BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471075
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09740.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1022 0.0
> AT1G09740.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr1:3154532-3156275 FORWARD LENGTH=843
Length=843
Score = 1022 bits (553), Expect = 0.0
Identities = 646/689 (94%), Gaps = 13/689 (2%)
Strand=Plus/Plus
Query 1 CTCTTGAACGTTCCAAGAGTTGAAGAAAATCACaaaaaaaCTTAGCACAGAGAAGAGAGA 60
||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 CTCTTGAACTTTCCAAGAGTTGAAGAAAATCACAGAAAGCCTTAGCACAGAGAAGAGAGA 60
Query 61 TTGAAGAAGTCATGGATGTTTCAGGAAGCTTGAATTGCGTTGTTGTGGCTGTAGATGGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTGAAGAAGTCATGGATGTTTCAGGAAGCTTGAATTGCGTTGTTGTGGCGGTAGATGGAA 120
Query 121 GCGAGGTGAGTATGGAAGCTCTGAGGTGGGCCCTAGACAACCTCAAGCTCTCATCGTCTT 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 GCGAGGTGAGTATGGAAGCTCTGAGGTGGGCTCTAGACAACCTCAAGCTCTCTTCGTCTT 180
Query 181 CTTCCGATTCATCATTCGTCGTGCTCCACGTCCAGCCGTCGCCTTCTGTTGCCGCCGGCG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CTTCCGATTCATCATTCGTCGTGCTCCACGTCCAGCCGTCGCCTTCTGTAGCCGCCGGCG 240
Query 241 TGAGTCCCGGCACCATACCTTTCGGTGGTCCCAGTGGTCTTGAGGTTCCTGCTTTCACTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAGTCCCGGCACCATACCTTTCGGTGGTCCCAGTGGTCTTGAGGTTCCTGCTTTCACTG 300
Query 301 CTGCAATCGAGCAACACCAGAAGCGAATCACCGATACTATCCTCGAACACGCTAATCAGA 360
||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |
Sbjct 301 CTGCAATCGAGCAACACCAGAAGCGGATCACCGACACCATCCTCGAACACGCTAGTCAAA 360
Query 361 TTTGTGCTGAAAAATCTGTGAATGTGAAAACAAAAGTGGTTGTTGGGGATCCCAAGTATA 420
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 361 TTTGTGCTGAAAAATCTGTGAATGTGAAAACACAAGTGGTTATTGGGGATCCCAAGTATA 420
Query 421 AGATCTGCGAAGCTGTAGAGAATTTGCATGCTGATCTGCTTGTCATGGGTTCCCGGGCTT 480
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 421 AAATCTGCGAAGCTGTAGAGAATTTGCATGCTGATCTTCTTGTCATGGGCTCCCGGGCTT 480
Query 481 ATGGCCGCATTAAGAGGATGTTTCTGGGAAGTGTAAGCAACTACTGCACCAACCATGCGC 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 481 ATGGCCGCATTAAGAGAATGTTTCTGGGAAGTGTAAGCAACTACTGCACCAACCACGCCC 540
Query 541 ATTGCCCTGTTGTGATAATTAAACCAAAAGAGGATTCTTCGGCATAACCAGGAGCTTGTC 600
|||| |||||||||||||| |||||||||||||||||||| |||||| |||| |
Sbjct 541 ATTGTCCTGTTGTGATAATCAAACCAAAAGAGGATTCTTCTGCATAAAGAGGA--T---- 594
Query 601 AATATATGTACATATGCAAAAGGATATCGAAG-CCATCTTTTTAAT-TTTGTGAAGTTTT 658
| |||||||||||||||||| ||||||| ||| |||||| | ||| ||| |||||||||
Sbjct 595 A-TATATGTACATATGCAAAGGGATATC-AAGACCATCTGT--AATCTTT-TGAAGTTTT 649
Query 659 GTGAAGCTATGGAAGCAAAGCAAGAATTC 687
|||||||||| ||||| ||||||||||||
Sbjct 650 GTGAAGCTATAGAAGCCAAGCAAGAATTC 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5