BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471065
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09650.1 | Symbols: | F-box and associated interaction doma... 1696 0.0
AT1G12490.1 | Symbols: | F-box associated ubiquitination effec... 435 7e-121
AT4G19452.1 | Symbols: | pseudogene of F-box family protein | ... 418 7e-116
> AT1G09650.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478
Score = 1696 bits (918), Expect = 0.0
Identities = 1190/1313 (91%), Gaps = 51/1313 (4%)
Strand=Plus/Plus
Query 1 CCTTGATCTGATGAAAAGGTAGTATTGAGTTTTAAGAAACGGCAAGTGTTGAGTTTT-AC 59
||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||| |
Sbjct 21 CCTTGATCTGATGAAAAGGAAGTGTTGAGTTTTGAGAAACGGAAAGTGTTGAGTTTTGTC 80
Query 60 TTTTCTGTACAAGATTTTTGTTTTCCTGTTTTATCTATAAATAAACCTCTTTAATCTCTT 119
|||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 81 TTTTCTATAGAAGATTTTTGTTTTCCTGTTTTATCTATAAATAAGCCTCTTAAATCTCTT 140
Query 120 CATCAACAATGACTTGTCTGCAATCACAAGAATGTCGAAAAAGCAACGTTGCTTGATGAT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 141 CATCAACAATGACTTGTCTGCAATTACAAGAATGTCGAAAAAGCAACGTTGCTTGATGAT 200
Query 180 GGAATCCCTGCCCCACGATGTCGTAGAGCGCATCCTAGAGAGACTGGCTGTGGATCCTCT 239
|||||| ||||||||||| ||||||||| |||||||||||||||| | || |||||||||
Sbjct 201 GGAATCGCTGCCCCACGAGGTCGTAGAGTGCATCCTAGAGAGACTTGATGCGGATCCTCT 260
Query 240 GCTGAGATTCAAGGCTGTATCAAAACAATGGAAATCAACTATCGAATCTCCATTCTTCCA 299
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 261 GCTGAGATTCAAGGCTGTATCGAAACAATGGAAATCAACTATTGAATCTCCATTCTTCCA 320
Query 300 GCGAAGACAGTTCCA-ACAGCGACAGCAATCAGGTAATCCAGATGTTCTCTTGGTCTCCC 358
|||||||||||| || |||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 321 GCGAAGACAGTT-CACACAGCGTCAGCAATCAGGTAATCCAGATGTTCTCATGGTCT-CC 378
Query 359 TATGTCGTTATGATGTTATTAATCCCGATATAGAAGCTCTTGCTACATTGGTGTTGGGTT 418
|||| || || ||||||| | || |||||||||||| ||||||||||||||||||
Sbjct 379 -----CGTTGTGCTGATATTAATTCGGAAATAGAAGCTCTTACTACATTGGTGTTGGGTT 433
Query 419 CATCATCATCTGTCAAGATCCCTACTCCTTGGGAGGA-GA--AGGAGGAGAACACTGTAT 475
||||||||||||||||||||||||||||||||||||| || |||||||| ||| | ||
Sbjct 434 CATCATCATCTGTCAAGATCCCTACTCCTTGGGAGGAGGAGGAGGAGGAGGACAAAGAAT 493
Query 476 ACT-TAGTTTCCC-GTGATAGCTGTGACGGTCTCGTTTGTCTCTTCGATATCA-GGAAAT 532
||| | ||||||| | |||||||||||||||||||||||||||||||||| | ||||
Sbjct 494 ACTCT-GTTTCCCAG-GATAGCTGTGACGGTCTCGTTTGTCTCTTCGATA-AATTCAAAT 550
Query 533 CCGGTTTTGTGGTCAATCCCACCACTAGATGGTATCACCCTCTTCCTCCT-TGCCAATTA 591
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 551 CCGGTTTTGTGTTCAATCCCGCCACTAGATGGTATCACCCTCTTCCT-CTCTGCCAATTA 609
Query 592 CAACAACTCATTACTGGCTTAGGGGACAGTTTCTACGATCTTGGATACAGACTCTCTAAG 651
||||||||| ||| || | |||| ||| ||||||||||||||||||||||| |||||| |
Sbjct 610 CAACAACTCCTTATTGCCATAGGCGACGGTTTCTACGATCTTGGATACAGAGTCTCTAGG 669
Query 652 CTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCT 729
Query 712 TTAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACGCT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ATAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACGCT 789
Query 772 TGGAGGTATGTTTCTCCCGCTGCTCCGTATCGGATTGTTGGTTGCCCCTCACCTGTCTGC 831
|||||||||||||| || |||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 790 TGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCCCCGCACCTGTCTGC 849
Query 832 GTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAGACCAAAATTCTATCGTTTGAT 891
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 850 GTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTTTCGTTCGAT 909
Query 892 CTTCACACCGAAACTTTTCAAGTCGTTTCTAAAGCTCCATTTGCCAATGTTGATGGATTC 951
|||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 910 CTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGTAGATGGATTC 969
Query 952 --------CA----C--C-TCGACAACCGCTTGTGCGTTTCCGAGATGAAGCGGCCCAAC 996
|| | | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 970 GATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATGAAGCTGCCCAAC 1029
Query 997 CAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAATGTGTTCCATTGAT 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1030 CAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAATGTGTTCCATTAAT 1089
Query 1057 CTGGATATAACTTCTCATTGGTTTGGTCGTCAC-C---TATGCGCGGTCATGCCACTAGC 1112
|||||||||||||||| ||||||||||| | || | ||||||| ||| ||||||||||
Sbjct 1090 CTGGATATAACTTCTCGTTGGTTTGGTCCT-ACTCAAGTATGCGCCGTCTTGCCACTAGC 1148
Query 1113 ACTTTTGGATGGGAAGAAGAAGAAG---------TTGTTGTTTTATTGTCGTG-AGCGAA 1162
||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1149 ACTTTTGGATGGGAAGAAGAAGAAGAAGAAAAAGTTGTTGTTTTATTGTCGTGTA-CGAA 1207
Query 1163 GTCGAACATTGATGGTACATGATCACGAAACCAAATCATATGATGTTGCTTTCGAGGCTG 1222
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1208 AACGAACAATGGTGGTACATGATGACGAAACCAAATCATATGATGTTGCTTTCGAGGCTG 1267
Query 1223 ACTCCGTCGGTTATCCTGTTTGTTATTTCCCGAGTTTAATATCTATTTCATAA 1275
||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1268 ACTCCATCGGTCATCCTGTCTGTTATTTCCCGAGTTTAATATCTATTTCATAA 1320
> AT1G12490.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:4260783-4261869 FORWARD LENGTH=1059
Length=1059
Score = 435 bits (235), Expect = 7e-121
Identities = 373/435 (86%), Gaps = 27/435 (6%)
Strand=Plus/Plus
Query 865 GAGGAGACCAAAATTCTATCGTTT-GATCTTCACACCGAAACTTTTCAAGTCGTTTCTAA 923
||||| |||||||||||||| ||| ||||||||||| ||||| |||| ||| || |||||
Sbjct 628 GAGGAAACCAAAATTCTATC-TTTCGATCTTCACACTGAAACCTTTCGAGTGGTCTCTAA 686
Query 924 AGCTCCATTTGCCAA--T----G---TTG--AT-G-GAT-T-CCACCTCGACAACCGCTT 968
|||||| ||| |||| | | ||| || | || | | | |||| |||||||||
Sbjct 687 AGCTCCTTTTACCAATGTAAAAGCTTTTGATATCGTCATGTGCAATCTCGGCAACCGCTT 746
Query 969 GTGCGTTTCCGAGATGAAGC-GGCCCAACCAAGTGATATGGTCATTCAATTCAGGTAACA 1027
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 747 GTGCGTTTCCGAGAAGAA-CTGGCCCAACCAAGTGATATGGTCATTCAATTCAGGCAACA 805
Query 1028 AGACATGGCACAAAATGTGTTCCATTGATCTGGATATAACTTCTCATTGGTTTGGTCGTC 1087
|||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||| ||
Sbjct 806 AGACATGGCACAAAATGTTTTCCATTAATCTTGATGTAACTTCTCATTGGTTTGGTAATC 865
Query 1088 ACCTATGC-GCGGTCATGCCACTAGCACTTTTGGATG-G--GAAGAAGAAGAAG---TTG 1140
|| || || ||||||||||||||||||||||| ||| | ||||||||||||| |||
Sbjct 866 ACATA-GCCGCGGTCATGCCACTAGCACTTTTTTATGAGAAGAAGAAGAAGAAGAAGTTG 924
Query 1141 TTGTTTTATTGTCGTGAGCGAAGTCGAACATTGATGGTACATGATCACGAAACCAAATCA 1200
|||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 925 TTGTTTTATTGTCGTGTGCGAAGTCGAACATTGATGGTATATGATCCCGAAACCGAATCA 984
Query 1201 TATGATGTTGCTTTCGAGGCTGACTCCGTCGGTTATCCTGTTTGTTATTTCCCGAGTTTA 1260
||||||||||||||| | | | ||||| ||||||||||| |||||||||||| |||||||
Sbjct 985 TATGATGTTGCTTTCAATGATTACTCCATCGGTTATCCTCTTTGTTATTTCCAGAGTTTA 1044
Query 1261 ATATCTATTTCATAA 1275
|| ||||||||||||
Sbjct 1045 ATCTCTATTTCATAA 1059
Score = 387 bits (209), Expect = 2e-106
Identities = 312/360 (87%), Gaps = 14/360 (4%)
Strand=Plus/Plus
Query 452 AGGAGAAGGAGGA-GAACACTGTATACTTAGTTTCCCGTGATAGCTGTGACGGTCTCGTT 510
||||||||||||| ||| | | | | ||||||||| ||||||||||||||||||||||
Sbjct 275 AGGAGAAGGAGGACGAAGAAT-TCTTCTTAGTTTCTTTTGATAGCTGTGACGGTCTCGTT 333
Query 511 TGTCTCTTCGATAT-CAGGAAATCCGGTTTTGTGGTCAATCCCACCACTAGATGGTATCA 569
||||||| | | || | ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 334 TGTCTCTAC-AAATACTGGAAATCTGGTTATGTGGTCAATCCCACCACTAGATGGTATCG 392
Query 570 CCCTCTTCCTCCT-TGC-CAATTACAACAACTCATTACT-GGCTTAGG-GGACAGTTTCT 625
|||||||||| || | | ||||||||||||||| ||| | ||||||| | |||| |||
Sbjct 393 CCCTCTTCCT-CTCT-CTCAATTACAACAACTCCTTA-TCAGCTTAGGTCG-CAGTGTCT 448
Query 626 ACGATCTTGGATACAGACTCTCTAAGCTTGGATTCGGTAAAGACAAACTCACAGGCACAT 685
||| |||||||||| | ||| | | |||||||||||||||||||| |||| |||||||
Sbjct 449 TCGAGCTTGGATACACAGTCTGTGATATTGGATTCGGTAAAGACAAAATCACGGGCACAT 508
Query 686 ACAAGCCCGTTTGGTTATACAACTCTTTAGAAATTGGCCTAGAAAACGCTACTACATGCG 745
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 509 ACAAACCCGTTTGGTTATACAATTCTTTAGAAATTGGCCTTGAAAACGCTACTACATGCG 568
Query 746 AGGTTTTCGACTTTAGCACCAACGCTTGGAGGTATGTTTCTCCCG-CTGCTCCGTATCGG 804
||||||||||||||| ||||||||||||||| ||||||||||| | | ||||| ||||||
Sbjct 569 AGGTTTTCGACTTTAACACCAACGCTTGGAGATATGTTTCTCC-GACCGCTCCCTATCGG 627
> AT4G19452.1 | Symbols: | pseudogene of F-box family protein
| chr4:10609555-10610200 REVERSE LENGTH=579
Length=579
Score = 418 bits (226), Expect = 7e-116
Identities = 429/522 (82%), Gaps = 34/522 (7%)
Strand=Plus/Plus
Query 371 ATGTTATTAATCCCGA-TATAGAAGCTCTT--GCTACATTGGTGTTGGGTTCATCATCAT 427
|||||| ||| ||||| |||||| || || | |||||| ||||||||||||||||
Sbjct 23 ATGTTA-TAAACCCGACCATAGAATCT-TTAAG-AACATTGCAGTTGGGTTCATCATCAA 79
Query 428 CTG-TCAAGATCCCTACTCCTTGGGAGGAGAAGGAGGAGAAC--ACTGTATACTTAGTTT 484
| | |||||||||||||||||| | |||| | |||| ||| |||| ||||||||||
Sbjct 80 C-GTTCAAGATCCCTACTCCTT--G-GGAG-A--AGGATAACGTACTG--TACTTAGTTT 130
Query 485 CCCGTGA-TAGCTGTGACGGTCTCGTTTGTCTCTT-CGATATCA-G-GAAATCCGGTTTT 540
| | | | ||| |||||||||||||||||||| || | | |||| | |||||||||| |
Sbjct 131 CACAT-AGTAGTTGTGACGGTCTCGTTTGTCT-TTAC-A-ATCACGACAAATCCGGTTAT 186
Query 541 GTGGTCAATCCC-ACCACTAGATGGTATCACCCTCTTCCTCCTTGCCAATTA-CAACAAC 598
|||||||| ||| |||||||||||||||| |||||||||| ||| | |||| ||| |||
Sbjct 187 GTGGTCAA-CCCGACCACTAGATGGTATCGGCCTCTTCCTCTTTG-CGATTATCAAAAAC 244
Query 599 TCATTACT-GGCTTAGGGGACAGTTTCTACGATCTTGGATACAGACTCTCTAAGCTTGGA 657
|||| | | | |||| | || ||| |||| | ||| | || | ||| || |||||||
Sbjct 245 TCATGA-TCGACTTACGAGATGGTTACTACAAGCTTAAACGCAAATTCTTTATGCTTGGA 303
Query 658 TTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCTTTAGAA 717
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 304 TTCGGTAAAGACAAATTCAGGGGCACATACAAGCCCGTTTGGTTATACAACTCTGCAGAA 363
Query 718 ATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACGCTTGGAGG 777
|| |||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 364 ATAGGCCTAAAAAACGCTACTACATGCGAAGTTTTCGACTTTAGTACCAATGCTTGGAGG 423
Query 778 TATGTTTCTCCCGCTGCTCCGTATCGGATTGTTGGTTGCCCCTCACCTGTCTG-CGTAGA 836
||||| ||| ||||||||| |||||||||| || || |||| ||||||| | | ||||
Sbjct 424 TATGTCACTCTCGCTGCTCCTTATCGGATTGCTGCTTACCCCGCACCTGTGTATC-TAGA 482
Query 837 TGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAGACCAAAAT 878
|||||||||| ||||||||||||||||| | || ||||||||
Sbjct 483 TGGGTCGCTTTATTGGTTCACCGAGTGCAAAGAAACCAAAAT 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5