BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471072
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09710.2 | Symbols: | Homeodomain-like superfamily protein ... 1336 0.0
AT1G58220.1 | Symbols: | Homeodomain-like superfamily protein ... 701 0.0
> AT1G09710.2 | Symbols: | Homeodomain-like superfamily protein
| chr1:3140868-3144262 FORWARD LENGTH=2154
Length=2154
Score = 1336 bits (723), Expect = 0.0
Identities = 891/967 (92%), Gaps = 31/967 (3%)
Strand=Plus/Plus
Query 1 CATCTTCTTCTCCGATCGTCTGTCTTTATCGGCGGCTTCCTTTCTTGGGCA-T-CCTCAT 58
||||||||||||||||||||| || | | ||| | ||||||||||| | |||| |
Sbjct 96 CATCTTCTTCTCCGATCGTCT-TC---A-C--CGG--T--TTTCTTGGGCATTCCCTCGT 144
Query 59 GCGTAA--GTCT-CTAATTGAATACGACGAAGATGGTTG------ATGATACTAGTAGCA 109
|| || || | | || | ||||||||||||||||||| || ||||||||||||
Sbjct 145 GC--AATTGT-TGC-AA-TAAATACGACGAAGATGGTTGCTAATAATAATACTAGTAGCA 199
Query 110 ATAGCAGGAAGAGAATCATTACTGAAGGCGACATCGCCACTCTTTTGCAGAGATATGATA 169
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 200 ATCGCAGGAAGAGAATCATTACTGAAGGCGACATCGCCACTCTTTTGCTGAGATATGATA 259
Query 170 TGAAGACGATACTGAAAATGCTACAGGAGATGGCTTATTATTCAGAAATCAAGATGGACT 229
|| |||||||||||| ||||||||||||||| |||||| ||| |||| |||||||||||
Sbjct 260 TGGAGACGATACTGAGAATGCTACAGGAGATATCTTATTGTTCCGAAACCAAGATGGACT 319
Query 230 GGAATGAGTTGGTGAAGAAGACTACTACCGGAATTACCAATGCTAGAGAGTACCAGTCGC 289
|||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 320 GGAATGCGTTGGTGAAGAAGACCACTACCGGAATTACTAATGCTAGAGAGTACCAGTTGC 379
Query 290 TATGGCGCCATCTTTCTTATCGGCATCCTCTCCTCCCTGTGGAAGATGATGCTCAACCTC 349
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 380 TATGGCGTCATCTTTCTTATCGGCATCCTCTCCTCCCTGTGGAAGATGATGCTCTACCTC 439
Query 350 TGGACGATGATAGTGACATGGAGTGCGAATTGGAAGCTTCCCCTGCAGTCAGCCATGAAG 409
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 440 TGGACGACGATAGTGACATGGAGTGCGAATTGGAAGCTTCTCCTGCAGTCAGCCATGAAG 499
Query 410 CATCAGTGGAGGCTGTTGCGCATGTCAAAGTGATGGCTGCTTCATATGTTCCAAATGAGT 469
|||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 500 CATCAGTGGAGGCTATTGCACATGTCAAAGTGATGGCTGCTTCATATGTTCTAAGTGAGT 559
Query 470 CCGATATACTCGACAATTCAACAGTTGAGGCTCCCTTGACTATAAACATACCTTATG-TT 528
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 560 CTGATATACTCGACGATTCAACAGTTGAGGCTCCCTTGACTATAAACATACCTTATGCTT 619
Query 529 CTGCCTGAGGGTTCTCAGGAACCATCAGAGTCTCATTGGTCATCAAGAGGGATGAATATC 588
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 620 -TGCCTGAGGGTTCTCAGGAACCATCAGAGTCTCCTTGGTCGTCAAGAGGGATGAATATC 678
Query 589 ACCTTTCCTGTCTGTCTTCAGAAAGTTACATCTACCGAGGGGATGAATGGAAATGGTTCA 648
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AACTTTCCGGTCTGTCTTCAGAAAGTTACATCTACCGAGGGGATGAATGGAAATGGTTCA 738
Query 649 GCTGGTAGTAGCATGGCTTTTCGGAAGAAAAGGAAAAAATGGTCTGCTGAGGAGGATGAG 708
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 739 GCTGGTATTAGCATGGCTTTTCGGAGGAAAAGGAAAAGATGGTCTGCTGAGGAGGATGAG 798
Query 709 GAGCTGTTCGCCGCTGTTAAGCGATGTGGTGAAGGGAACTGGGCTCATATCGTTAAGGGA 768
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 799 GAGCTGTTCGCCGCTGTAAAGCGATGTGGTGAAGGGAACTGGGCTCATATTGTTAAGGGA 858
Query 769 GGCTTTAGAGGAGAGAGAACCGCCTCCCAACTTTCGCAGAGGTGGGCGCTTATAAGAAAA 828
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 859 GACTTTAGAGGAGAGAGAACCGCCTCCCAACTCTCGCAGAGGTGGGCGCTTATAAGAAAA 918
Query 829 AGGTGTGATACTTCGACCTCTGTTAGCCAATCTGGCCTACAACCAACTGAAGCGCAGA-T 887
|||||| | |||||||||||||||||||||| |||||||||| |||||||||| | | |
Sbjct 919 AGGTGTCACACTTCGACCTCTGTTAGCCAATGTGGCCTACAAGGAACTGAAGCGAA-ACT 977
Query 888 AGCAGTTAACCATGCAATATCTTTAGCTCTGGGAAATCGGCCCCCTTCAAAAAAGCTTGC 947
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 978 AGCAGTTAACCATGCATTATCTTTAGCTCTGGGAAATCGGCCCCCTTCAAATAAGCTTGC 1037
Query 948 AATAGGT 954
|||||||
Sbjct 1038 AATAGGT 1044
Score = 774 bits (419), Expect = 0.0
Identities = 553/614 (90%), Gaps = 24/614 (4%)
Strand=Plus/Plus
Query 1380 TATGCGGCCTCTAGCTAATGGAGAATTGAAACCTGTGACGGCTTCATCATCCTCGAACAA 1439
||| ||| |||||||||||||| ||||||||||||| | |||||||||||| || |||||
Sbjct 1560 TATACGGTCTCTAGCTAATGGAAAATTGAAACCTGTTATGGCTTCATCATCTTCCAACAA 1619
Query 1440 ACTTCCTCTCATGGCTCCTCGTTCAGAAGGATCTACAATGCTTTCTGCTTCTGCCCCCTT 1499
|| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1620 ACCTCCTCTCATAGCTCCTCGTTCAGAAGGATCTTCAATGCTTTCTGCTTCCGCCCCCTT 1679
Query 1500 GGCTTCTCCATCGAGGATTGTCTCCAATCAGAGAGTTTTTGCAGCCTCTGTCCCAGCTAC 1559
|||||||| ||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 1680 GGCTTCTCTATCAAGGATTGTCTCCAATCAGAGAGTTTTTGCA------G-----GCT-C 1727
Query 1560 TGTATTACAACCAAAGCCAACTGCAGAGACTGTCACTTGCAAACCAGATGGTGGACAGAA 1619
|| | | || || | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1728 TG---T-C--CC--AG-CTACT---GAGATTGTCACTTGCAAACCAGATGGTGGACAGAA 1775
Query 1620 AGGGCAAGCTCGGGGTAATGAAGCAAGCTCATCGGCTGCAATCCAGCCACATCAAATGAC 1679
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1776 AGGGCAAGCTCGTGGAAATGAAGCAAGCTCATCGGCTGCAATCCAGCCACATCAAATAAC 1835
Query 1680 CTCAATAAACTCGGAGATTAGACAGGGAAAGCAGGCTACACAGGCTCAGTCCCCTAATCT 1739
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1836 CTCAAGAAACTTGGAGATTAGCCAGGGAAAGCAGGCTACACAGGCTCAGTCCCCTAATCT 1895
Query 1740 CTTACCTAGGAAAGTTCCAGTAGTTCGGGCTGCAGTTCACTGTGCTACTAACCATAAGTT 1799
||| |||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||
Sbjct 1896 CTTGCCTAGGAAAGTTCCAGTAGTTCGGACTGCAGTTCATTGTGCCACTAACCAAAAGTT 1955
Query 1800 GGTGGATAAACCATCTGATAAAACTGTAGTACCTATCAGAGGAGCTGGTTCGCAATCTAA 1859
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 GATGGATAAACCATCTGATCAAACTGTAGTACCTATCAGAGGAGCTGGTTCGCAATCTAA 2015
Query 1860 AGCCAAAGATGAAGTAAACAGTAAGGTTGGTCCGGCAATTAAAGTGAGTAGTGTATGCGG 1919
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 2016 AGCCAAAGGTGAAGTAAACAGTAAGGTTGGTCCGGTGATCAAAGTGAGTAGTGTTTGCGG 2075
Query 1920 AAAACCTCTTGAGGTTGCAACTGTGGCCGGGACCGGACAGGGTGTTTAGTTCTTTGACAT 1979
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2076 AAAACCCCTTGAGGTTGCAACTGTGGCAGGGACCGGACAGGGTGTTTAGTTCTTTGACAA 2135
Query 1980 AATCGTCGGATACT 1993
|||||| |||||||
Sbjct 2136 AATCGTTGGATACT 2149
Score = 617 bits (334), Expect = 1e-175
Identities = 379/401 (95%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 952 GGTGTTATGCCAACGAC-TACATCTTGTAGCATCACAGAACCGGAAGCCAATGGGGGCAG 1010
||| ||||||||||||| | ||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 1162 GGTCTTATGCCAACGACGT-CATCTTGTACCATCACAGAAACGGAAGCGAATGGGGGAAG 1220
Query 1011 CTCTTCTCAAGGTCAACAACAGTTCAAACCAATTGTTCAAGCATTGCCTCGGGCAGGAAC 1070
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1221 TTCTTCTCAAGGTCAACAACAGTCCAAACCAATTGTTCAAGCATTGCCTCGGGCAGGAAC 1280
Query 1071 ATCACTTCCGGGTTCAAAATCTCGAGTTGTTAAGAAATCAACTGCAAGCTCCACTTCCAG 1130
||||||||||| | |||| |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1281 ATCACTTCCGGCTGCAAAGTCTCGAGTTGTTAAAAAAACAACAGCAAGCTCCACTTCCAG 1340
Query 1131 ATCGAATCTTATGGTAACAGCTAATTCAGTAGCTGCAGCTGCATGCATGGGTGATGTATT 1190
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 ATCGGATCTTATGGTAACAGCTAATTCAGTAGCTGCAGCTGCATGCATGGGTGATGTATT 1400
Query 1191 GACTGCTGCATCAGGACCAAAGGTCGAACCTGGAAAAACTGATGCTCCACTAGTGCCAAA 1250
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1401 GACTGCTGCATCAGGACGAAAGGTCGAACCTGGAAAAACTGATGCTCCACGAGTGCCAAA 1460
Query 1251 GACTAAACCTGTAAAAAATGCTTCTACAGCCTGCATGCCTCGGCCCTCAGGTAGCCTCTC 1310
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1461 GACTAAACCTGTAAAACATGCTTCTACAGTCTGCATGCCTCAGCCCTCAGGTAGCCTCTC 1520
Query 1311 CATGCCAAAGGTTGAACCAGGAACGAGTGTTGCGGCCTCTA 1351
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1521 CATGCCAAAGGTTGAACCAGGAACGAGTGTTGCCGCCTCTA 1561
> AT1G58220.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:21558243-21562965 REVERSE LENGTH=2946
Length=2946
Score = 701 bits (379), Expect = 0.0
Identities = 985/1265 (78%), Gaps = 92/1265 (7%)
Strand=Plus/Plus
Query 88 ATGGTTGATGATACTAGTAGCAAT-AG--CAGG-AAGAGAATCATTACTGAAGGC-GACA 142
||||||||| | || |||| |||| || ||| ||||| |||| | |||| || ||||
Sbjct 297 ATGGTTGAT-A-AC-AGTAACAATAAGAAGAGGAAAGAG-TTCATCAGTGAA-GCAGACA 351
Query 143 TCGCCACTCTTTTGCAGAGATATGATA-TGAAGACGATACTGAAAATGCTACAGGAGATG 201
||||||||||||||||||||||||||| || |||||||||||| ||||||| || |||
Sbjct 352 TCGCCACTCTTTTGCAGAGATATGATACTG-TGACGATACTGAAGTTGCTACAAGAAATG 410
Query 202 GCTTATTATTCAGAAATC-AAGATGGACTGGAATGAGTTGGTGAAGAAGACTACTACCGG 260
|| |||||| | | || | |||||| | ||||||||||| ||||||||||| | ||| ||
Sbjct 411 GCGTATTATGCTG-AAGCAAAGATGAATTGGAATGAGTTAGTGAAGAAGACAAGTACTGG 469
Query 261 AATTACCAATGCTAGAGAGTACCAGTCGCTATGGCGCCATCTTTCTTATCG-GCATCCTC 319
|||||| | ||||||||| || |||| ||| ||||| |||||| ||||| | | || |||
Sbjct 470 AATTACTAGTGCTAGAGAATATCAGTTGCTTTGGCGGCATCTTGCTTATAGAG-ATTCTC 528
Query 320 TCCTCCCTGT-GGAAGATGATGCTCAACCTCTGGACGATGATAGTGACATGGAGTGCGAA 378
|| ||||||| |||| || |||||| | |||||| ||||||||||| |||||||| |||
Sbjct 529 TCGTCCCTGTGGGAA-ATAATGCTCGAGTTCTGGATGATGATAGTGATATGGAGTGTGAA 587
Query 379 TTGGAAGCTTCCCCTGCAGTCAGCCATGAAGCA-TCAGTGGAGGCTGTTGCGCATGTCAA 437
|||||||| ||||||| ||| || ||| | | | | ||| |||||||||||||| ||
Sbjct 588 TTGGAAGCATCCCCTGGAGTTAGTGTTGATGTAGT-AACGGAAGCTGTTGCGCATGTGAA 646
Query 438 AGTGATGGCTGCTTCATATGTTCCAAATGAGTCCGATATACTCGACA-ATTCAACAGTTG 496
||||||||||||||| ||||| |||| |||||||||||| | ||| | | ||||| ||||
Sbjct 647 AGTGATGGCTGCTTCCTATGTGCCAAGTGAGTCCGATATTCCCGA-AGACTCAACGGTTG 705
Query 497 AGGCTCCCTTGACTATAAACATACCTTA-TGTTCTGCCTGA-GGGTTCTCAGGAACCATC 554
||||||||||||| || ||||||||||| | |||| | | ||| |||||||||||||
Sbjct 706 AGGCTCCCTTGACCATTAACATACCTTACAG-CCTGCAT-AGGGGGCCTCAGGAACCATC 763
Query 555 AGAGTC-TCATTGGTCATCAAGAGGGATGAATATCACCTTTCCTGTCTGTCTTCAGAAAG 613
||| || | ||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 764 AGACTCAT-ATTGGTCATCAAGAGGGATGAATATCACCTTTCCTGTTTTTCTTCCGAAAG 822
Query 614 TTACATCTACCGAGGGG-ATGAATGGAAATGG-TTCAGCTGGTAGTAGCATGGCTTTTCG 671
|| || || || || ||||| ||||| || ||| |||||| ||||| |||
Sbjct 823 ---CAGCT---GAAGGACAT-AATGGGAATGGGTT-AGCC---AGTAGCTTGGCTCCTCG 871
Query 672 GAAGAAAAGGAAAAAATGGTCTGCTGAGGAGGATGAGGAGCTG-TTCGCCGCTGTTAAGC 730
||||| ||| ||||||||||| ||||||||||||||||||||| || || ||||||||||
Sbjct 872 GAAGAGAAGAAAAAAATGGTCAGCTGAGGAGGATGAGGAGCTGATT-GCTGCTGTTAAGC 930
Query 731 GATGTGGTGAAGGGAACTGGGCTCATATCGT-TAAGGGAGGCTTTAGA-GGAGAGAGAAC 788
|| ||||||||| | |||||| | |||| | ||||| || ||| || |||||| ||||
Sbjct 931 GACATGGTGAAGGCAGCTGGGCCCTTATC-TCTAAGGAAGAATTT-GAAGGAGAGCGAAC 988
Query 789 CGCCTCCCAACTTTCGCAGAGGTGGGCG-CTTATAAGAAAAAGGTGTGATACTTCGACCT 847
||||| ||||| || ||| |||||| | || ||||| | |||| ||||||||| | |
Sbjct 989 AGCCTCACAACTCTCACAGCGGTGGGGGGCT-ATAAGGAGAAGGACTGATACTTCAAACA 1047
Query 848 CTGT-TAGCCAATCTGGCCTACAACCAACTGAAGCGCAGATAGCAGTTAACCATGCAATA 906
|| | || |||| |||||||||| | ||| ||||| || || |||| ||| | |||| ||
Sbjct 1048 CT-TCTACCCAAACTGGCCTACAGCGAACAGAAGCACAAATGGCAGCTAATCGTGCATTA 1106
Query 907 TCTTTAGCTCTGGGAAATCGGCC-CCCTTCAAAAAAGCTTGCAATAGGTGTTA-TGCCAA 964
|||||||| ||||||||||| |||| ||||||| |||||| ||||| | | | ||||
Sbjct 1107 TCTTTAGCGGTGGGAAATCGGTTACCCT-CAAAAAAACTTGCAGTAGGTATGACT-CCAA 1164
Query 965 CGACTA-CATCTTGTAGCATCACAGA-ACCGGAAGCCAATGGGGGCAGC--TC-T--T-C 1016
| || |||| ||| ||||| || | | |||||||||| | |||| | | | |
Sbjct 1165 TG-CTGTCATCCGGTACCATCA-AGGGAGCACAAGCCAATGGTGCCAGCAGTGGTAGTAC 1222
Query 1017 -T--CAAGGTCAACAACAGT-TCAAAC-CAATTGTTCAAGCATTGCCTCGGGCAGGAACA 1071
| ||||||||||||||| ||| | ||| | | |||||||| | |||||| ||||
Sbjct 1223 ATTGCAAGGTCAACAACAGCCTCAGCCACAAAT-T-CAAGCATTATCACGGGCAACAACA 1280
Query 1072 TCACTTCCGGGTT-CAAAATCTCGAGTTG-T-TAA-GAAATCAACTGC-AAGCTCCACTT 1126
||| | || | || |||||||||||||| | ||| |||| |||| | || ||||||||
Sbjct 1281 TCAGTGCCAG-TTGCAAAATCTCGAGTTCCTGTAAAGAAAACAACAGGGAA-CTCCACTT 1338
Query 1127 CCAGATC-GAATCTTATGGTAACAGCTAATTCAGTAGCTGCAGCTGCATGCATGGGTGAT 1185
| ||| | || || |||||||| ||||||||||||||||| || || || ||| ||
Sbjct 1339 CGAGAGCAGAC-CTAATGGTAACTGCTAATTCAGTAGCTGCTGCAGCCTGTATGTCTG-- 1395
Query 1186 GTATTG-A-CTGCTGCATCAG-GACCAAAGGTCGAACCTGGAAA-AA--CTGATGCTCCA 1239
| | | | | |||| | ||| | || ||| | ||||| ||||| || ||| | || |
Sbjct 1396 GCCTGGCAACCGCTGTAACAGTG-CCTAAGATTGAACCAGGAAAGAATGCTGTTTCTGCG 1454
Query 1240 CTAGTGCCAAAGACTAAACCTGTAAAAAATGCTTCTACAGCCTGC-ATGCCTCGGCCCTC 1298
| ||||| |||||| |||| ||||||| ||||| |||| | | |||||||| || ||
Sbjct 1455 TTGGTGCCGAAGACTGAACCCGTAAAAACCGCTTCCACAGTTT-CTATGCCTCGTCCTTC 1513
Query 1299 AGGTA 1303
|||||
Sbjct 1514 AGGTA 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104517534690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5