BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471071
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like s... 1476 0.0
> AT1G09700.1 | Symbols: HYL1, DRB1 | dsRNA-binding domain-like
superfamily protein | chr1:3137767-3140353 REVERSE LENGTH=1688
Length=1688
Score = 1476 bits (799), Expect = 0.0
Identities = 911/965 (94%), Gaps = 8/965 (1%)
Strand=Plus/Plus
Query 145 TCTT-CTCATCGCCGTGCCCTACTTACC-ATTCTTCATCTCTTCAGCTACATTCTGCTCG 202
|||| ||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||
Sbjct 171 TCTTGCTCTTCGCCGTGCCCTACTAACCTATTATTCGTCTCTTCAGCTACATTCTGCTCG 230
Query 203 TGAAAATGACCGCCAATGATGTTTCCTCTGGTGTTTCCAATTGCTATGTGTTCAAAAGTC 262
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 231 TGAAAATGACCTCCACTGATGTTTCCTCTGGTGTTTCCAATTGCTATGTTTTCAAAAGTC 290
Query 263 GGTTGCAGGAGTATGCTCAGAAATACAAGCTCCAAACGCCTGTTTATGAGACT-GTCAAA 321
|||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||
Sbjct 291 GGTTGCAGGAGTATGCTCAGAAGTACAAGCTCCCAACGCCTGTTTATGAGA-TCGTTAAA 349
Query 322 GAAGGCCCTTCACACAAATCTTTCTTTCAATCGACAGTGATACTGAATGGTGTCAGATAT 381
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 350 GAAGGCCCTTCACACAAATCTTTATTTCAATCGACTGTGATACTGGATGGTGTCAGATAT 409
Query 382 AATTCTTTGCCTGGATTCTTCAATCGTAAGGCTGCAGAGCAATCAGCTGCCGAGGTTGCT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AATTCTTTGCCTGGATTCTTCAATCGTAAGGCTGCAGAGCAATCAGCTGCCGAGGTTGCT 469
Query 442 CTCCAGGAATTAGCAAAATCCAGTGAGCTAAGCCAATGTGTTTCACAACCTGTTCATGAA 501
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 470 CTCCGGGAATTAGCAAAATCCAGTGAGCTAAGCCAATGTGTTTCACAACCTGTTCACGAA 529
Query 502 ACGGGGTTATGCAAGAACCTTCTTCAAGAGTACGCTCAAAAGATGAATTACGCTATTCCA 561
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 530 ACGGGATTATGCAAGAACCTACTTCAAGAATACGCTCAAAAGATGAATTACGCGATTCCA 589
Query 562 TTGTATCAGTGCCA-AAGGATAGAAACTCTTGGGAGAGCTACACAATTCACATGCACTGT 620
|||||||||||||| |||| | |||||||||||||||| ||||||||||||||| |||||
Sbjct 590 TTGTATCAGTGCCAGAAGG-TCGAAACTCTTGGGAGAGTTACACAATTCACATGTACTGT 648
Query 621 AGAGATTGGAGGCATAAAGTACACAGGAGCTGCAACAAGAACTAAAAAAGATGCTGAGAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGAGATTGGAGGCATAAAGTACACAGGAGCTGCAACAAGAACTAAAAAAGATGCTGAGAT 708
Query 681 AAGCGCTGGGAGAACTGCTCTTTTAGCGATCCAGTCAGA-ATCTAAAAACAACCTTGCCA 739
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 709 TAGCGCTGGGAGAACTGCTCTTTTAGCGATCCAGTCAGACA-CTAAAAACAACCTTGCCA 767
Query 740 ACTACAACACTCAGCTTACTGTACTTCCTTGTGAGAAGAAGACATTACTGGCACCGATCC 799
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||
Sbjct 768 ACTACAACACTCAGCTTACTGTACTTCCTTGTGAGAAGAAGACAATACAGGCAGCTATCC 827
Query 800 CACTTAAAGAAACCATCAAGACTCCTAAAGCCAGGAAGGCTCAGTTCAAGAGGAAAGCTC 859
| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 828 CGCTTAAAGAAACCGTCAAGACTCTTAAAGCCAGGAAGGCTCAGTTCAAGAAGAAAGCTC 887
Query 860 GGAAAGTAAAACGCAAAGTAGCTATGAATCCTGAAGATGTTATTATCCCTCCTCAACCTA 919
||||| |||||||| |||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 888 AGAAAGGAAAACGCACAGTAGCTAAAAATCCTGAAGATATTATCATCCCTCCTCAACCTA 947
Query 920 CCGAGCATTGTCAAAACGATCAGTCTGAGAAAATTGAGACAACGCTAAATCTGGAACCTT 979
| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 948 CTGATCATTGTCAAAACGATCAGTCAGAGAAAATTGAGACAACGCCAAATCTGGAACCTT 1007
Query 980 CTACATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGTGTGGAGACAGAGAAAATTG 1039
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGTGTGGAGACAGAGAAAATTG 1067
Query 1040 AGACAAAGCTAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTG 1099
|||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1068 AGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTG 1127
Query 1100 GGAGT 1104
|||||
Sbjct 1128 GGAGT 1132
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 1142 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1201
Query 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1202 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCT 1261
Query 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
|||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1300
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1226 GAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGGAG 1285
Query 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1286 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTCCT 1345
Query 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
|||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1384
Score = 261 bits (141), Expect = 1e-68
Identities = 153/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 1058 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1117
Query 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1118 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTCCT 1177
Query 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
|||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1216
Score = 255 bits (138), Expect = 6e-67
Identities = 152/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 1310 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1369
Query 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1370 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAATCTTCT 1429
Query 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1430 TCATGCATGAGCGGGTTAAAGGAGGCAGCATTTGGGAGT 1468
Score = 137 bits (74), Expect = 2e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1394 GAGAAAATTGAGACAACGCCAAATCTGGAATCTTCTTCATGCATGAGCGGGTTAAAGGAG 1453
Query 1006 GCAGCATTTGGGAGTGTGGAGACAGA 1031
||||||||||||||||||||||||||
Sbjct 1454 GCAGCATTTGGGAGTGTGGAGACAGA 1479
Score = 132 bits (71), Expect = 1e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1028 CAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGG 1087
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 972 CAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGG 1031
Query 1088 AGGCAGCATTTGGGAGT 1104
|||||||||||||||||
Sbjct 1032 AGGCAGCATTTGGGAGT 1048
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1105 TGTCAAGATGGAGTCTTGTGAGTTTGTCATAGTAACTATTTGGTTA 1150
||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1499 TGTCAAGATGGAGTCTTGTGAGTTTGTCATAGTTACTATATGGTTA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5