BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471077
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotei... 1644 0.0
> AT1G09760.1 | Symbols: U2A' | U2 small nuclear ribonucleoprotein
A | chr1:3159125-3161692 REVERSE LENGTH=1190
Length=1190
Score = 1644 bits (890), Expect = 0.0
Identities = 1057/1132 (93%), Gaps = 34/1132 (3%)
Strand=Plus/Plus
Query 20 CGAAGCAGTAAAACCCTAGTAGAATAATGGTGAAGCTCACAGCTGATTTGATCTGGAAAA 79
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 64 CGAAGCAGTAAAACCCTAGTAGAATAATGGTGAAGCTCACGGCTGATTTGATCTGGAAAA 123
Query 80 GTCCTCACTTCTTCAATGCTATCAAGGAGCGAGAATTGGATCTACGAGGTAACAAGATTC 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GTCCTCACTTCTTCAATGCTATCAAGGAGCGAGAATTGGATCTACGAGGTAACAAGATTC 183
Query 140 CTGTAATCGAAAACTTGGGTGCTACTGAGGACCAATTCGATACAATTGATCTTTCTGATA 199
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 184 CTGTAATCGAAAACTTGGGTGCTACTGAGGACCAGTTCGATACCATTGATCTGTCTGATA 243
Query 200 ATGAGATCGTTAAGCTAGAAAACTTTCCTTACCTCAACCGCTTAGGAACTTTGCTCATCA 259
| ||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 244 ACGAGATAGTTAAGCTAGAAAACTTCCCATACCTCAACCGTTTAGGAACTTTACTCATCA 303
Query 260 ATAACAATCGTATCACCCGGATAAATCCTAACCTTGGAGAATTCCTGCCGAAGCTTCACT 319
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 304 ATAACAATCGTATCACCCGGATAAATCCTAACCTTGGAGAATTCCTACCGAAGCTTCACT 363
Query 320 CTTTGGTTCTTACTAATAACAGGCTTGTGAATCTGGTTGAAATTGACCCCCTTACCTCCA 379
||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| ||||||
Sbjct 364 CTTTGGTTCTTACAAATAACAGGCTTGTGAATTTGGTTGAGATTGATCCCCTTGCCTCCA 423
Query 380 TTCCCAAGCTGCAGTACCTTAGTTTGTTGGATAATAATATCACCAAAAAGCCAAATTATC 439
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 424 TTCCCAAGCTGCAGTACCTTAGTTTGTTGGATAATAATATCACCAAAAAGGCAAATTATC 483
Query 440 GCCTTTATGTGATTCACAAGCTAAAATCACTTCGAGTACTGGATTTCATAAAAATCAAAG 499
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 484 GCCTTTATGTGATTCACAAGCTAAAATCACTTCGAGTACTGGATTTCATTAAAATCAAAG 543
Query 500 CCAAGGAGAGAGCTGAAGCTGCAGCTTTGTTTTCATCCAAAGAAGCAGAAGAGGAAGTTA 559
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 544 CCAAGGAGAGAGCTGAAGCTGCATCTTTGTTTTCATCCAAAGAAGCAGAAGAGGAAGTTA 603
Query 560 AGAAAG-TTTCTCGGGAGGAGGTTAAAAAAGTGCCAGAAACTGCAGAAAATCCAGAGACT 618
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 A-AAAGGTTTCTCGGGAGGAGGTTAAAAAAGTGTCAGAAACTGCAGAAAATCCAGAGACT 662
Query 619 CCGAAAGTGGTGGCGCCAACA-CAGGAGCAAATATTAGCGATCAAGGCTGCAATTATCAA 677
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 663 CCGAAAGTGGTGGCGCCAACAGC-GGAGCAAATATTAGCTATCAAGGCTGCAATTATCAA 721
Query 678 TTCTCAGACGATAGAGGAAATTGCCAGACTCGAACAGGCTTTGAAGTTTGGCCAGGTTCC 737
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 722 TTCTCAGACGATAGAAGAAATTGCCAGACTCGAACAGGCTTTGAAGTTTGGACAGGTTCC 781
Query 738 TGCTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGGAATAGAA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGCTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGGAATAGAA 841
Query 798 AGTGTGGCTGTTGCC--TCCAATCGTTGTAGCTGCTGCTCGAGAATGCTCACAGCAATT- 854
|| ||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 842 AGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAGAATGCTCACAGCAATTG 901
Query 855 ----C-CTGT-AA----G-A---TTTCTGTCACTTCCTTAGGAACTCATGCGCAACAGTT 900
| ||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 902 TTTTCTCTGGCAATCCTGTACGGTTTCTGTCACTTCCTTAGGAACTCATGCGCAACAGTT 961
Query 901 GGATTGAACCTGTAAACTATTTACTGCTCGAGGCATCTGTTTTTGAACCCTTAAAAAGAA 960
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 962 GGA---A-CCTGTAAACTATTTACTGCTCGAGGCATCTGTTTT-GAACCCTTAAAAAGAA 1016
Query 961 TGGCAAAGAGGATTGTAGTCTTAATTAAGTCTCTGCATTGGCACagagagagagagagGG 1020
|| ||||||||||||||||||| ||||||||||||||||||| | ||||| ||| ||
Sbjct 1017 TGCCAAAGAGGATTGTAGTCTTT-TTAAGTCTCTGCATTGGCAT-G-GAGAGCGAG-GG- 1071
Query 1021 GGTTGCACACAGTATTTGCTTATGCTCTTTTCGCACTATAGTTTCTTCATATTATTTTGT 1080
| |||||||| |||||||||||||||||||||| || | ||||||| || ||||||||
Sbjct 1072 --T-GCACACAGAATTTGCTTATGCTCTTTTCGCATTAGAATTTCTTCTTAGTATTTTGT 1128
Query 1081 ATCTCGTCACTGAATATCATCAATTACTGAGAAACTAATTTAGAAAAGAAAT 1132
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1129 ATCTTGTCACTCAATATCATCAATTACCGAGAAACTAATTTAGAAAAGAAAT 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5