BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471081
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09795.1 | Symbols: ATATP-PRT2, HISN1B, ATP-PRT2 | ATP phosp... 2087 0.0
> AT1G09795.1 | Symbols: ATATP-PRT2, HISN1B, ATP-PRT2 | ATP phosphoribosyl
transferase 2 | chr1:3173534-3176910 FORWARD LENGTH=1516
Length=1516
Score = 2087 bits (1130), Expect = 0.0
Identities = 1330/1421 (94%), Gaps = 35/1421 (2%)
Strand=Plus/Plus
Query 1 TGCAATAATATCCGCCGACCA--TCTCT-CT-C-T---CGA--GAGAGCAACCATGTCAA 50
|||||| |||||||||||||| ||||| || | | ||| ||||||||||||| |||
Sbjct 2 TGCAATTATATCCGCCGACCATCTCTCTCCTCCGTCACCGAGGGAGAGCAACCATGCCAA 61
Query 51 TCTCAATTCCCCTCAACACCACTCTACAATACTCG---------tcttcttcttcttctt 101
||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 62 TCTCAATTCCCCTTAACGCCACTCTACAATACTCGTCTCCTTCTTCTTCTTCTTCTTCTT 121
Query 102 c-tctc-c-taccttctttctctctctcctctcctA-TCACTTCAACCGCTGTTTCCGTT 157
| |||| | ||||||||| | |||| | |||||| | || |||||||| |||||||| ||
Sbjct 122 CTTCTCTCGTACCTTCTTCCCCTCTTTTCTCTCCGATTC-CTTCAACCACTGTTTCCCTT 180
Query 158 ACCGGAATTCGGCAGCGATGCCTCAGGATGGTCACTTCTTGCGTCTCCAACGCTCAGAAA 217
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGGAATTCGCCAGCGATGCCTCAGGATGGTCACTTCTTGCGTCTCCAACGCTCAGAAA 240
Query 218 TCCGTCCTGAATGGTGCCACCGACGCCGTCTCTATCGTCGGGCGGGAGCAGATTCGTCTT 277
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 241 TCCGTCCTGAATGGTGCCACCGATTCCGTCTCTGTCGTCGGGCGGGAGCAGATTCGTCTT 300
Query 278 GGTCTTCCTAGCAAGGGACGCATGGCCGCCGATTCTCTGGATCTTCTCAAGGATTGCCAA 337
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GGTCTTCCTAGCAAAGGACGCATGGCCGCCGATTCGCTGGATCTTCTCAAGGATTGCCAA 360
Query 338 TTGTTTGTCAAACAAGTCAATCCACGGCAATATGTTGCTCAAATTCCTCAGTTACCAAAT 397
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTGTTTGTCAAACAAGTCAATCCACGACAATATGTTGCTCAAATTCCTCAGTTACCAAAT 420
Query 398 ACTGAGGTTTGGTTTCAACGTCCAAAAGACATTGTCAGGAAGTTGCTCTCAGGAGATCTT 457
||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 421 ACTGAAGTTTGGTTTCAACGACCAAAAGACATTGTCAGAAAGTTGCTATCAGGAGATCTG 480
Query 458 GATTTAGGCATCGTTGGTCTTGACATTGTTGGTGAATTTGGTCAGGGAAATGAAGATCTT 517
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GATCTAGGCATCGTTGGTCTTGACATAGTTGGTGAATTTGGTCAGGGAAATGAAGATCTT 540
Query 518 ATCATTGTCCACGAAGCTCTCAACTTTGGAGA-TGTCATCTCTCCCTTGCGGTACATACC 576
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 ATCATTGTCCACGAAGCTCTCAACTTTGGAGATTGTCATCTCTCCCTTGC----CATACC 596
Query 577 CAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCACAAATGCCTCAATG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCACAAATGCCTCAATG 656
Query 637 GACTGAGGAAAGACCTTTACGAGTTGCTACAGGATTCACTTATCTAGGCTCCAAATTTAT 696
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 GACCGAGGAAAGACCTTTACGAGTTGCTACAGGATTCACTTATCTAGGCCCCAAATTTAT 716
Query 697 GAAAGAAAACGGTATAAAGCATGTGACTTTTTCAACTGCAGATGGAGCCCTAGAGGCAGC 756
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 717 GAAAGACAACGGTATAAAGCATGTGACTTTCTCAACTGCAGATGGAGCCCTAGAGGCAGC 776
Query 757 TCCTGCGATGGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAA 816
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCTGCGATGGGGATAGCTGATGCCATTTTAGACCTTGTGAGCAGTGGGACAACCCTTAA 836
Query 817 AGAGAACAACTTAAAAGAGATTGAAGGAGGGGTTGTGCTGGAAAGTCAGGCTGCGCTAGT 876
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 AGAGAACAACTTAAAAGAAATTGAAGGAGGGGTTGTGCTGGAAAGTCAGGCTGCACTAGT 896
Query 877 GGCGAGCAGAAGGGCATTGACTGAGAGAAAAGGAGCACTAGAAACAGTGCATGAGATTCT 936
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGCGAGTAGAAGGGCATTGACTGAGAGAAAAGGAGCACTAGAAACAGTGCATGAGATTCT 956
Query 937 CGAGAGATTAGAGGCTCATTTGAAGGCAAATGGGCAATTCACTGTGGTTGCAAACATGAG 996
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 CGAGAGATTAGAGGCTCATTTGAAGGCAAATGGTCAATTCACTGTGGTTGCAAACATGAG 1016
Query 997 AGGAACGGATGCTGAGGAAGTGGCTGAACGTGTGAAAACCCAACCATCATTATCAGGATT 1056
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1017 AGGAACGGATGCTGAAGAAGTGGCTGAACGTGTGAAAACCCAACCATCACTATCAGGATT 1076
Query 1057 GCAGGGACCAACAATAAGTCCAGTTTATTGTAAACGAGATGGAAAAGTATCAATTGAGTA 1116
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 GCAGGGACCAACAATAAGTCCAGTTTATTGTAAACGAGATGGAAAAGTAACAATTGAGTA 1136
Query 1117 CTATGCCATTGTGATATGTGTACCCAAAAAAGCTCTGTATGAGTCTGTGCAGCAACTGAG 1176
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 1137 CTATGCCATTGTGATATGTGTACCAAAAAAAGCGCTTTATGAGTCTGTGCAGCAACTGAG 1196
Query 1177 AGCGGTGGGAGGAAGTGGGGTACTGGTTTCACCTCTAACGTACATTTTTGATGAGGAGAC 1236
|||||||||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||||
Sbjct 1197 AGCGGTGGGAGGAAGTGGGGTACTAGTTTCTCCTGTAACATACATTTTTCATGAGGAGAC 1256
Query 1237 TCCCAGATGGAGTCAGCTTCTGAGTAAACTAGGCATGTGATACTGCTTCTCAGAGATACG 1296
||||||||||||||||||||||||||| || ||| | |||| |||||||||||| ||||
Sbjct 1257 TCCCAGATGGAGTCAGCTTCTGAGTAACCTCGGCCTTTGATGCTGCTTCTCAGACATACT 1316
Query 1297 TTGGTTTAGTCAGATGCATTCGTAGGAGGAACTCTTT-GGATCAAACACTACAATGt-tt 1354
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||
Sbjct 1317 TTGGTTTAGTCAGATGCATTCGTTGGAGGAACTCTTTTGG-TCAAACACTACAATGTCTT 1375
Query 1355 t-ttttttGG-TTT-ATCTTTTTGGATCTTTTAGAAGAAAA 1392
| |||||||| ||| |||||| |||||||| ||| ||||||
Sbjct 1376 TCTTTTTTGGGTTTTATCTTTGTGGATCTTATAGTAGAAAA 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5