BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471063
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09640.1 | Symbols: | Translation elongation factor EF1B, g... 2732 0.0
AT1G57720.1 | Symbols: | Translation elongation factor EF1B, g... 1452 0.0
> AT1G09640.1 | Symbols: | Translation elongation factor EF1B,
gamma chain | chr1:3119878-3122526 FORWARD LENGTH=1795
Length=1795
Score = 2732 bits (1479), Expect = 0.0
Identities = 1683/1779 (95%), Gaps = 24/1779 (1%)
Strand=Plus/Plus
Query 1 ATACAGATTTTAAAAACCCTA---CTTCATCAGCATCCCTTCAACACTCCTTTATAGCTT 57
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 4 ATACAGATTTTAAAAACCCTACTTCTTCATCATCATCCCTTCAACACTCCTTTATAGCTT 63
Query 58 TTCTCCGCCTC-ATTTTTTGTTTC-T-TCTCTCGATTTGCTCTCACGGAAGATT-TTGCA 113
||||||||||| | |||||| ||| | ||||||||||||||||||||||||||| || ||
Sbjct 64 TTCTCCGCCTCAACTTTTTGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTT-CA 122
Query 114 GAACATCTGATCCGATATCAGAAG-CCCAAGTTTACTTGAATTCCGTCTGAGCAATGGCT 172
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 123 GAATATCTGATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCT 182
Query 173 TTGGTCTTGCACACGTACAAGGGAAACAAAAGTGCTGATAAGGCACTCATTGTAGCAGAG 232
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 183 TTGGTCTTGCACACGTACAAGGGAAACAAAAGTGCTGAGAAGGCACTCATTGCAGCAGAG 242
Query 233 TACGTTGGTCTGCAGATCGATGTCCCCTCTGACTTTGAGATGGGTGTCACTAACAAAACC 292
||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 243 TACGTTGGTGTGCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACC 302
Query 293 CCTGAGTTCCTCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGA 352
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCTGCGTTCCTCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGT 362
Query 353 TCAGTATTTGAGAGCAACGCCATTGCCCGTTATGTAAGCCGATTGAACGGTGACAACTCT 412
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 363 TCAGTATTTGAAAGCAACGCAATTGCCCGTTATGTAAGCCGATTGAATGGTGACAACTCT 422
Query 413 TTGAACGGATCCTCCCTGATTGAATATGCACAAGTTGAGCAATGGAGCGACTTT-GCTTC 471
|||||||||||||||||||| |||||||||||| |||||||||||| || ||| ||||
Sbjct 423 TTGAACGGATCCTCCCTGATCGAATATGCACAAATTGAGCAATGGATTGA-TTTCTCTTC 481
Query 472 ATTGGAGATCTATGGAAACATCTTAAGGTGGTTTGGCCCAAGAATGGGCTTTATGCCATA 531
|||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 482 ATTGGAGATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATA 541
Query 532 CAGTGCTCCGGCTGAGGAAGGTACCATCTCTGCATTGAAGAGAGCACTTGATGCTCTGAA 591
||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||||
Sbjct 542 CAGTGCTCCGGCTGAAGAAGGTGCGATCTCTACGTTGAAGAGAGCACTTGATGCTCTGAA 601
Query 592 CACACATCTCGCTTCCAACACTTACCTTGTTGGACACTCTATTACCCTTGCTGATATTAT 651
|||||||||| | || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 602 CACACATCTCACGTCTAACACTTACCTTGTCGGACACTCTATTACCCTTGCTGATATCAT 661
Query 652 CACTGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CACTGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGA 721
Query 712 ATTCCCTCATGTTGAGCGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCAAGAAAGT 771
||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 722 ATTTCCTCATGTTGAGAGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCACTAAAGT 781
Query 772 GTTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTATTGCTTCCAAGAAAGCTGCCCA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTATTGCTTCCAAGAAAGCTGCCCA 841
Query 832 GCCTGCGAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAA 891
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GCCTGCAAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAA 901
Query 892 GCTTGCCGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACC 951
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCTTGCTGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACC 961
Query 952 ACCAAGCCCTATGGTACTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTT 1011
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 ACCAAGCCCTATGGTTCTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTT 1021
Query 1012 CCGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTTTG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 CCGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATG 1081
Query 1072 GTTCTGTGACTACAAGTACAACGATGAGAACATGGTATCATTTGTCACACTCAACAAGGT 1131
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1082 GTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGT 1141
Query 1132 GGGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGAT 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TGGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGAT 1201
Query 1192 TTGCGGGTCAGAGGGTCCGTTTAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGAT 1251
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTGTGGGTCAGAGGGTCCGTTCAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGAT 1261
Query 1252 CCCAAAGTTCATAATGGACGAGGTGTATGACATGGAGCTGTACGAGTGGACTAAGGTTGA 1311
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1262 CCCAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTATGAGTGGACTAAGGTTGA 1321
Query 1312 TATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATCGAAGATGCAGAGCCATT 1371
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1322 TATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATT 1381
Query 1372 TGAAGGTGAGGCTCTCTTGGATGCCAAGTGCTTCAAGTGAAAAGAGAGAATGGTTTGGTA 1431
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1382 TGAAGGTGAGGCTCTCTTGGACGCCAAGTGCTTCAAGTGAGAAGAGAGAATGGTTTGGTA 1441
Query 1432 CTTCCATTTACCGGTTTTGCAGCTGCTGGGGCTTTACATATCTTTCTATCTCTGTCTCTC 1491
||||||||||| ||||||||||||| ||| |||||||||||||||||||| | | ||||
Sbjct 1442 CTTCCATTTACAGGTTTTGCAGCTG--GGG-CTTTACATATCTTTCTATCTGTCTGTCTC 1498
Query 1492 CCATAGGGGTTTTGGTCTGTGACTTGTGTCGCATAGACTGTTTTT--CTTT-CTAATTGA 1548
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| ||
Sbjct 1499 ACATAGGGGTTTTGCTCTGTGAC--GTGTCGCATAGACTGTTTTTTTCTTTTCTAATCGA 1556
Query 1549 GTGTCAAGGACAAGTCTTTTTAGTTCTTTGTTAATGTTTCGCCTCTGTGCCAGAATTGTT 1608
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1557 GTGTCAAGGACAAGTCTTTTTAGTTCTTTGTTAATGTTTCGCCTCCGT-CCAGAATTGTT 1615
Query 1609 TAC-ATACCAGTTTTCGAAGTTCTGACCGGCCAGTCTACCCTGGCAATAGGCAATACATG 1667
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TACTATACCAGTTTTCGAAATCCTGACCGGCCAGTCTACCCTGGCAATAGGCAATACATG 1675
Query 1668 GTCTGGTTTATTTGTTTTACAGTAATTTTACCTTGGGTTTATTTGCTTCGACGCGTTTCG 1727
|||||||||||||||||||| |||||||| ||||| || |||| ||| |||||||||||
Sbjct 1676 GTCTGGTTTATTTGTTTTACGGTAATTTTGCCTTGA-TTGATTTTCTTTGACGCGTTTCG 1734
Query 1728 GTCAAATTATATATACATTGGTCTTTGAGTTGAACATTT 1766
||||| ||||||| ||||||||||||||||||||||||
Sbjct 1735 GTCAACTTATATA--CATTGGTCTTTGAGTTGAACATTT 1771
> AT1G57720.1 | Symbols: | Translation elongation factor EF1B,
gamma chain | chr1:21377615-21380378 FORWARD LENGTH=1661
Length=1661
Score = 1452 bits (786), Expect = 0.0
Identities = 1215/1414 (86%), Gaps = 62/1414 (4%)
Strand=Plus/Plus
Query 37 TTCAACACTCCTTTATAGCT-TTTCT--CCGCCTCATTTTTTGT-TTC-T-TCTCTCGAT 90
||| ||||| | | ||| || ||||| ||||| | |||| | | ||| | ||||||| |
Sbjct 15 TTCCACACT-C-TAATA-CTATTTCTCGCCGCCGC-TTTTGTATCTTCTTCTCTCTCGCT 70
Query 91 TTGCTCTCACGGAA--GATTTTGCAG-AA--CATCTGATCCGATA-TCAG--AAGC-CCA 141
|||||||| ||||| | |||||||| || | ||| ||| || | |||| || | ||
Sbjct 71 TTGCTCTCTCGGAATTGTTTTTGCAGAAAGTC-TCTCATCTGA-ACTCAGAAAATCTCCG 128
Query 142 AGTT--TACT-TGAAT-TCCGTCTGAGCAATGGCTTTGGTCTTGCACACGTACAAGGGAA 197
|||| || | | | ||||| ||||||||||| |||||| ||||||| ||||||||||
Sbjct 129 AGTTCGTA-TAT-CTTCTCCGTTTGAGCAATGGCGTTGGTCATGCACACATACAAGGGAA 186
Query 198 ACAAAAGTGCTGATAAGGCACTCATTG-TAGCAGAGTACGTTGGTCTGCAGATCGATGTC 256
||||| |||| |||||||||| |||| | |||||||| | ||| || ||||||| |
Sbjct 187 ACAAAGGTGCCAATAAGGCACTTATTGCT-GCAGAGTATGCGGGTGTGAAGATCGAGGAG 245
Query 257 CCCTCTGACTTTGAGATGGGTGTCACTAACAAAACCCCTGAGTTCCTCAAGATGAACCCT 316
|| | |||||| ||||||| ||||||||||| | ||||||||||| ||||||||||||
Sbjct 246 TCCGCAGACTTTCAGATGGGCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCT 305
Query 317 ATTGGAAAGGTTCCTGTACTTGAGACTCCCG-AGGGATCAGTATTTGAGAGCAACGCCAT 375
||||||||||||||||| ||||||||||| | ||| || ||||||||||||| |||||
Sbjct 306 ATTGGAAAGGTTCCTGTGCTTGAGACTCCTGAAGGTCCCA-TATTTGAGAGCAATGCCAT 364
Query 376 TGCCCGTTATGTAAGCCGAT-TGAACGGTGACAACTCTTTGAACGGATCCTCCCTGATTG 434
|||||| ||||| ||||| | ||| ||||||||||||||||| ||||||||||| ||||
Sbjct 365 TGCCCGATATGTGAGCCG-TAAGAATGGTGACAACTCTTTGAATGGATCCTCCCTTATTG 423
Query 435 AATATGCACA-AGTTGAGCAATGGAGCGACTTTGCT--TCATTGGAGATCT-ATGGAAAC 490
|||| || || | |||||||||||| ||| ||| || ||||||||||| | ||| |||
Sbjct 424 AATACGCTCACA-TTGAGCAATGGATCGA-TTT-CTCCTCATTGGAGAT-TGATGCTAAC 479
Query 491 ATCTT-AAGGTGGTTTGGC-CCAAGAATGGGCTTTATG--CCATACAGTGCTCCGGCTGA 546
|| || || ||||||| || |||||||||||| |||| || | | ||| || |||||
Sbjct 480 ATGTTGAA-GTGGTTT-GCTCCAAGAATGGGC--TATGCTCCCTTCTCTGCCCCAGCTGA 535
Query 547 GGAAG-GTACCATCTCTGCATTGAAGAGAGCACTTGATGCTCTGAACACACATCTCGCTT 605
||||| | | || |||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct 536 GGAAGCG-GCAATTTCTGCATTGAAGAGAGGACTTGAGGCTCTGAACACACATCTCGCCT 594
Query 606 CCAACACTTACCTTGTTGGACACTCTATTACCCTTGCTGATATTATCACTGTCTGCAACT 665
||||||||| |||||||||||||||| | ||||||||||||||| |||| |||||||||
Sbjct 595 CCAACACTTTCCTTGTTGGACACTCTGTCACCCTTGCTGATATTGTCACAATCTGCAACT 654
Query 666 TGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGAATTCCCTCATGTTG 725
|||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 655 TGAACTTGGGATTTGCCACCGTGATGACCAAGAAATTTACCTCTGCATTCCCTCATGTTG 714
Query 726 AGCGGTACTTCTGGACTGTGGTTAACCAACCA-AACTTCAAGAAAGTGTTGGGTGATGTC 784
|| | ||||||||||| |||||||||| ||| || |||||||| ||||||||||||| |
Sbjct 715 AGAGATACTTCTGGACAATGGTTAACCAGCCAGAA-TTCAAGAAGGTGTTGGGTGATGCC 773
Query 785 AAACAGACTGAAGCTGTCCCTCCTA-TTGCTTCCAAGAAAGCTGCC-CAGCCTGCGAAGC 842
||||| || |||||||||||||| | || || | ||||||||| || |||||||| ||||
Sbjct 774 AAACAAACCGAAGCTGTCCCTCC-AGTTCCTACTAAGAAAGCT-CCACAGCCTGCTAAGC 831
Query 843 CCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAAGCTTGCCGAAG 902
|||| || ||||| ||| |||| |||||| |||||||||||||| |||| ||| || |
Sbjct 832 CCAAGGAGGAGCCCAAG---AAGGCAGCCCCTGTAGCAGAGGCACCAAAGCCTGCTGAGG 888
Query 903 AGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACCACCAAGCCCTA 962
|||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 889 AGGAGGAAGCACCAAAGCCTAAAGCCAAGAATCCTCTTGACTTGCTACCACCAAGCCCAA 948
Query 963 TGGTACTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTTCCGCGAGGTTG 1022
|||| || ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 949 TGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTG 1008
Query 1023 CTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTTTGGTTCTGTGACT 1082
|||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1009 CTATCAAAGGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT 1068
Query 1083 ACAAGTACAACGATGAGAACATGGTATCATTTGTCACACTCAACAAGGTGGGTGGGTTCC 1142
| ||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||
Sbjct 1069 ATAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGTAGGAGGGTTCC 1128
Query 1143 TTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGATTTGCGGGTCAG 1202
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1129 TTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTTATTTGCGGGTCAG 1188
Query 1203 AGGGTCCGTTT-AAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGATCCCAAAGTTC 1261
||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1189 AGGGTCC-TTTCAAGGTGAAGGGTTTATGGCTTTTCCGTGGACCAGAGATCCCCAAGTTC 1247
Query 1262 ATAATGGACGAGGTGTATGACATGGAGCTGTACGAGTGGACTAAGGTTGATATCTCAGAT 1321
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 ATAATGGATGAGGTGTACGACATGGAGCTGTACGAGTGGACTAAGGTTGATATCTCCGAT 1307
Query 1322 GAAGCCCAGAAGGAGCGTGTTAGCCAGATGATCGAAGATGCAGAGCCATTTGAAGGTGAG 1381
||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 1308 GAAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCTGAGCCATTTGAAGGCGAG 1367
Query 1382 GCTCTCTTGGATGCCAAGTGCTTCAAGTGAAAAG 1415
||||| ||||| ||||| ||||| ||||||||||
Sbjct 1368 GCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87348948300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5