA-GC 387
|| ||||| |||||||| || || || |||||| ||||||||| ||| ||||||| | ||
Sbjct 345 AGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGC 403
Query 388 CAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGGATT 447
||||||| ||| ||||| |||||||||||||||||||||||||| || ||||| || ||
Sbjct 404 TAAAGCCAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTT 463
Query 448 CATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTCAACGA 507
|||||| ||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 464 CATGGTCGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGA 523
Query 508 TCTCAAAGGAGGCTATT-AGTT 528
|||||| || || |||| ||||
Sbjct 524 TCTCAAGGGTGGTTATTGAGTT 545
> AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21
(RPL21B), temporary automated functional assignment; blastp
match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630
60S ribosomal protein L21 {Oryza sativa}
| chr1:3062430-3063731 REVERSE LENGTH=1302
Length=1302
Score = 250 bits (135), Expect = 1e-65
Identities = 186/211 (88%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 59 AGAACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTATCGACT 118
||||| || |||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
Query 119 TACCTGAGGACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCAC 178
||||| | ||||||||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
Query 179 AAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTGTCTGGAA-CGTCACCAA 237
|||||||| ||||| ||||||||||| |||||| ||||||| ||||||| | |||| ||
Sbjct 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATC-TCACTAA 641
Query 238 GCGCGCCGTCGGTGTTGAAGTCAACAAACAG 268
||| ||||| |||||||||||||||||||||
Sbjct 642 GCGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5