BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471067
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prot... 1910 0.0
> AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3127771-3131094 REVERSE LENGTH=1387
Length=1387
Score = 1910 bits (1034), Expect = 0.0
Identities = 1244/1341 (93%), Gaps = 32/1341 (2%)
Strand=Plus/Plus
Query 3 TAAGCACAAAAATAGAAAATATCGAAAATGAGAT--GAGAGAGA-GAGGACTCTCTCATC 59
||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 10 TAAACACAAAAATAGAAAATATCGAAAATGAGATGAGAGAGAGAGGAGGAGTCTCTCATC 69
Query 60 GTGCGTAGGGCTTTTGACTCCCTCCCCTACTTTGCCTACTTCTTCCTTCTTCCT-T-TGG 117
||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||
Sbjct 70 GTGAGTAGGGCTTTTGACTCCCT-CCCTACTTTGCCTACTTCTT-CTTCTTCCTCTGTGG 127
Query 118 CCACTCTACACAGTCCACACCTACTT--AGACACCTTTCTCAACCTTGAGATCGGCGTCA 175
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 128 CCACTCTACACAGTCCACACCTACTTCAAGACACCTTTCTCATCCTTGAGATCGGCGTCA 187
Query 176 GATCCTCCGCCGCATCTTCTCTTCACTATCTCCGTGTTTAAGATGATGGAATCCGGAGCT 235
||||||||||||| ||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 188 GATCCTCCGCCGCTTCTCCTCTTCACTATCTCCGTGTTAAAGATGATGGAATCTGGCGCT 247
Query 236 GGTTTCGCGGCCATGGAAGAGAGGATCTCTCCTGGAAGTTTCTTCCAGTTTCCTCTTTCT 295
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 248 GGTTTCGTGGCCATGGAAGAGAGGATCTCTCCTGGAAGTTTCTTCCAGTATCCTCTTTCT 307
Query 296 GGATTCCGCGCTTCTCCCAATCGATCCCCTTGTCCTCCCACTGATCGTGAAAGGTACTTG 355
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 308 GGATTCCGTGCTTCTCCTAATCGATCCCCTTGTCCTCCCTCTGATCGTGAAAGGTACTTG 367
Query 356 ACTGAATTATTGCAAGAGAGACAAAAGTTGGGTCCCTTTTTGCAAGTTATGCCAAATTGC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 ACTGAATTATTGCAAGAGAGACAAAAGTTGGGTCCCTTTTTGCAAGTTATGCCAAATTGC 427
Query 416 TGCAGACTGCTAAATCAAGAAATCAGGAGGGTCTCTAGTTTTCCTGATCCTGATAGATAT 475
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 428 TGCAGACTGCTTAATCATGAAATCAGGAGGGTCTCTAGTTTTCCTGATCTTGATAGATAT 487
Query 476 GAGCATGGCAGTCCATTTAGATCGCTTGGCCAGCCGACAAATGGAAAGCTTGATTTAGAG 535
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 488 GAGCATGGCAGTCCATTTAGATCGCTTGGTCAGCCGACAAATGGAAAGCTTGATTTAGAG 547
Query 536 GGATGGTCGATGATGCAAGCGGAGGAAAACTGTCACCTCCAGAGAGCTTCTCCATTTCGT 595
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 548 GGATGGTCGATGATGCAAGCCGAGGAAAACTGTCACCTCCAGAGAGCTTCTCCATTTCGC 607
Query 596 TCTCCTGCCCCAGTGGGCTGGATTGGGATGCCAGGACTCCCTAACCCACCCATTGTGAAA 655
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 608 GGTCCTTCCCCAGTGGGCTGGATTGGGATGCCGGGACTCCCTAACCCACCCATTGTGAAA 667
Query 656 AAAGTGATTAGACTTGATGTGCCAGTGGATAAATATCCAAGCTATAATTTTGTTGGGCGG 715
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 668 AAAGTGATTAGACTTGATGTCCCAGTGGATAAATATCCAAGCTATAATTTTGTTGGGAGG 727
Query 716 ATTCTCGGTCCACGTGGAAACTCCCTAAAAAGAGTTGAGCTAGCAACCCACTGCAGGGTG 775
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 ATTCTTGGGCCACGTGGAAACTCCCTAAAAAGAGTTGAGCTAGCAACCCACTGCAGGGTG 787
Query 776 TTTATTAGAGGGCGAGGATCTGTGAAGGATACTGTCAAGGAGGAAAAACTTAAA-GGTAA 834
||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 788 TTTATCAGAGGACGAGGATCTGTGAAGGATACTGTCAAGGAGGAAAAA-TTAAAAGGTAA 846
Query 835 GCCAGGGTACGAGCATCTCTGTGAGCCACTACATGTACTGATCGAGGCCGAGCTTCCAGA 894
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 GCCAGGGTACGAGCATCTCTGCGAGCCACTACATGTACTGATCGAGGCCGAGCTTCCAGA 906
Query 895 AGACATAATAAACTCTCGATTGGAACATGCAGTGCATTTCCTGGAATCACTCCTAAAGCC 954
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 907 AGACATAATAAACTCTCGATTGGAGCATGCAGTGCATTTCCTGGAATCACTCCTGAAGCC 966
Query 955 GATGGACGAATCAATGGATCACTACAAGAGGGAACAGCTGAAAGAGTTAGCAGCTCTGAA 1014
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 967 GATGGACGAGTCAATGGATCACTACAAGAGGGAACAGCTGAAGGAGTTAGCGGCTTTGAA 1026
Query 1015 TGGTACACTAAGGGAGGAGAGTCCAAGTCCGAGCTTGAGCCCTTGTTTGAGTCCGAGCAT 1074
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1027 TGGTACACTAAGGGAGGAGAGTCCGAGTCCGAGCTTGAGCCCTTGTTTGAGCCCCAGCAT 1086
Query 1075 GTCCCCTTTCAACAGCAAGCGTGCTAAGACTG-GACA--ATAAAGATTTTACCTGAGAGA 1131
|||||||||||||||||||||||||||||| | || | || |||| ||| ||
Sbjct 1087 GTCCCCTTTCAACAGCAAGCGTGCTAAGACAGAGATATGATCAAGAGAA-ACCACT-AG- 1143
Query 1132 TG-ATCAATGTTGTTGAGACAGAAACCATGTGTT--CTAAGTTCTAACGTTTGGACTCCT 1188
|| || | |||| | | ||| | | ||| ||| |||||||||||||||||||||| |
Sbjct 1144 TGCATGGGTCTTGTGG-G-CAGGATC-ATGAGTTTGCTAAGTTCTAACGTTTGGACTCTT 1200
Query 1189 CAATTAATTTATTTTGTCATTAAGTTTATTCTTTATTTTTGAAAATTTTGTTGGTTAACT 1248
|||||||||||||||||||||| ||||||||||||||||| || | | ||| ||
Sbjct 1201 GAATTAATTTATTTTGTCATTAACTTTATTCTTTATTTTTG----TT--G--G-TTAGCT 1251
Query 1249 GAGATGACCATTGACCAGTGGGTAATAAACTAATAATGGTGTTTATGAAAATGTAATCTC 1308
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1252 GAGATGACCATTAACCAGTGGGTAATAAACTAATAATGGTGTTTATGAAATTGTAATCTC 1311
Query 1309 GTTCTCAATCATTGTGACCTT 1329
|||||||||||||| |||||
Sbjct 1312 CTTCTCAATCATTGTAACCTT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5