BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471082
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09800.1 | Symbols: | Pseudouridine synthase family protein... 2013 0.0
> AT1G09800.1 | Symbols: | Pseudouridine synthase family protein
| chr1:3176883-3180421 REVERSE LENGTH=1442
Length=1442
Score = 2013 bits (1090), Expect = 0.0
Identities = 1203/1257 (96%), Gaps = 10/1257 (1%)
Strand=Plus/Plus
Query 1 ACATTGGCACTGAGCTTGAGAC-G-GTGAGAAATCATAAATC--TGTGTGAGTGA-TAAT 55
|||||||||||||||||||||| | |||||| |||||||||| || |||||||| | ||
Sbjct 28 ACATTGGCACTGAGCTTGAGACGGTGTGAGATATCATAAATCAGTGAGTGAGTGAGTCAT 87
Query 56 GTCCGATAATCTGAAGCATCCTCTCGATTCTACAGCTAGTGAGGAATCACTCGAGAGACT 115
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 88 GTCCGATAATCTGAAGCATCCTCTCGATTGTACAGCTAGTGAGGAATCACTCGAGAGACT 147
Query 116 CTCAAAGGTTGCGAGAATCGAGGGATTTAGTGACGAAGAAGAAGCAGAGGAACAACAAGG 175
|||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||
Sbjct 148 CTCAAAGGTTGCGAGAATCGAGGGATTTAGTGAC---GAAGAATCAGAGGAACAGCAGGG 204
Query 176 ATTGGGCGACTCGGAGTCCATGAACCCAGTAAACCCTAGGGTGCAGCGTTACTTGGTTGC 235
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 205 ATTGGCCGACTTGGAGTCCATGAACCCAGTAAACCCTAGAGTGCAGCGTTACTTGGTTGC 264
Query 236 CATTGAGTACATCGGAACTCGTTTCTCCGGTTCACAACAGCAAGCTAAGGACCGCACCGT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CATTGAGTACATCGGAACTCGTTTCTCCGGTTCACAACAGCAAGCTAAGGACCGCACCGT 324
Query 296 CGTCGGTGTATTGCAGGAGGCTTTTCATAAGTTTATTGGCCAACCAGTGAAGATCTTCTG 355
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 325 CGTCGGTGTATTGCAGGAGGCTTTTCATAAGTTTATAGGCCAACCAGTAAAGATCTTTTG 384
Query 356 CTCAAGTCGAACGGATGCCGGAGTGCATGCACTGTCAAATGTTTGCCATGTTGATGTGGA 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 385 CTCAAGTCGAACGGATGCCGGAGTGCATGCACTGTCAAATGTTTGTCATGTTGATGTGGA 444
Query 416 ACGCATCAGTAAAAGGAAGCCTGGTGAAGTGTTACCACCTCATGAGCCTGGTGTGGTCCA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACGCATCAGTAAAAGGAAGCCTGGTGAAGTGTTACCACCTCATGAGCCTGGTGTGGTCCA 504
Query 476 GAGAGCTGTGAACCATTTTTTACAGAGAAAAGATGGCGATGTTATGGTGATTGATGTTCG 535
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 505 GAGAGCGGTGAACCATTTTTTACAGAGAAAAGATGGTGATGTTATGGTGATTGATGTTCG 564
Query 536 GTGTGTCCCAAGTAATTATCATGCCAGATATAAGGCCCAGGAGCGCACATACTTCTACCG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GTGTGTCCCAAGTAATTATCATGCCAGATATAAGGCCCAGGAGCGCACATACTTCTACCG 624
Query 596 CTTGCTATCGGGGTCAGATCCATTATCAATCCTTGAAAAAGACCGTTGCTGGCATGTTCC 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CTTGCTATCCGGGTCAGATCCATTATCAATCCTTGAAAAAGACCGTTGCTGGCATGTTCC 684
Query 656 TGAGGAGCTAAATCCTCGCTCTATGCAGGAAGCATGCAGAGTTCTTGTTGGATCTCATGA 715
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 685 TGAGGAGTTAAATCTTCGCTTTATGCAGGAAGCATGCAGAGTTCTTGTTGGATCTCATGA 744
Query 716 TTTTAGCTCCTTCAGGGCAGCTGGTTGCCAGGCAAAGTCACCTATGAGATCTTTAGATGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TTTTAGCTCCTTCAGGGCAGCTGGTTGCCAGGCAAAGTCACCTATGAGATCTTTAGATGA 804
Query 776 ACTCAATATTACTGAAGTACCATCAACTCCATATTTTCCATCTATCACGGAAAGGGCGTG 835
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 805 ACTAAATATCACTGAAGTACCATCAACTCCATATTTTCCATCTATCACGGAAAGGACGTT 864
Query 836 GAGTAACCAAAACAATGGAGATCCTCTCGCATGTTCCAGTCAACCCAAGTCTGAGACTGC 895
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 865 GAGTAACCTAAACAATGGAGATCCTCTCGCATGTTCCAATCAACCCAAGTCTGAGACTGC 924
Query 896 TGGTGTTACTACTAATGTTGGAGAAGTGGAGGGGTCTACAGATGGTGATTCTTTTGGTAG 955
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 925 TGGTGTTACTACTAATGTTGGAGAAGTGGAGGGCTCTACAGAGGGTGATTCTTTTGGTAG 984
Query 956 AAGGAGACGGCACCGCTGCTATGTAGTTACAACGCGTTCCCGGGGTTTTCTGTACCACCA 1015
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 985 AAGGAGACGCCACCGCTGCTATGTAGTTACAGCACGTTCCCGGGGTTTTCTGTACCACCA 1044
Query 1016 GGTTCGACTGATTGTAGGAGCACTGAAATGCGTAGGCACTGGAGAATTGACGGTCTCAGA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GGTTCGACTGATTGTAGGAGCACTGAAATGCGTAGGCACTGGAGAATTGACGGTCTCAGA 1104
Query 1076 CGTTGAACGAATCCTGGAGGCGAAGACAGTGAGTGCAGCCAAACCCATGGCTCCTGCATC 1135
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1105 CGTTGAACGAATCCTGGAGGCGAAGACAGTGAGTGCAGCAAAACCCATGGCTCCTGCATC 1164
Query 1136 TGGTCTGTATCTTGCCCGTGTCAAATATGAGTTTCCATGAAGATTT-AAGCTCACTTCAT 1194
||||||||||||||||||||||| ||||||||||||||||| | | || | |||||||
Sbjct 1165 TGGTCTGTATCTTGCCCGTGTCAGATATGAGTTTCCATGAATACGTGAATTT-ACTTCAT 1223
Query 1195 TTCCGCTACAGTGGGTGAGGAGTTACCAAAATTGGTTTTTGTTCAGAAGCTGAATAG 1251
|||||| ||| |||| ||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1224 TTCCGCAACAATGGGCGAGGAGTCACCAATATTGGTTTTTGTTCAGAAGCTGATTAG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5