BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471074
Length=3182
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09730.1 | Symbols: | Cysteine proteinases superfamily prot... 3051 0.0
> AT1G09730.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:3147667-3154380 REVERSE LENGTH=3386
Length=3386
Score = 3051 bits (1652), Expect = 0.0
Identities = 1972/2116 (93%), Gaps = 64/2116 (3%)
Strand=Plus/Plus
Query 1078 GACATTGAGGAGTTAAAGATTGCAGTAAAAGAACATAATTGGCCTGAGAAGCAACAAAAG 1137
||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1201 GACATGGAGGAGTTAAAGATTGCGGTAAAAGAACATAATTGGCCTAATAAGCAACAAAAG 1260
Query 1138 ATAAACTCCCTGCATGTGAAATACCCGGCTGTGTGGAATGCTGACCTCGAGGGTGACGTG 1197
|||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1261 ATAAACTCGCTGCATGTGAAATACCCGGCTGTGTGGAATACTGACCTCGAGGATGACGTG 1320
Query 1198 GAAGTATCAGGGTATAACTTGAATCAACAGAAGCGTTACTTTCCAAGCTTTGATGAACCT 1257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 GAAGTATCAGGGTATAACTTGAATCAACAGAAGCGTTATTTTCCAAGCTTTGATGAACCT 1380
Query 1258 TTTGAGGATGTTGTCTATCCGAAA-GGAGACCCAGATGCTGTTTCCATTTGCAAAAGAGA 1316
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1381 TTTGAGGATGTTGTCTATCC-AAAGGGTGACCCAGATGCTGTTTCCATTTGCAAAAGAGA 1439
Query 1317 TGTTGAGCTCTTGCAGCCAGAGACATTTGTGAATGACACAATCATTGACTTCTATATTAA 1376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 TGTTGAGCTCTTGCAGCCAGAGACATTTGTAAATGACACAATCATTGACTTCTATATTAA 1499
Query 1377 TTATTTAAAGAATCAGATTCAAACGGAGGAAAAACATAGATTCCATTTCTTTAACAGCTT 1436
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTATTTGAAGAATCAGATTCAAACGGAGGAAAAACATAGATTCCATTTCTTTAACAGCTT 1559
Query 1437 TTTCTTCCGGAAACTTGCTGATCTCGACAAAGATCCATCAAGTATAGCTGATGGAAAGGC 1496
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1560 TTTCTTCCGGAAACTCGCTGATCTTGACAAAGATCCATCAAGTATAGCTGATGGAAAGGC 1619
Query 1497 TGCTTTCCTACGTGTCCGTAAGTGGACAAGGAAGGTGGACATGTTTGGAAAGGACTACAT 1556
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1620 TGCTTTTCTACGTGTCCGAAAGTGGACAAGGAAAGTGGACATGTTTGGAAAGGACTACAT 1679
Query 1557 TTTCGTGCCGGTGAACTTCAACCTTCACTGGAGTTTAATAGTCATATGTCACCCTGGTGA 1616
||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1680 TTTTGTGCCTGTGAACTACAACCTTCACTGGAGTTTAATAGTCATATGCCACCCTGGTGA 1739
Query 1617 AGTGGCTAATCGTACAGATCTAGACTTGGATGACTCGAAAAAAGTACCGTGCATATTACA 1676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1740 AGTGGCTAATCGTACAGATCTAGACTTGGATGACTCAAAAAAAGTACCGTGCATATTACA 1799
Query 1677 TATGGATTCTATAAAAGGGAGCCATGCAGGGCTTAAAAATCTAGTCCAAAGTTACTTGTG 1736
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1800 TATGGATTCTATAAAAGGGAGCCATGCAGGGCTTAAAAATCTAGTCCAAACTTACTTGTG 1859
Query 1737 CGAGGAGTGGAAGGAGAGGCATAAAGAGACATCGGATGATATTTCTTCCAGATTCATGAA 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CGAGGAGTGGAAGGAGAGGCATAAAGAGACATCGGATGATATTTCTTCCAGATTCATGAA 1919
Query 1797 TTTGCGGTTTGTCTCACTTGAGTTGCCACAGCAGGAAAACTCATTTGACTGTGGCCTCTT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TTTGCGGTTTGTCTCACTTGAGTTGCCACAGCAGGAAAACTCATTTGACTGTGGCCTCTT 1979
Query 1857 TCTGCTGCACTATCTAGAGCTATTTCTTGCTGAAGCTCCCCTTAATTTTAATCCTTTCAA 1916
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1980 TCTGCTGCACTATCTGGAGCTATTTCTTGCTGAAGCTCCCCTTAATTTTAGTCCTTTCAA 2039
Query 1917 GATATATAATGCTTCCAACTTTCTTTATCTGAACTGGTTTCCTCCTGCCGAGGCATCATT 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GATATATAATGCTTCCAACTTTCTTTATCTGAACTGGTTTCCTCCTGCCGAGGCATCATT 2099
Query 1977 GAAGCGTACTCTAATTCAGAAGTTAATTTTTGAACTCCTTGAAAACCGGTCACGGGAAGT 2036
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2100 GAAGCGTACTCTGATTCAGAAGTTAATATTTGAACTCCTTGAAAACCGGTCACGGGAAGT 2159
Query 2037 TAGTAATGAACAGAACCAGTCCTGCGAAAGTCCAGTTGCCGTCAATGACAATACGGGCAT 2096
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 2160 TAGTAATGAACAAAACCAGTCCTGTGAAAGTCCAGTTGCCGTCAATGACGATATGGGCAT 2219
Query 2097 TGAGGTTCTCTCTGAGAGATGCAGCCCCCTGATAGACTGTAACGGGAATATGACACAGAC 2156
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2220 TGAGGTTCTCTCTGAGAGATGCAGCCCCCTAATAGACTGTAACGGGGATATGACACAGAC 2279
Query 2157 GCAAGATGATCAAGGAATCGAAATGACTTTGCTTGAAAGATCTTCCATGAGGAACATACA 2216
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2280 GCAAGACGATCAAGGAATCGAAATGACTTTGCTTGAAAGATCTTCCATGAGGCACATACA 2339
Query 2217 AGCTGCTAATGATTCGGGTATGGTACTAAGAGATTTATTCGATTCTGGAGCCAACAACAC 2276
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2340 AGCTGCTAATGATTCGGGTATGGTACTAAGAGATTTATTCGATTCAGGATCCAATAACAC 2399
Query 2277 AGGATCATTACTTGTACAACTACAAGAACCATTCGAGGAACCATCTTCGTTTTATCATCT 2336
|||||||||||||| |||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 2400 AGGATCATTACTTGAACAACTACAACAACCATTCGAGGATCCGTCTTCGTTTTATCATCT 2459
Query 2337 TAGTAACGACTCGTTGGCAAGAGAGCAAGTGGACATGGAAACTGGTGAACAATTTATGTG 2396
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2460 TAGTAACGACTCGTCGGCAAGAGAGCAAGTGGACATGGAAACTGGTGAACAGTTTATGTG 2519
Query 2397 TTTGAACGCTGGAGAGGGCAACTTTCAATGCATCACTGAAACTGCCTCTCCGAGAGCATC 2456
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2520 TTTGAACGCTGGAGAGGGCAACTTTCAATGCATCACGGAAACTACCTCTCCGAGAGCATC 2579
Query 2457 TAATTCATTCACTTCATGGAACCTTGGTATTCCCCTGGTGCAGAAGGAAGATGAGACTGA 2516
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2580 TAATTCATTCTCTTCATGGAACCTTGGTATTCCCCTGGTGCAGAAGGAAGACGAGACTGA 2639
Query 2517 TTTGTTATCTGAAACTTCGAAAAGCACTTCTAATGATTCAGAAGATATCGGTATCATAGA 2576
||||||||||||||||||||| || ||||||||||||| | | ||||||||||||
Sbjct 2640 TTTGTTATCTGAAACTTCGAATAG---TTCTAATGATTCA-A---T--CGGTATCATAGA 2690
Query 2577 AGACAACCAAATAGAAAATACTCATGAAGGAGAAATCGGCGAGAGTCCTCCAAGAGAGAC 2636
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2691 AGACAACCCAATAGAAAATACTCATGAAGAAGAAATCGACGAGAGTCCTCCAAGAGAGAC 2750
Query 2637 CGTCTCTTTAATATCTGCTACAGTGGGTTCTAACACTG---ACCATAACACTGAGAATGA 2693
||||||||||| |||||| || |||||||||||||||| |||||| ||||||||||||
Sbjct 2751 CGTCTCTTTAAAATCTGCAACCGTGGGTTCTAACACTGCTGACCATACCACTGAGAATGA 2810
Query 2694 AGAGCTCGTTTCTACTCATGTTGAGCTTGTTGTTCCATCGAGTCAAGA-TGACGGAGATG 2752
||||| ||||||||| || ||||||||||||||||||||||||| || |||| ||||||
Sbjct 2811 AGAGCCCGTTTCTACACACATTGAGCTTGTTGTTCCATCGAGTCA-GAATGACAGAGATG 2869
Query 2753 AGGAGAAGCCAGTGGAGCATGATCCTGAAATTGGGGACAAGGCGAGTGAAGATGATGGAG 2812
||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 2870 AGGAGAAGCCATTGGAGCATGATCTTGAAATTGGGGACAAGACGAGTGAAGATGTTGGAG 2929
Query 2813 ATGAGTGTGATCAGAAGGAGCCAATGGAGGAAGAAGAGGAGAAGCGAGCTGCAAAACGGC 2872
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2930 ATGATTGTGATCAAAAGGAGCCAATGGAAGAAGAAGATGAGAAGCGAGCTGCAAAACGGC 2989
Query 2873 CAAGGCTGTCATCTTCCACTGACGAAGCTGAGGAGA---A-A--TAGAGATTGGGTGG-C 2925
| ||||| |||||| |||||| |||||||||||||| | | ||||||||| |||| |
Sbjct 2990 CGAGGCTATCATCTCCCACTGGCGAAGCTGAGGAGATGGAGAAATAGAGATTGTGTGGGC 3049
Query 2926 TATCAACGAACACACCACGGGTTTTGTGTTGGGGTCTTGGATGGTTAGAC---TTAGAGT 2982
||| | | ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 3050 TAT-ATC-AACACACCACGGGTTTTGTGTTGGG-TCTTGGATGGTTAGACGACTTAGAGG 3106
Query 2983 ATTTATATCAAACCAACACCTTTAGGACGTGTTTATATCGTTGTAGGAGTTTTTTA--A- 3039
|||||||||||||| | | ||||||| ||||||||| |||||||||||| ||||| |
Sbjct 3107 GTTTATATCAAACCA-C-C-TTTAGGAAGTGTTTATAACGTTGTAGGAGTATTTTACGAA 3163
Query 3040 GAA---G-AAA-AAt----t-ttt--t--t-------GTAAAATTTCGATACGTTAACTT 3078
||| | ||| ||| | ||| | | |||||||||||||||||||||||
Sbjct 3164 GAAAAAGGAAAGAATAACGTCTTTCATCGTTTTTTATGTAAAATTTCGATACGTTAACTT 3223
Query 3079 A-G-GG-TTGATGAATATATTTAGCC-ATTTTGTGGTTTT-ATTTGAGGTTCTTCCGAGT 3133
| | || ||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 3224 AAGAGGGTTGATGAATATAT--AGCCCATTTTGTGGTTTTTATTTGAGGTTCTTCCGAGT 3281
Query 3134 AATTTTT-ACGTATAT 3148
||||||| || |||||
Sbjct 3282 AATTTTTTACATATAT 3297
Score = 952 bits (515), Expect = 0.0
Identities = 619/669 (93%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAAAACATGGAAGTCTTCGATTTCAACGAAGAGGACGAGCTCCCTGAGCCTGCA 60
|||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 145 ATGAAGAAAAACTTTGAAGTATTCGATTTCAAAGAAGAGGACGAGCTCGCTGAGTCTGCA 204
Query 61 GCTGGAAAGTTATTGGAAAAATTCACAAACCCTAGTCCTTGCAATTCTCCGGTTCTGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GCTGGAAAGTTATTGGAAAAATTCACAAACCCTAGTCCTTGCAATTCTCCGGTTCTGCAA 264
Query 121 CGCCAACGCATCCACAGCTTCTGCAATGAAAAAAGTGATCA-GAAGGAAGAAATGGAAGG 179
|||||||||||||| |||||||||||||||||| ||| | | ||| ||||||||||||||
Sbjct 265 CGCCAACGCATCCAAAGCTTCTGCAATGAAAAACGTGTTGAGGAA-GAAGAAATGGAAGG 323
Query 180 TCCAAGTTGTGCAGAGCCTGCTACTGCTGTAGAGT-TAGACGATCGTCAATGTGAAGATG 238
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 324 TCCAAGTTGTGCAGAGCCTGCTACTGCTGTAGAGTCT-GACGATCATCAATGTGAAGATG 382
Query 239 CTCCGACTTTTGTAACAGAAGCTGAGGAGTCCAGAACGAGTCTCACATTTCGG-TTGGAA 297
| ||||||| |||||||||||| ||||||||||||||| |||||||||| || ||||||
Sbjct 383 ATTCGACTTTGGTAACAGAAGCTAAGGAGTCCAGAACGATTCTCACATTT-GGTTTGGAA 441
Query 298 ACCAGTGACCATTTAAAAGAAACAGATGCCGATCACGTTAATCATGGATTGATGTTTGGT 357
|||| |||||||||| ||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 442 ACCACTGACCATTTAGAAGAAACAGATGCAGAGCACGTTAATCAGGGATTGATGTTAGGT 501
Query 358 TTGAATACTGAAGACCTGGCAAAGGAAACAGATGA-AGATCAAGATAACCATGGATTGAT 416
|| || ||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 502 TTAAAAACTGAAGACCTGGCAAAGGAAACAGAT-ATAGATCACGATAACCATGGATTGAT 560
Query 417 GTTTGGTTTGAATACCGAAGACCACATAGAAGAAACTGATGTAGATCATGGATTAGAAAG 476
|||||||||||||| ||||||| ||||||||||||| ||||| |||||| || | || ||
Sbjct 561 GTTTGGTTTGAATAGCGAAGACGACATAGAAGAAACAGATGTGGATCATAGAGTGGAGAG 620
Query 477 TTTCTCTTGCGAGCCAGGCAGAAGTAGTTTTTACGCTGAAACTTCGTCATATAGTCAACG 536
|||||||||| ||| |||| ||| ||||||||||||||||||||| || |||||||||||
Sbjct 621 TTTCTCTTGCCAGCTAGGCGGAAATAGTTTTTACGCTGAAACTTCATCTTATAGTCAACG 680
Query 537 CCAGCTAAACTCACCCTTTTCAGATTCTTCATCCAGTGAGGAGCAAATTGATATGATGTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CCAGCTAAACTCACCCTTTTCAGATTCTTCATCCAGTGAGGAGCAAATTGATATGATGTC 740
Query 597 AGCTATTGATGAAAGCTTGAGTGATCGATCTGCGTTAAGTCAAGATTCTGATTCAGAAGA 656
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 741 AGCTATTGATGAAAGCTTGAGTGATCGATCTGCGTTGAGTGAAGCTTCTGATTCAGAAGA 800
Query 657 TGATGAAGA 665
|||||||||
Sbjct 801 TGATGAAGA 809
Score = 451 bits (244), Expect = 2e-125
Identities = 281/298 (94%), Gaps = 5/298 (2%)
Strand=Plus/Plus
Query 662 AAGATTGGATGGCTGAACA---CTTCAGCGATGTA-GAAAAGATTGACCTAAGCACCGCT 717
||||||||||| ||||||| ||||| ||||| | |||||||||||| |||||||||||
Sbjct 905 AAGATTGGATGACTGAACATTGCTTCAACGATG-AGGAAAAGATTGACTTAAGCACCGCT 963
Query 718 GTTGTAATGACTTCGGAGTATGCTATACTAAAGGATATGCATTGTGCTGCATCTCTAGTA 777
||| |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 964 GTTATAATGACTTCGGAGTATGTTATACTTAAGGATATGCATTGTGCTGCATCCCTAGTA 1023
Query 778 ATCTTTTCATGCAATGGCATCAAAATAAAGAGTTTCCTCGCAAATAATGAAGAAGGGCCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1024 ATCTTTTCATGCAATGGCATCAAAATAAAGAGTTTCCTCGCAAATAATGAAGAAGTGCCA 1083
Query 838 TTTTCTTGTGAATTTGGTGTTGAAGACATTGTTAGTATTCAATACAATTGGTACCAAAAT 897
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1084 TTTTCTTGTGAATTTGGAGTTGAAGACATAGTTAGTATTCAATACAATTGGTACCAAAAT 1143
Query 898 GTTGGATTGATCATTCTCAGACTTCGAGTTCTACTGAAGGATGAAAAATGCCATGAAG 955
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1144 GTTGGATTGATCATTCTCAGAATTCGAGTTCTACTGAAGGATGAAAATTGCCATGAAG 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158276705165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5