BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471080
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09790.1 | Symbols: COBL6 | COBRA-like protein 6 precursor |... 2220 0.0
> AT1G09790.1 | Symbols: COBL6 | COBRA-like protein 6 precursor
| chr1:3168482-3170819 REVERSE LENGTH=1451
Length=1451
Score = 2220 bits (1202), Expect = 0.0
Identities = 1372/1453 (94%), Gaps = 15/1453 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGCAATGCTAAACCTGTCGTTCGTCGTTACTGTCATTCTAT-TCACAATCTCATC 59
||||||||||||||||| || | | ||||||||||||||||||| | | |||||| |||
Sbjct 1 ATGGGTGCAATGCTAAATCTTTTGCTCGTCGTTACTGTCATTCTCTGT-TCAATCTTATC 59
Query 60 ACACACACGGTTTATGATTATTAGTGATAAAATGGTTGCAGATGGATACGATCCT-TTGG 118
|| |||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
Sbjct 60 ACCCACACGGTTTATGATTATGATTGATAAAATGGTTGCAGATGGATACGATCCTCTT-G 118
Query 119 ATCCGTTCGGGAAAATCATCATCAAATGGGATCTTCTTTTATCATCACCTGGCCAACACC 178
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATCCGTTCGGAAAAATCATTATCAAATGGGATCTTCTTTTATCATCACCTGGCCAACACC 178
Query 179 ACGTACTAGTAACATTAGAGAACATGCAAGAGTACCGACACGTGGAAAAGCCAGGGTGGA 238
|||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 ACGTACAAGTAACGTTAGAGAACATGCAAGAGTATCGACACGTGGAAAAGCCAGGGTGGA 238
Query 239 AGCTTAGTTGGCATTGGCTCAA-CAATGAAGTGATATGGGAAATGAAAGGAGCTGAGACG 297
||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 239 AGCTTAGCTGGCATTGGCTCAACCAA-GAAGTGATATGGGACATGAAAGGAGCTGAGACG 297
Query 298 ACGGAGCAAGGTAATTGCTCTGCCTTTGCCTCCAGCGGAAACCTCCCTCACTGCTGTCTC 357
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 298 ACGGAGCAAGGTAATTGCTCTGCCTTTGCCTCCAGCGGTAACCTTCCTCACTGCTGTCTC 357
Query 358 CAGCGACCAACCATCGTCGACCTTCTTCCCGGAGCTTCTCTCAACGTTCAGGTTGCCAAT 417
||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 358 GAGCGACCAACCATAGTCGACCTTCTTCCCGGTGCTTCTCTCAACGTTCAAGTTGCCAAT 417
Query 418 TGTTGCCGTGGTGGCGTCTTGACTTCCATGTCTCAGGACCACGCCAATCACGTCTCTGCT 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGTTGCCGTGGAGGCGTCTTGACTTCCATGTCTCAGGACCACGCCAATCACGTCTCTGCT 477
Query 478 TTTCAAATGGTAGTTGGAAGCTCTCCTGATGGCCCTGAAGAGTTCTATATCCCTTATAAT 537
||||| ||| ||||||||||||||||||||||||||| |||||| |||| |||| ||||
Sbjct 478 TTTCACATGACAGTTGGAAGCTCTCCTGATGGCCCTGAGGAGTTCAATATGCCTTCTAAT 537
Query 538 TTCGATATAGGGGTCCCGGGTTATAGTTGCGACAATGCTACATCCGTGGCCCCGACTAAG 597
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 538 TTCGATATAGGGGTCCCGGGTTATAGCTGCGACAATGCTACATCCGTGTCCCCGACTAAG 597
Query 598 TTCAGCACAGACAAGGGCCGTCGCAAAACACAAGCTCTAGCAACATGGGAGGCAGTGTGT 657
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTAGTACTGATAAGGGCCGTCGCAAAACACAAGCTCTAGCAACATGGGAGGCAGTGTGT 657
Query 658 GTATACTCGCAGTTTCGGTCATCACAATCTCCAAAATGCTGTGTTTCACTCTCTGCCTTC 717
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 658 GTATACTCGCAGTTTCGGTCATCACCATCGCCAAAATGCTGCGTTTCACTCTCTGCCTTC 717
Query 718 TACTACCAAAACATCGTTCCTTGTCCTACCTGTAGCTGCGGCTGCTCTAGTTCCCCTTGT 777
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 718 TACTACCAAAACATTGTTCCTTGTCCTACCTGTAGCTGCGGCTGCTCGAGTTCCCATTGT 777
Query 778 GTCAAGGATGGAGAGTTGCCGCCATATCTTGAACAGAAACATGATCCAGAGGAGGAAGTA 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GTCAAGGATGGAGAGTTGCCGCCATATCTTGAACAGAAACATGATCCAGATGAGGAAGTA 837
Query 838 TCTCCTGTGGTGAAGTGTTCCGATCATATGTGTCCCATCCGCATCCACTGGCATGTGAAA 897
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCGCCTGTCGTGAAGTGTTCGGATCATATGTGTCCCATCCGCATCCACTGGCATGTGAAA 897
Query 898 GTGAACTATAGAGAGTATTGGAGGGTTAAGATCACAGCAACAAATTTCAACACAATGAAG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTGAACTATAGAGAGTATTGGAGGGTTAAGATCACAGCAACAAATTTCAACACAATGAAG 957
Query 958 AATTACACTAATTGGAACTTAGTTGTGCTTCATCCAAACTTGAAAAGCGTCCAACAAGTC 1017
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 AATTACACTAATTGGAACTTAGTGGTGCTTCATCCAAACTTGAAAAGCGTCCAACAAGTC 1017
Query 1018 TTTAGCTTTAACTACAAATCTTTGACACCATATCAAAACGGCATCAACGACACAGGGATG 1077
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1018 TTTAGCTTTAACTACAAATCTTTGACACCATATCAAAACAGCATCAATGACACAGGGATG 1077
Query 1078 TTTTGGGGAGTCCAGTTTTACAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTG 1137
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTT 1137
Query 1138 CAAACAGAGTTATTGCTAAAGAAAGATATGGGAAATTTCACATTT-AGAGAAGGTTGGGC 1196
||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1138 CAAACAGAGTTATTGCTGAAGAAGGATATGGGAAATTTCAC-TTTCAGAGAAGGTTGGGC 1196
Query 1197 TTTCCCAAGGAGAATCTTGTTCAATGGTGATGAATGTGTAATGCCTTCTCCAGATGACTT 1256
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 TTTCCCAAGGAGAATCTTGTTCAATGGTGATGAATGTGTTATGCCTTCTCCAGATGACTT 1256
Query 1257 CCCGAGGCTGCCAAAATCTGCTTCTGCTCATTCCTCTTCGTCTTCCTCTGCTGTTATCAG 1316
|| |||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1257 TCCAAGGCTGCCAAAATCTGCT-C-----ATTCCTCTTCGTCTTCCTCTGCTGTTATTAG 1310
Query 1317 CTCTGTTACAGTCGTTTTCTGTTTTCTCCTTCATCATCTTCTTCTACTTGTTTGATGAAA 1376
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1311 CTCTGTTTCAGTCGTTTTCTGTTTTCTCCTTCATCATCTTCTTCTACTAGTTTGATGAGA 1370
Query 1377 TTGTTTTCTTTTGTTTGAACTTGCATTGTTCCATGCTTCTTTGACTTTTTCAAGAAACAA 1436
|||||| |||| ||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 1371 TTGTTT-CTTTCATTTGAACCTACATTGTTCCATGCTTCTTTGACTTTTCCAAGAAACAA 1429
Query 1437 AGCCTCTAATAAA 1449
|||||||||||||
Sbjct 1430 AGCCTCTAATAAA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5